SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene412

Length: 1231 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene412

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nodulin MtN3 family protein	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	protein	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RAG1-activating protein-1-related	IPR004316	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8D3

Fln msg:

Fln protein: MLSYEEIWHYAAGIAGNLFALGLFLSPIPTFSRTTRNRSTKQFSVLPYIFALFNCLICTWYGLPFVSQNNILVTTVNAAGAIFQLFYISLYIAYCQKEERVKMVALLLLVVGIVIAIVLVTYEFMEQPLRKLFVGSLSVFSLISMFASPLSIIKLVIETRSVEFMPFYLSLSTFLMSVSFFAYGFLGQDPFVYVPNGIGSVLGMIQLGLYFSYRDIGRRRQAAQPLLSSTA*

Protein Length: 233

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCCGTTCGTGGCAGAGTTAGATTAGTTCGTATTTTGACATTTTTTTAGCATTTGCAGTGCGCAAACTATCCGCA_-_ATGTTGTCTTACGAAGAGATTTGGCACTACGCTGCTGGAATCGCAGGCAACTTGTTTGCTCTGGGCCTTTTCTTGTCCCCGATTCCTACATTCAGCAGAACAACAAGAAATAGGTCAACCAAGCAATTTTCAGTCCTCCCTTATATCTTTGCACTCTTTAATTGCTTGATTTGCACATGGTATGGCCTTCCTTTTGTATCACAGAACAATATACTGGTGACCACTGTTAATGCAGCGGGAGCCATTTTTCAGCTATTCTACATCTCACTCTATATTGCATATTGCCAGAAGGAAGAACGGGTTAAAATGGTAGCATTGCTTCTGTTGGTTGTGGGTATAGTTATTGCAATAGTGTTGGTGACATACGAATTTATGGAGCAGCCACTACGAAAGCTGTTCGTCGGTTCTCTTAGTGTATTCTCCCTCATCAGCATGTTTGCATCACCATTATCTATCATTAAGCTGGTAATTGAAACAAGAAGCGTGGAGTTTATGCCATTTTATCTCTCTCTTTCCACCTTTTTGATGAGTGTATCCTTTTTCGCATATGGATTCCTTGGCCAAGATCCTTTTGTTTATGTCCCAAATGGGATTGGCAGTGTTTTGGGCATGATACAGTTGGGGTTGTACTTCAGTTATCGCGACATTGGTCGGAGAAGGCAGGCTGCACAACCATTGCTGAGCTCAACTGCCTGA___GATTTTTCCCTACAAAATTGGCTGGCAGTGTTAGTTCACTCAGTGTTTGCTGCTTGAGTGTCAGATTCTTTACATAACAAATGATCATGCTTTCACCATCAGTCTGAATACATACATGTTTTGCGTATCGGAGCTTGATCACAGATTGGGATAAAATTTCCTCACTAGACTTTGAGCATGCTGTCCGGTAGCTGACCTTCGAGATTGGAATTGTAAAAATGTTTCAATGACTCGGGATTGCTGATTAAGCCGTAAATGTTTCCTTGCGGTTGGCAGAGTTCCTGCTAACTTGAGCAAGATAAAATCTCTATCGATTTTTCTAATTGTTTAGCAATTGAATCCAAAATAGATTTATGAAGACTCTTTAGACTTTGTAACATTTGCCATGATATACAAAATTAATTTACAGCCCAAAACGGAGGATCACATCAGAA

Fln Alignment:

sp_v1.1_unigene412___MLSYEEIWHYAAGIAGNLFALGLFLSPIPTFSRTTRNRSTKQFSVLPYIFALFNCLICTWYGLPFVSQNNILVTTVNAAGAIFQLFYISLYIAYCQKEERVKMXXXXXXXXXXXXXXXXXTYEFMEQPLRKLFVGSLSVFSLISMFASPLSIIKLVIETRSVEFMPFYLSLSTFLMSVSFFAYGFLGQDPFVYVPNGIGSVLGMIQLGLYFSYRDIGRRRQAAQPLLSSTA
D5A8D3_____________MMPDEEIWHYATGIADNFFALGLFLSPIPTFRRITKNKSTEQFSGLPYIFALLNCLICTWYGLPFVSRNNILVTTVNGTGAIFQLFYISLYIVYSQKEARVKMVVLLSLVMAIFISIVLVTYEFMKQPLRKVFVGSLSVISLVSMFASPLSIIKLVIETHSVEYMPFYLSLSTLLMSVSFFTYGFLGQDPFVYVPNGIGSVLGIIQLGLYFYYRNNRRRRQAVQPLLSSTA

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
224	66	33			0.997452
269		11		88	0.923564
271	88			11	0.923564
272		11		88	0.923564
273			11	88	0.923564
279	88	11			0.923564
281			88	11	0.923564
283			11	88	0.923564
284	88	11			0.923564
287			88	11	0.923564
289	11	88			0.923564
290		11		88	0.923564
293	11	88			0.923564
372		87		12	0.992554
373		12		87	0.992554
374	87		12		0.992554
375		12		87	0.992554
377			12	87	0.992554
380	12	87			0.992554
381	87		12		0.992554
384	12			87	0.992554
385			12	87	0.992554
471	75		25		0.996473
710	11		88		0.923564
768	23			76	1.0
817		16		83	0.999991
819			85	14	0.999981
823	14		78	7	0.999974
825	85	14			0.999981
826		7	78	14	0.999974
829			14	85	0.999981
830		14		85	0.999981
831	85			14	0.999981
834		21		78	1.0
1022	20	80			0.995493
1023	80	20			0.995493
1041	40		60		1.0
1079	16	83			0.994512
1082		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain