SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene451

Length: 1376 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene451

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF506 domain containing protein	-	-	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF506, plant	IPR006502	-	0.0	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS24

Fln msg: your sequence is shorter than subject: 313 - 378

Fln protein: ASRLLSGFGKESDEASNCSTKNGSDDSESDLAVMVYDFIENGSGSQEASGVAPAENGAAAILKFNETLQGLASSISSPERDLLCSVYQVLMNVNETDLVCQSSRASCNGSCIRHLVVKSLKCLGYNASLCKIEWNNSGRVPGGQYEYIDIIMPDRNPDPADRIIIDTDFRTQFEIARPVPQYQATLKLLPAIFIGKAAKLEQLLQIVSKAAKCSLNQNSMPLPPWRTLEYMKAKWFSAYERCSTTGSGGDRDLVIAKRTEAVSENKRCKEQLSHLRTFLKKETDTGFTALKSISNRGKIFGRAKPSRWSLAS*

Protein Length: 314

Fln nts: GCATCTCGCCTGTTGAGTGGTTTCGGTAAAGAATCGGATGAAGCTTCTAATTGTAGCACTAAAAATGGCAGCGACGACAGCGAGAGCGATCTCGCGGTCATGGTGTACGACTTTATCGAGAACGGGAGCGGTTCTCAAGAAGCTAGCGGTGTCGCTCCAGCGGAAAACGGAGCTGCGGCTATCCTTAAATTCAACGAGACTCTTCAGGGTTTAGCGTCGTCCATCTCTTCACCTGAAAGAGATTTACTCTGTAGCGTGTATCAAGTACTGATGAATGTGAACGAGACAGATTTGGTTTGTCAAAGCTCCCGTGCAAGCTGTAACGGAAGTTGCATCAGGCATCTGGTAGTGAAAAGCTTAAAATGCTTGGGATACAATGCCTCTCTTTGCAAGATCGAATGGAACAACTCCGGAAGAGTTCCTGGAGGCCAGTATGAATACATTGACATAATCATGCCCGATCGAAATCCTGACCCAGCCGATCGCATAATAATTGACACAGATTTCCGAACACAGTTCGAGATTGCGAGGCCTGTTCCGCAATACCAGGCGACCTTGAAGCTGCTGCCGGCTATCTTTATTGGCAAGGCGGCAAAGTTGGAGCAGCTTCTGCAGATCGTGTCTAAAGCTGCGAAGTGTTCGTTGAACCAAAACTCCATGCCTCTTCCTCCATGGAGAACACTGGAGTACATGAAAGCCAAATGGTTCTCCGCTTACGAAAGATGCAGCACTACGGGATCAGGAGGAGACCGAGACCTTGTCATTGCCAAGCGCACAGAGGCCGTCTCCGAAAATAAACGCTGCAAAGAGCAGTTATCACATCTCAGAACTTTCTTGAAGAAAGAAACGGACACCGGATTTACAGCGCTGAAAAGCATATCAAATAGAGGTAAAATATTCGGCAGAGCCAAGCCTAGTCGCTGGTCCCTGGCTAGCTGA___TCTTGTGATGCGGCCACCTGCAACTAGTCAGACTTAGTTGTTTAGGTTTGGCTGTAACTAATTTTCTGTCCATGAGGGGAATCGAACAATCACGGATGCCCTGGCCTCTATCTGTTAACGATTTTAATACAAACAACTGCTTGCATTCTGAACATATTGTCATAAAATGCTACATTGGATATTCAATCCACATTCTATCAGTCAAGTTCTCAACCGTTGTCAGCATTCATGTGCTTCATCAAACGCATTGAATTACGTTTCAGTGATGTTGACTGATCAGCAAGGAAAACCTCACTAATATCAACAATCACACGGACCTTAACCTATGGATCTAAATTTGGGATCATGTTTTTCCATAATGTTCAGCTTAATCAAGAAATTGAAAGAGAACTGACTCGTATAAATTGCGATACATCGTAAGTAATAATTTCTCTGAT

Fln Alignment:

sp_v1.1_unigene451___ASRLLSGFGKESDEASNCSTKNGSDDSESDLAVMVYDFIENGSGSQEASGVAPAENGAAAILKFNETLQGLASSISSPERDLLCSVYQVLMNVNETDLVCQSSRASCNGSCIRHLVVKSLKCLGYNASLCKIEWNNSGRVPGGQYEYIDIIMPDRNPDPADRIIIDTDFRTQFEIARPVPQYQATLKLLPAIFIGKAAKLEQLLQIVSKAAKCSLNQNSMPLPPWRTLEYMKAKWFSAYERCSTTGSGGDRDLVIAKRTEAVSENKRCKEQLSHLRTFLKKETDTGFTALKSISNRGKIFGRAKPSRWSLAS
B8LS24_____________ASRLLSGFGKESDEASSCSAKNGSDDSESDLAVMVHDFIENGSGAQDVSGVAPAENGAATILKLNETLQGLASSISSPERDLLSSIYQVLMNVNDTDLVCQSSRASCNGSCIRHLVVKSLKCSGYNASLCKIEWNNSGRVPGGQYEYIDIIVPDRNPNPADRIIIDTDFRTQFEVARPVPQYQATLKLLPAIFIGKAAKLEQILQIVCKAAKCSLNQNSMPLPPWRTLEYMKAKWFSAYERCSTTGSGEDRDPLIAKRTEVVSENKRCKEQLSHLRTFLKKETDTGFTALKSISNRGKIFGRAKPSRWSLAS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
479		88		11	0.923564
621		15	84		0.999986
787	10			90	0.90298
990	25		75		1.0
1039		88		11	0.923564
1088		14		85	0.993533
1091	83		16		0.994512
1122			14	85	0.993533
1123		85	14		0.993533
1182	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain