SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene442

Length: 2268 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene442
TGGACTCCTACTTCCATGTCTGTCCTCTCTTCGTTCATTCGAAGGGGAAAAAGAAGCGCGGAGCGAAAAACGCACAGCAACGGGGCTCTCAGGTTTCAGGTTGCAACCACCCTCCTGCCACTCTACAAGATTTGTGGTCCAATTCCCCACGCCACTCTCAAAATTGAGCTTCAAAGCAGACTCACGGAAACTGGCCTCTGTTATCGCACGATCGCATGTTCAATTCCCCCGGCTGCCTCCTGCAGGTCTCGAGTTCAATTCCCATCCCAGTCCAGAAATGACGAATGAATTTCATTCCAACGGCTTCACGAACGGAGATAAGCTCAATTTCCCACATACAAACGGCGCAACGGAGCATCAGCAGGCCATCAATGGCAGCGACGGTCCGGGGAAGCCCAGCAACAACGTCGCAGAGGAGAGACTAGACGAGCTCCGTCAATTGCTGGGAAAATCGAGGGGCGACGTGCTGAGGATCGCTGGTGTGGGGGCAGGGGCCTGGGGCAGCGTCTTCGTAGCCCTACTGCAGGACGCTTACGGAAGCTTTAGGGACAAAATGCAGGTTAGAATATGGCGGAGGCCCGGCAGGTCGGTGGATCGAGCTACGGCGGAGCATTTATTCGAGGTCATTAACTCCAGGGAAGATGTTCTCAGACGCCTGATCAGGCGTTGTGCCTATCTTAAATACGTAGAGGCCAGGCTCGGGGATCGCGTTCTGTATGCCGACGAGATTCTGAAAGACGGTTTCTGTTTGAATATGATCGATACACCGCTCTGCCCGCTGAAAGTTGTGACGAATTTGCAGGAGGCCGTGTGGGATGCCGACATTGTTATCAACGGCCTCCCTTCGACAGAGACTAAGGAGGTTTTTGAAGAAATTAGCAGGTATTGGAAGGAGCGGAGGACTATGCCAATTATTATTTCGCTGGCGAAGGGGGTTGAAGCGGCTTTGACACCTTTTCCGCGCATTATCACTCCCACGCAGATTATCTGTCGAGCTACTGGAGTGCCCACAGAGAACATCCTTTATTTGGGAGGACCAAATATAGCTTCAGAGATATACAACAAGGAGTATGCCAATGCTAGAATATGTGGATCTGACAAATGGAGAAAGCCTCTAGCAAAGTTTCTACGTCAGCCCCATTTCATTGTTTGGGACAATAATGACCTTGTTACTCATGAAGTTATGGGTGGTTTGAAGAATGTTTATGCCATTGGTGCTGGTATGGTTGCAGCTTTGACAAATGAGAGTGCCACTAGTAAATCAGTCTATTTTGCCCATTGCACATCGGAAATGATATTTATAACTCACCTTATTGCTGAAGAACCAGAGAAATTAGCTGGTCCTTTGCTGGCTGACACATATGTTACATTGTTGAAGGGGCGGAATGCATGGTATGGGCAGATGCTAGCCAAAGGAGAACTGAGGCCAGATATGGGGGATAGCATCAAAGGCAAGGGAATGATTCAGGGTGTGTCAGCTGTAGGGGCATTTTACGAGTTGCTTAGTCATTCTAGCTTAAGCTTCATGCATCCTGATGGAAATAAACCCATAGCACCAGTGGAGTTGTGCCCCATTTTGAAGACTCTTTACAGTATATTGATTACAAGGGACTCTTCAACACAGGCAATTCTTCAAGCATTACGGGATGAGACCATGCATGATCCTCGGGAGCGAATTGAAATTGCCCAGAGTCATGCTTTCTACAGGCCTTCACTCCTAGGGCAATCTCAATAAAGTTCAATGAGAGTGGTTGGCTTATTGGTACTGCATGTAGGAAATTGAGTTCTTGCTAAGCCGAAGTCATTGGAATCTGTTTTATCATTCCGTCCTTCCTTTTCCTTTTGTGTATAAGTTTATTCGTTTACATATTTGGAAGCTACAAGGCAGACTTTGCAAAGTGTTCTGTATAAGGGAAACATGCAACTTTAATATATTATATCAATCTGATTTCCCAGTATTCCATGTTTTGGCGAAACATGCAAGAGCCTCCCACTTTTCTTCCTTAGCAAACGCGTGTTTTGATTTCTTTAGTTGGTAAGGAATGGGGAATATAAAATTAGTTCTGCGATGGAATGTTTGCTAATCAAAGAGTGTTGTGAAGGGAAGATACGCCCCCTGTTAATTGAACGCTAACATGTATATTTAAACGTTTCAACCTTTCCAACGCTTTACTCGTGCACAAAATATTAGAGAATTATCAATGTAGAAGAATGCTAAAAGTGATTCAAGATTAGCAAATGGCCTTGTTTACTCTATTTAGTGTAGAG

Ace file of the UniGene sp_v1.1_unigene442

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glycerol-3-phosphate dehydrogenase, putative (EC:1.1.1.94)	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	glycerol-3-phosphate dehydrogenase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glycerol-3-phosphate dehydrogenase (NAD(+)).	EC:1.1.1.8	-	0.0	91%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerophospholipid metabolism	00564		0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	91%
Blast2go	binding	GO:0005488	Molecular Function	91%
Blast2go	glycerol-3-phosphate dehydrogenase [NAD+] activity	GO:0004367	Molecular Function	91%
Blast2go	cytosol	GO:0005829	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Blast2go	Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal	IPR006109	-	91%
Blast2go	Glycerol-3-phosphate dehydrogenase, NAD-dependent	IPR006168	-	91%
Blast2go	6-phosphogluconate dehydrogenase, C-terminal-like	IPR008927	-	91%
Blast2go	Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal	IPR011128	-	91%
Blast2go	Dehydrogenase, multihelical	IPR013328	-	91%
Blast2go	NAD(P)-binding domain	IPR016040	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAK9

Fln msg: your sequence is longer than subject: 486 - 393

Fln protein: MTNEFHSNGFTNGDKLNFPHTNGATEHQQAINGSDGPGKPSNNVAEERLDELRQLLGKSRGDVLRIAGVGAGAWGSVFVALLQDAYGSFRDKMQVRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRVLYADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERRTMPIIISLAKGVEAALTPFPRIITPTQIICRATGVPTENILYLGGPNIASEIYNKEYANARICGSDKWRKPLAKFLRQPHFIVWDNNDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLIAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGELRPDMGDSIKGKGMIQGVSAVGAFYELLSHSSLSFMHPDGNKPIAPVELCPILKTLYSILITRDSSTQAILQALRDETMHDPRERIEIAQSHAFYRPSLLGQSQ*

Protein Length: 487

Fln nts: TGGACTCCTACTTCCATGTCTGTCCTCTCTTCGTTCATTCGAAGGGGAAAAAGAAGCGCGGAGCGAAAAACGCACAGCAACGGGGCTCTCAGGTTTCAGGTTGCAACCACCCTCCTGCCACTCTACAAGATTTGTGGTCCAATTCCCCACGCCACTCTCAAAATTGAGCTTCAAAGCAGACTCACGGAAACTGGCCTCTGTTATCGCACGATCGCATGTTCAATTCCCCCGGCTGCCTCCTGCAGGTCTCGAGTTCAATTCCCATCCCAGTCCAGAA_-_ATGACGAATGAATTTCATTCCAACGGCTTCACGAACGGAGATAAGCTCAATTTCCCACATACAAACGGCGCAACGGAGCATCAGCAGGCCATCAATGGCAGCGACGGTCCGGGGAAGCCCAGCAACAACGTCGCAGAGGAGAGACTAGACGAGCTCCGTCAATTGCTGGGAAAATCGAGGGGCGACGTGCTGAGGATCGCTGGTGTGGGGGCAGGGGCCTGGGGCAGCGTCTTCGTAGCCCTACTGCAGGACGCTTACGGAAGCTTTAGGGACAAAATGCAGGTTAGAATATGGCGGAGGCCCGGCAGGTCGGTGGATCGAGCTACGGCGGAGCATTTATTCGAGGTCATTAACTCCAGGGAAGATGTTCTCAGACGCCTGATCAGGCGTTGTGCCTATCTTAAATACGTAGAGGCCAGGCTCGGGGATCGCGTTCTGTATGCCGACGAGATTCTGAAAGACGGTTTCTGTTTGAATATGATCGATACACCGCTCTGCCCGCTGAAAGTTGTGACGAATTTGCAGGAGGCCGTGTGGGATGCCGACATTGTTATCAACGGCCTCCCTTCGACAGAGACTAAGGAGGTTTTTGAAGAAATTAGCAGGTATTGGAAGGAGCGGAGGACTATGCCAATTATTATTTCGCTGGCGAAGGGGGTTGAAGCGGCTTTGACACCTTTTCCGCGCATTATCACTCCCACGCAGATTATCTGTCGAGCTACTGGAGTGCCCACAGAGAACATCCTTTATTTGGGAGGACCAAATATAGCTTCAGAGATATACAACAAGGAGTATGCCAATGCTAGAATATGTGGATCTGACAAATGGAGAAAGCCTCTAGCAAAGTTTCTACGTCAGCCCCATTTCATTGTTTGGGACAATAATGACCTTGTTACTCATGAAGTTATGGGTGGTTTGAAGAATGTTTATGCCATTGGTGCTGGTATGGTTGCAGCTTTGACAAATGAGAGTGCCACTAGTAAATCAGTCTATTTTGCCCATTGCACATCGGAAATGATATTTATAACTCACCTTATTGCTGAAGAACCAGAGAAATTAGCTGGTCCTTTGCTGGCTGACACATATGTTACATTGTTGAAGGGGCGGAATGCATGGTATGGGCAGATGCTAGCCAAAGGAGAACTGAGGCCAGATATGGGGGATAGCATCAAAGGCAAGGGAATGATTCAGGGTGTGTCAGCTGTAGGGGCATTTTACGAGTTGCTTAGTCATTCTAGCTTAAGCTTCATGCATCCTGATGGAAATAAACCCATAGCACCAGTGGAGTTGTGCCCCATTTTGAAGACTCTTTACAGTATATTGATTACAAGGGACTCTTCAACACAGGCAATTCTTCAAGCATTACGGGATGAGACCATGCATGATCCTCGGGAGCGAATTGAAATTGCCCAGAGTCATGCTTTCTACAGGCCTTCACTCCTAGGGCAATCTCAATAA___AGTTCAATGAGAGTGGTTGGCTTATTGGTACTGCATGTAGGAAATTGAGTTCTTGCTAAGCCGAAGTCATTGGAATCTGTTTTATCATTCCGTCCTTCCTTTTCCTTTTGTGTATAAGTTTATTCGTTTACATATTTGGAAGCTACAAGGCAGACTTTGCAAAGTGTTCTGTATAAGGGAAACATGCAACTTTAATATATTATATCAATCTGATTTCCCAGTATTCCATGTTTTGGCGAAACATGCAAGAGCCTCCCACTTTTCTTCCTTAGCAAACGCGTGTTTTGATTTCTTTAGTTGGTAAGGAATGGGGAATATAAAATTAGTTCTGCGATGGAATGTTTGCTAATCAAAGAGTGTTGTGAAGGGAAGATACGCCCCCTGTTAATTGAACGCTAACATGTATATTTAAACGTTTCAACCTTTCCAACGCTTTACTCGTGCACAAAATATTAGAGAATTATCAATGTAGAAGAATGCTAAAAGTGATTCAAGATTAGCAAATGGCCTTGTTTACTCTATTTAGTGTAGAG

Fln Alignment:

sp_v1.1_unigene442___MQVRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRVLYADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERRTMPIIISLAKGVEAALTPFPRIITPTQIICRATGVPTENILYLGGPNIASEIYNKEYANARICGSDKWRKPLAKFLRQPHFIVWDNNDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLIAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGELRPDMGDSIKGKGMIQGVSAVGAFYELLSHSSLSFMHPDGNKPIAPVELCPILKTLYSILITRDSSTQAILQALRDETMHDPRERIEIAQSHAFYRPSLLGQSQ
D5AAK9_____________MQVRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRVLYADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERRTMPIIISLAKGVEAALTPFPRIITPTQIICRATGVPIENVLYLGGPNIASEIYNKEYANARICGSDKWRKPLAKFLRQPHFIVWDNNDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLIAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGELRPDMGDSIKGKGMIQGVSAVGAFYELLSHSSLSFMHPDGNKPVAPVELCPILKTLYSILITRDSSTHAILQALRDETMHDPRERIEIAQSHAFYRPSLLGQSQ

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
323	80		20		0.999996
392			66	22	0.999999
411		88	11		0.923564
582		75		25	0.996473
603		75		25	0.996473
612	75		25		0.996473
1719	66	33			0.997452
1726		66		33	0.997452
1728	66	33			0.997452
1811	25		75		0.996473
1855	18		81		1.0
1958	12		87		0.992554
1959	12	12	12	62	0.962769
1960	80	20			0.995493
2013	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain