SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene469

Length: 2665 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene469
CTTGGACTATACAGCTCCAGAACTGGTCAGGAGTAAGATGCCAACTGTTAGCTGTGCATCTGATATATTCAGTCTTGGATGCCTTGCTTACCATTTGCTTGCTCGCAGACCTCTTCTGGAATGTAACAACAATGCTCGGATGTATACAAGTAAGATAGCATACTTGTCCCATGAGAGCTTTTCAAACATCCCTCCAGAGCTTGTACAGGATTTACGGCAAATGCTTAGTGCAAACGAATCATTAAGGCCAAGTGCTTTGGATTTCACAGGTTCTCTCTTCTTTCGTGATGATACAAGATTACGTGCTCTCCGTTTCCTTGATCATATGCTTGAGAGAGATAACATGCAGAAGTCCGAGTTTCTGAAAGCTTTGTCAGGGATGTGGAAAGACTTTGATGCTCGTGTGTTACGGTACAAAGTATTGCCACCACTATGTGCAGAACTTCGTAATGTTGTCATGCAACCAATGATTCTACCCATGGTCCTTACTATAGCGGAATCTCAGGACAAGCTTGATTTTGAACTTTCAACACTGCCAGCTTTGGTTCCTGTATTGTCTTCTGCATCTGGAGAATCATTGTTGCTCTTGGTTAAACATGCTGGCCTTATTATCAACAAGGCCAATCAAGAGCATTTGATAGCACATGTGCTTCCTTTGTTAGTTCGGGCTTATGATGATGCTGATGTCAGAATACAAGAAGAAGTTTTACGACGGACAGTCTCTCTTGCTAAACAGCTTGATTTTCAGGTTATGAAACAATCTGTTATGCCTCGTGTTCATGGGTTGGCGCTAAAAACTACAGTTGCTGCTGTGCGAGTAAATGCATTGCAATGTTTAGGAGAACTGGTACATTGGCTAGATAAGCAAGCGGTTCTAGAGATCTTACAAACATTGCAAAGGTGTACTGCTGTTGATCATTCTGCACCTACACTAATGTGTACTCTCGGTGTTGCAAATGCAATATACAAGCAGTATGGCTTAGAGTTTGCAGCAGAACATTTGCTTCCTCTCCTTGTCCCGTTACTGGTTGCACAACAGTTGAATCTTCAACAATTTGCCAAGTACATGCTCTTTGTGAAGGAGATCCTTCGGAAAATTGAGGAGAAGCGTGGTGTGACTCTTAATGAAGTAAGTCCATCCTCGGATATCAGTTCAACATCTGCCATAGGAATGGATGGATCTAATGTTGATTCCCTGAAGACAGTGGGTGTGATTTCAGCCACAGTAGGGAAATCTAGCAGCTCGTGGGATTCAGAAGATTGGGGTTCATTTGCTAAAGGTCCAAAAAGCAATAGCTCCTCAAATAATATGTCAACCCTAAATGGCAATTCATCGTCTTACAACTCAATGACAGCTTCTGTTCAGAGCTCCAGTGTGCTAAGTGGAATGCAGTCAATTCATTCTAGCCCTTCTACATATGCATCATCTGTCAGTTCGACATGTGCACCAGTAGATATTGAGTGGCCACCTCCAGCACTTGCATCGGCAGCACCTATGCTTTACATGTCTCAATCAGGTTCCTCATCAGCTTTTACCGAATATGGAAGTTGGTCATCTGGACATCATGGTCTTCAGGAGGCAGCAATCGAGAAATCAATGTCTAATGGTCTTGCTGATGTATCTGTTGGACCAACCTCCAGCATTGATGACATTGATCCCTTTGCTGACTGGCCTCCACGTACTAATAGTGGATTCAATAATCAATCATGGGACCGAATTGGTGCAGGTTCAATGAGTAGTTCAGGCAAAGCTCCTGTTCAAAATCCTGCTAGTTCATTGAGCTGGTCTACCTTAGGTCCAAGCATGCCAAATGGTTCACTGGCTGTTCCTGCAAACCAACAGCAGTTAGATATTGGTTCAATATTTGCATCTGCTAAGACTGAACCTGCGGCTTTGAAGATTGCTCCACCTCCACCTTCTGGAATGGGCAGAGGAAGAGGAAGAGGAAAAGGAAGAAGTCAAATCCTTTCTAGTAATTCTTCCCGGAACAGTAATGCAAAGCCACCTGCTGATCAGTCTCCGCTTCTAGATTTGCTTTAATCTCCCTCCCGTAAGAGCTATGGTGAAGCTTGTTTCTATGTGAGTTATTTAATTTGCCATTATGTCCAAATATTTTGTGTGAGAAATAAGAGGAAGAAGTGGCCATGATCTATATGGCAAGATTATCGTTCATCTTCTTGTTTAAGCATGGTCGTGTAATTATTAGCATTATTCTTGAGCATGCAGTTGCTGTTTTGTATCATCTCATGCTGTTGTATTTTAGCTTCATATTCTAAAGAGATCTTGGAAGACAAAAAGCACTTCAGAATGATAGTGCAAGGGCCTTCATCATTAAAAGTATGGATACTCGGTTAATTTTGTAGATTTATGGGAGATTGTTTGTCATGCCAGACAATGAGTCTTGTAACAGTAAGGAAAACAATGTTCAAGTTAGTCAGCCAGAATGTGGTTTATTGCTTACAGCATCAACTATATTGTTTTTTCTTCTACTATCTTCTTTGACAGTAGGCTTGGATGTTGTTGGCTACAGAAAAAAATATATTGCAGCTTGAAAGCCATTCACATCCATCTGCTATCTTTTGACTAAGCTAGACCTACTAGTAACTACAAATCATCCGTAAAATTCTACGGACATCATTGTAATTTGTCATGCATGACATTTCC

Ace file of the UniGene sp_v1.1_unigene469

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	1.0e-17	22%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	54%
Blast2go	kinase family protein	-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7SN24

Fln msg: your sequence is shorter than subject: 680 - 931

Fln protein: LDYTAPELVRSKMPTVSCASDIFSLGCLAYHLLARRPLLECNNNARMYTSKIAYLSHESFSNIPPELVQDLRQMLSANESLRPSALDFTGSLFFRDDTRLRALRFLDHMLERDNMQKSEFLKALSGMWKDFDARVLRYKVLPPLCAELRNVVMQPMILPMVLTIAESQDKLDFELSTLPALVPVLSSASGESLLLLVKHAGLIINKANQEHLIAHVLPLLVRAYDDADVRIQEEVLRRTVSLAKQLDFQVMKQSVMPRVHGLALKTTVAAVRVNALQCLGELVHWLDKQAVLEILQTLQRCTAVDHSAPTLMCTLGVANAIYKQYGLEFAAEHLLPLLVPLLVAQQLNLQQFAKYMLFVKEILRKIEEKRGVTLNEVSPSSDISSTSAIGMDGSNVDSLKTVGVISATVGKSSSSWDSEDWGSFAKGPKSNSSSNNMSTLNGNSSSYNSMTASVQSSSVLSGMQSIHSSPSTYASSVSSTCAPVDIEWPPPALASAAPMLYMSQSGSSSAFTEYGSWSSGHHGLQEAAIEKSMSNGLADVSVGPTSSIDDIDPFADWPPRTNSGFNNQSWDRIGAGSMSSSGKAPVQNPASSLSWSTLGPSMPNGSLAVPANQQQLDIGSIFASAKTEPAALKIAPPPPSGMGRGRGRGKGRSQILSSNSSRNSNAKPPADQSPLLDLL*

Protein Length: 681

Fln nts: CTTGGACTATACAGCTCCAGAACTGGTCAGGAGTAAGATGCCAACTGTTAGCTGTGCATCTGATATATTCAGTCTTGGATGCCTTGCTTACCATTTGCTTGCTCGCAGACCTCTTCTGGAATGTAACAACAATGCTCGGATGTATACAAGTAAGATAGCATACTTGTCCCATGAGAGCTTTTCAAACATCCCTCCAGAGCTTGTACAGGATTTACGGCAAATGCTTAGTGCAAACGAATCATTAAGGCCAAGTGCTTTGGATTTCACAGGTTCTCTCTTCTTTCGTGATGATACAAGATTACGTGCTCTCCGTTTCCTTGATCATATGCTTGAGAGAGATAACATGCAGAAGTCCGAGTTTCTGAAAGCTTTGTCAGGGATGTGGAAAGACTTTGATGCTCGTGTGTTACGGTACAAAGTATTGCCACCACTATGTGCAGAACTTCGTAATGTTGTCATGCAACCAATGATTCTACCCATGGTCCTTACTATAGCGGAATCTCAGGACAAGCTTGATTTTGAACTTTCAACACTGCCAGCTTTGGTTCCTGTATTGTCTTCTGCATCTGGAGAATCATTGTTGCTCTTGGTTAAACATGCTGGCCTTATTATCAACAAGGCCAATCAAGAGCATTTGATAGCACATGTGCTTCCTTTGTTAGTTCGGGCTTATGATGATGCTGATGTCAGAATACAAGAAGAAGTTTTACGACGGACAGTCTCTCTTGCTAAACAGCTTGATTTTCAGGTTATGAAACAATCTGTTATGCCTCGTGTTCATGGGTTGGCGCTAAAAACTACAGTTGCTGCTGTGCGAGTAAATGCATTGCAATGTTTAGGAGAACTGGTACATTGGCTAGATAAGCAAGCGGTTCTAGAGATCTTACAAACATTGCAAAGGTGTACTGCTGTTGATCATTCTGCACCTACACTAATGTGTACTCTCGGTGTTGCAAATGCAATATACAAGCAGTATGGCTTAGAGTTTGCAGCAGAACATTTGCTTCCTCTCCTTGTCCCGTTACTGGTTGCACAACAGTTGAATCTTCAACAATTTGCCAAGTACATGCTCTTTGTGAAGGAGATCCTTCGGAAAATTGAGGAGAAGCGTGGTGTGACTCTTAATGAAGTAAGTCCATCCTCGGATATCAGTTCAACATCTGCCATAGGAATGGATGGATCTAATGTTGATTCCCTGAAGACAGTGGGTGTGATTTCAGCCACAGTAGGGAAATCTAGCAGCTCGTGGGATTCAGAAGATTGGGGTTCATTTGCTAAAGGTCCAAAAAGCAATAGCTCCTCAAATAATATGTCAACCCTAAATGGCAATTCATCGTCTTACAACTCAATGACAGCTTCTGTTCAGAGCTCCAGTGTGCTAAGTGGAATGCAGTCAATTCATTCTAGCCCTTCTACATATGCATCATCTGTCAGTTCGACATGTGCACCAGTAGATATTGAGTGGCCACCTCCAGCACTTGCATCGGCAGCACCTATGCTTTACATGTCTCAATCAGGTTCCTCATCAGCTTTTACCGAATATGGAAGTTGGTCATCTGGACATCATGGTCTTCAGGAGGCAGCAATCGAGAAATCAATGTCTAATGGTCTTGCTGATGTATCTGTTGGACCAACCTCCAGCATTGATGACATTGATCCCTTTGCTGACTGGCCTCCACGTACTAATAGTGGATTCAATAATCAATCATGGGACCGAATTGGTGCAGGTTCAATGAGTAGTTCAGGCAAAGCTCCTGTTCAAAATCCTGCTAGTTCATTGAGCTGGTCTACCTTAGGTCCAAGCATGCCAAATGGTTCACTGGCTGTTCCTGCAAACCAACAGCAGTTAGATATTGGTTCAATATTTGCATCTGCTAAGACTGAACCTGCGGCTTTGAAGATTGCTCCACCTCCACCTTCTGGAATGGGCAGAGGAAGAGGAAGAGGAAAAGGAAGAAGTCAAATCCTTTCTAGTAATTCTTCCCGGAACAGTAATGCAAAGCCACCTGCTGATCAGTCTCCGCTTCTAGATTTGCTTTAA___TCTCCCTCCCGTAAGAGCTATGGTGAAGCTTGTTTCTATGTGAGTTATTTAATTTGCCATTATGTCCAAATATTTTGTGTGAGAAATAAGAGGAAGAAGTGGCCATGATCTATATGGCAAGATTATCGTTCATCTTCTTGTTTAAGCATGGTCGTGTAATTATTAGCATTATTCTTGAGCATGCAGTTGCTGTTTTGTATCATCTCATGCTGTTGTATTTTAGCTTCATATTCTAAAGAGATCTTGGAAGACAAAAAGCACTTCAGAATGATAGTGCAAGGGCCTTCATCATTAAAAGTATGGATACTCGGTTAATTTTGTAGATTTATGGGAGATTGTTTGTCATGCCAGACAATGAGTCTTGTAACAGTAAGGAAAACAATGTTCAAGTTAGTCAGCCAGAATGTGGTTTATTGCTTACAGCATCAACTATATTGTTTTTTCTTCTACTATCTTCTTTGACAGTAGGCTTGGATGTTGTTGGCTACAGAAAAAAATATATTGCAGCTTGAAAGCCATTCACATCCATCTGCTATCTTTTGACTAAGCTAGACCTACTAGTAACTACAAATCATCCGTAAAATTCTACGGACATCATTGTAATTTGTCATGCATGACATTTCC

Fln Alignment:

sp_v1.1_unigene469___LDYTAPELVRSKMPTVSCASDIFSLGCLAYHLLARRPLLECNNNARMYTSKIAYLSHESFSNIPPELVQDLRQMLSANESLRPSALDFTGSLFFRDDTRLRALRFLDHMLERDNMQKSEFLKALSGMWKDFDARVLRYKVLPPLCAELRNVVMQPMILPMVLTIAESQDKLDFELSTLPALVPVXXXXXXXXXXXXVKHAGLIINKANQEHLIAHVLPLLVRAYDDADVRIQEEVLRRTVSLAKQLDFQVMKQSVMPRVHGLALKTTVAAVRVNALQCLGELVHWLDKQAVLEILQTLQRCTAVDHSAPTLMCTLGVANAIYKQYGLEFAAEHXXXXXXXXXXXXXXXXXXFAKYMLFVKEILRKIEEKRGVTLNEVXXXXXXXXXXAIGMDGSNVDSLKTV-GVISATVGKXXXXXXXXXXXXFAKGPKXXXXXXXXXXXXXXXXXYNSMTASVQSSSVLSGMQSIHXXXXXXXXXXXXTCAPVDIEWXXXXXXXXXXMLYMSQSGSSSAFTEYGSWSSGHHGLQEAAIEKSMSNGLADVSVGPTSSIDDIDPFADWPPR----------TNSGFNNQSWDRIGAGSMSSSGKAPVQNPASSLSWS-----TLGPSMPN------------------------------GSLAVPANQQQLDIGSIFASAKTEPAALKIA
D7SN24_____________LNYTAPELVRSRGSPAGSASDIFSFGCLAYHLIAHKPLFDCHNNVKMYTNSLTYLTNEAFTSIPPELVPDLQRMLSTNESFRPTALEFTGSPFFRDDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNLVMQPMILPMVLTIAESQDKNEFELYTLPALVPVLSTASGETLLLLVKHAELIINKTSHEHLVSHVLPLLVRAYDDNDARIQEEVLRRSAFLAKQLDAQLVKQAILPRVHGLALKTTVAAVRVNALLCLSDLVSTLDKHAVLDVLQTVQRCTAVDRSPPTLMCTLGIANSILKQYGIEFAAEHVLPLLTPLLIAQQLNVQQFAKYMLFVKDILRKIEEKRGVTLTDSGMPQVKTPSFS---DGLQSEALKKVSGTVSSAAKSSTSWDEDWGPTTKAPANSIQPSTISISSTLPYPSNQPIEVASMQPRSSLTSASSQH---------TASTCPPVDIEWPPR---------------ASSGMTP---------KLGDAANQKPNTGSPS------TSTFDDIDPFADWPPRPGGSLNVSGSSNNGIVASSNNKYGTTSRSGAMNDVIFQTNSDMSWAFNTQKLVEPSRQNQGNSTFNSTSLNSGLNSQSSIGFMKQNQGISTLGSYNDKKTTDLGSIFASSKNDHAAPRLA

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
447	14		85		0.993533
450	85		14		0.993533
451			14	85	0.993533
502			12	87	0.992554
503		87	12		0.992554
504	87		12		0.992554
1298		16		83	0.994512
1319	14	85			0.993533
1321	85		14		0.993533
1322	85		14		0.993533
1323	85		14		0.993533
1648		10		90	0.90298
1678	88		11		0.923564
1788		87		12	0.992554
1937	85		14		0.993533
1939	85		14		0.993533
2210	46		53		1.0
2322	30		69		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1931	1949	AGAGGA AGAGGA AGAGGA A	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain