SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene414

Length: 1999 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene414
ATGGGGCGGCCTCCTGTTCGAGTCCCGCCAGGGATCGTTTTAACGCAAAAATTTTCTTGACCACCCTCTCAGGAAATATTCAGTAGGGTTTTAACATAGAAAATCCCAGTGAGGCAGTTTCTATGGTTCAGTGACGAGGATGGCCACCAATGGAGGAACACCGACAACACCACCGCAGGCAACAACGGCACAGACGCCGACAAACAATGATAAAAAGCCCACTAAAGGAGTAGATGCCTTCGGCCGAGCGGTTGCGCGAATTGCAGTGGCACAGATATGCGAAGGTGCCGGGTTCCAATCCTGCCAGCAATCCGCCCTCGAAGCTCTGGCAGATATCTCCGTACGCTACCTCTGCGACCTCGGTAAGGCCGCTCAATACTACGCTGGCCTCGCGGGCAGAACGGAATGCAACGCCTTCGATGTGATACACGCCATGGAGGACATGTTTGCTGCGCAGGGCTTCGTGGGCGCCTCGGATGTGATCGGTCACTCGGTCTCGGGGTCGGGTACCGTGCGTGAAATCATGCAGTACACCAAACGAGCGGAAGAGATCCCGTTCGCTCGCCCTGTGCCGCGGTTCCCCGTGGTGAAAAAACGGAATCTTTTGCCTACATTTCTGCAGATGAAGGAAACCCCAGCGCATCAACACATTCCCCCATGGCTGCCCGCGTTCCCTGATTCGCACACTTATAAGAACACTCCTGTGTGGAACGAGCGGAAAACGGATCCTCAGGTGGCCAAGATCGAGCAGGCCAGGCAGCGGCGGCAGGCTGAGCGGTCGCTGGTGAGTTTGCAGCAGCGCCTGGCATCGGCTTCCGGGTCCTCTTCTCTAGGGCTCGCCATGGAAACNGNTGNCANNNGAAAAAACCCTAGCCCTAGCCCAAATCCCAACCCCAACTCTAATAACCCCTTTCTCGCTCCGCCCGTTGGTCCCGAGGAGAAACAGGTAAGCCCTGTCAAGCTTCCCTCGGTGCTGGCCCGTCCGGCGGTTAAACTCCCTTCTGTCGTGGAGGCCTTTGCTCCAGCCATTGATGCCGTCAAGCAGGGTCTTGATCAGGTCGAAGAGCTCGATGGGCGGAGGAAGAATCCTCGCGGGAGTCAGGCGCTGTCTGATGAGAGACCCCTTGTGCAATTTAAATTTGATTTTGGAAAGAAGGCACAAATGGCTGCCCATGCGGCAGGAGCACAGCGAAATGAGACGCCGCTGAGTTCTTGGTTTAGCAGAGACGAGGAGATAGATGATAAGAAGAGAAGGGTAGAGCAGATATTGAAAGAAGCCATGGAAAACCCTCAAGACTTGGTACAGCTGTGAAGATGGCACAAAATTTTGTCCTCCGTTGTGACTTGAAAATCAACCAAGTGGGTTGGGAATTCGCCGCATCTTGAGTGTTCCAATTGTGAATTTTTAGCAACAGGTTGCGATGAGCTTCTGCTAGATTTGGAAAACAATGTATAAGTAGTATCGCTTGCTGGAGAAGAGTCTATCCGATTGCTCGTGATTTCAGACCTGGTTTGGATGAGTCGCAGCTAAATTTCATAGACATTTATGTATTCATCACTCACCGGAAGTAGGTGTATCTGCTATCGTATCTGCTATCATCTGAATGTCAACATTTATAAAAGAAATATTTATTGTGAAGGCCAGTCGCAATGGGAAACTTGTTGATTGGCTTGGTTTGAAAATCCTTACAGTTAATATGCTTACTTATTCGTTATAAATGCAGAGAATTAAACTAAAAAATGAGTATCAAAGCATATTCAGAACTATCTTTATGATCAATCTAGCCAAATCTAGCCATGTTAACATCCTTGAAGGCGTGAAATTAGAGTTAACTTTCTCACTCATTGGATTCTGTCCATTTATAGGATGATTATTGCTATATATGATGTTATACGTATTTAGATGTCCAATAGTAGTAAAAAGTTGTCTATCCACTTCTTGACCGAGATGTGTTTGATAAGGATGTAATGCACTTTGTAATTTCTACATCCCATCGGC

Ace file of the UniGene sp_v1.1_unigene414 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	tbp-associated factor taf, putative	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	60%

Source	InterPros	Term	Type	Identity
Blast2go	Bromodomain transcription factor	IPR006565	-	60%
Blast2go	Histone-fold	IPR009072	-	60%
Blast2go	Transcription factor TFIID, subunit 8, C-terminal	IPR019473	-	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2L4

Fln msg:

Fln protein: MATNGGTPTTPPQATTAQTPTNNDKKPTKGVDAFGRAVARIAVAQICEGAGFQSCQQSALEALADISVRYLCDLGKAAQYYAGLAGRTECNAFDVIHAMEDMFAAQGFVGASDVIGHSVSGSGTVREIMQYTKRAEEIPFARPVPRFPVVKKRNLLPTFLQMKETPAHQHIPPWLPAFPDSHTYKNTPVWNERKTDPQVAKIEQARQRRQAERSLVSLQQRLASASGSSSLGLAMETVAK*KNPSPSPNPNPNSNNPFLAPPVGPEEKQVSPVKLPSVLARPAVKLPSVVEAFAPAIDAVKQGLDQVEELDGRRKNPRGSQALSDERPLVQFKFDFGKKAQMAAHAAGAQRNETPLSSWFSRDEEIDDKKRRVEQILKEAMENPQDLVQL*

Protein Length: 392

Fln nts: ATGGGGCGGCCTCCTGTTCGAGTCCCGCCAGGGATCGTTTTAACGCAAAAATTTTCTTGACCACCCTCTCAGGAAATATTCAGTAGGGTTTTAACATAGAAAATCCCAGTGAGGCAGTTTCTATGGTTCAGTGACGAGG_-_ATGGCCACCAATGGAGGAACACCGACAACACCACCGCAGGCAACAACGGCACAGACGCCGACAAACAATGATAAAAAGCCCACTAAAGGAGTAGATGCCTTCGGCCGAGCGGTTGCGCGAATTGCAGTGGCACAGATATGCGAAGGTGCCGGGTTCCAATCCTGCCAGCAATCCGCCCTCGAAGCTCTGGCAGATATCTCCGTACGCTACCTCTGCGACCTCGGTAAGGCCGCTCAATACTACGCTGGCCTCGCGGGCAGAACGGAATGCAACGCCTTCGATGTGATACACGCCATGGAGGACATGTTTGCTGCGCAGGGCTTCGTGGGCGCCTCGGATGTGATCGGTCACTCGGTCTCGGGGTCGGGTACCGTGCGTGAAATCATGCAGTACACCAAACGAGCGGAAGAGATCCCGTTCGCTCGCCCTGTGCCGCGGTTCCCCGTGGTGAAAAAACGGAATCTTTTGCCTACATTTCTGCAGATGAAGGAAACCCCAGCGCATCAACACATTCCCCCATGGCTGCCCGCGTTCCCTGATTCGCACACTTATAAGAACACTCCTGTGTGGAACGAGCGGAAAACGGATCCTCAGGTGGCCAAGATCGAGCAGGCCAGGCAGCGGCGGCAGGCTGAGCGGTCGCTGGTGAGTTTGCAGCAGCGCCTGGCATCGGCTTCCGGGTCCTCTTCTCTAGGGCTCGCCATGGAAACgGtTGcCAagtGAAAAAACCCTAGCCCTAGCCCAAATCCCAACCCCAACTCTAATAACCCCTTTCTCGCTCCGCCCGTTGGTCCCGAGGAGAAACAGGTAAGCCCTGTCAAGCTTCCCTCGGTGCTGGCCCGTCCGGCGGTTAAACTCCCTTCTGTCGTGGAGGCCTTTGCTCCAGCCATTGATGCCGTCAAGCAGGGTCTTGATCAGGTCGAAGAGCTCGATGGGCGGAGGAAGAATCCTCGCGGGAGTCAGGCGCTGTCTGATGAGAGACCCCTTGTGCAATTTAAATTTGATTTTGGAAAGAAGGCACAAATGGCTGCCCATGCGGCAGGAGCACAGCGAAATGAGACGCCGCTGAGTTCTTGGTTTAGCAGAGACGAGGAGATAGATGATAAGAAGAGAAGGGTAGAGCAGATATTGAAAGAAGCCATGGAAAACCCTCAAGACTTGGTACAGCTGTGA___AGATGGCACAAAATTTTGTCCTCCGTTGTGACTTGAAAATCAACCAAGTGGGTTGGGAATTCGCCGCATCTTGAGTGTTCCAATTGTGAATTTTTAGCAACAGGTTGCGATGAGCTTCTGCTAGATTTGGAAAACAATGTATAAGTAGTATCGCTTGCTGGAGAAGAGTCTATCCGATTGCTCGTGATTTCAGACCTGGTTTGGATGAGTCGCAGCTAAATTTCATAGACATTTATGTATTCATCACTCACCGGAAGTAGGTGTATCTGCTATCGTATCTGCTATCATCTGAATGTCAACATTTATAAAAGAAATATTTATTGTGAAGGCCAGTCGCAATGGGAAACTTGTTGATTGGCTTGGTTTGAAAATCCTTACAGTTAATATGCTTACTTATTCGTTATAAATGCAGAGAATTAAACTAAAAAATGAGTATCAAAGCATATTCAGAACTATCTTTATGATCAATCTAGCCAAATCTAGCCATGTTAACATCCTTGAAGGCGTGAAATTAGAGTTAACTTTCTCACTCATTGGATTCTGTCCATTTATAGGATGATTATTGCTATATATGATGTTATACGTATTTAGATGTCCAATAGTAGTAAAAAGTTGTCTATCCACTTCTTGACCGAGATGTGTTTGATAAGGATGTAATGCACTTTGTAATTTCTACATCCCATCGGC

Fln Alignment:

sp_v1.1_unigene414___DKKPTKGVDAFGRAVARIAVAQICEGAGFQSCQQSALEALADISVRYLCDLGKAAQYYAGLAGRTECNAFDVIHAMEDMFAAQGFVGASDVIGHSVSGSGTVREIMQYTKRAEEIXXXXXXXXXXXXXXRNLLPTFLQMKETPAHQHIPPWLPAFPDSHTYKNTPVWNERKTDPQVAKIXXXXXXXXXXRSLVSLQQRXXXXXXXXXXXXAMETVAK*KXXXXXXXXXXXXXXPFLAPPVGPEEKQVSPVKLPSVLARPAVKLPSVVEAFAPAIDAVKQGLDQVEELDGRRKNPRGSQALSDERPLVQFKFDFXXXXXXXXXXXXXQRNETPLSSWFSRDEEIDDKKRRVEQILKEAMENPQDLVQL
A9P2L4_____________EKKPDGGVDAFGRAVARIAVAQICEGAGFQSCQQSALEALADIAVRYLRDLGKAAHYYAGLAGRTECNAFDVIHAMEDMFAAQGFVGASDVISHSVSGSGTVREIMQYTNRAEEIPFARPVPRFPVVKKRELLPTFLQMKETPPHQHIPPWLPAFPDSHTYKSTPVWNERKTDPRMAKMEQARQRRKAERSLVSLQQRLASASGSSSLGLAMETDGKGK--NSSPSPNPNPNNPFLAPPVGPEEKQVSPVKIPPVLSRPALKLPSVLEAFAPAIDAVKQGLDQVEELDGRRKNPRGSQALSDERPLVQFKFDFGKKAQMAAHATGALRNETPLSSWFSRDEEMDDKKRRVEQILKEAMENPQDLVQL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1592	20		80		0.995493
1645		83		16	0.994512
1724	10			90	0.90298
1732	10	90			0.90298
1767	11			88	0.923564
1850	83	16			0.994512
1914		66	33		1.0
1915	33	66			1.0
1916		66	33		1.0
1921	33			66	1.0
1923	66	33			1.0
1924	66	33			1.0
1925	33			66	1.0
1927			33	66	1.0
1928			33	66	1.0
1931	33	66			1.0
1932		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain