SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene407

Length: 1895 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene407

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calmodulin-binding heat-shock protein, putative n=1 Tax=Ricinus communis RepID=B9RIW9_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	68%
Blast2go	protein	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipase, class 3	IPR002921	-	0.0	78%
Blast2go	Mono-/di-acylglycerol lipase, N-terminal	IPR005592	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6H6L4

Fln msg:

Fln protein: MSLVCGIPLLECVYCLACARWAWKRCLHTGEQDSERWGYARREEFEPVPRLCRLILSVYEDDIRKPQWAPPGGYGINPEWILKKVTYEQTGGRAPPYVIYLDHENCDIVLAIRGLNMAMESDYAMLWDNKLGQKMFDGGFVHNGLLKSAAWLIDNEGDTIKELIEEYPNYTLTFTGHSLGSGIAALLALIVVNNRDLLGGIPRNQMRCFAFAPARCMSLNLAVRYADIVNSVVLQDDFLPRTATPLEDIFKSVFCLPCLLCGKCMSDTCIPEERMLADPRRLYAPGRLYHIVERKLCRCGRFPPVVKTAVPVEGRFEHIIISCNATSDHGIIWIERESQKALDLMIERERALEIPSEQKMQRQQTLANEHDKEYKAAIERAATLRMAQAYSPSYGTFDTVFDNNDNERTELFIEHGENFSEKSEIGEPSVTTKRKSKWDEMINKLIKKR*

Protein Length: 451

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTTTCCCATTTTCTTCTTCATGCATCGCCGTCAATACTCTTTTTCTTATTGATGAAGAAGAGATGCAGAGTGAGCTGAGAACAGATACTGGGCG_-_ATGTCATTGGTGTGCGGAATCCCCTTGCTGGAATGTGTGTATTGCCTAGCCTGTGCGCGATGGGCGTGGAAGCGGTGCCTGCATACCGGCGAACAAGACAGCGAGCGATGGGGCTATGCGAGGCGGGAGGAGTTCGAACCTGTGCCCCGTCTCTGCCGCCTCATCCTGTCCGTATACGAAGACGACATAAGGAAACCCCAGTGGGCTCCTCCGGGAGGATACGGGATCAATCCGGAGTGGATCCTCAAGAAAGTCACTTACGAGCAGACTGGGGGCCGAGCTCCTCCTTATGTTATCTACTTGGATCATGAAAATTGCGACATTGTGCTGGCAATCCGAGGCCTGAACATGGCGATGGAAAGCGATTATGCCATGCTCTGGGACAACAAGCTCGGCCAGAAGATGTTCGACGGGGGTTTTGTTCATAATGGGCTCTTGAAATCCGCTGCCTGGCTTATCGACAATGAGGGCGATACGATTAAAGAGTTGATCGAGGAATACCCGAATTACACTCTCACTTTTACTGGGCACTCGCTTGGGTCCGGTATAGCGGCACTCCTGGCTTTGATCGTGGTCAACAACAGGGACTTGTTGGGTGGAATACCTAGGAATCAGATGAGATGTTTTGCATTTGCTCCGGCCAGATGCATGTCTCTCAACTTGGCTGTCAGATATGCTGACATTGTCAACTCTGTTGTGTTACAGGATGACTTCTTGCCAAGGACAGCTACGCCTCTGGAAGATATTTTCAAATCAGTATTTTGCTTGCCTTGTTTACTGTGTGGCAAATGCATGAGTGATACATGTATACCAGAAGAAAGGATGCTTGCAGATCCACGGAGATTATATGCTCCAGGACGGTTGTACCACATTGTGGAAAGAAAACTTTGCAGATGTGGAAGGTTTCCACCAGTTGTGAAAACTGCTGTTCCAGTAGAGGGAAGATTTGAGCACATCATCATTTCATGCAATGCTACATCAGACCATGGAATTATCTGGATTGAGAGGGAGTCACAAAAAGCACTAGATCTAATGATTGAGAGGGAGAGAGCCTTGGAGATACCTTCGGAACAGAAAATGCAGAGACAACAGACGCTTGCAAATGAACATGATAAAGAGTACAAGGCTGCCATTGAGAGGGCTGCGACACTGAGAATGGCCCAGGCATACTCTCCATCCTATGGTACTTTTGATACCGTCTTTGATAACAATGACAACGAACGAACTGAACTTTTCATTGAACACGGGGAAAATTTCTCTGAGAAATCTGAAATTGGGGAGCCTTCAGTAACAACTAAGAGAAAATCGAAATGGGATGAAATGATCAATAAACTTATTAAGAAAAGATAA___GACTCGTGAGTTAAAGAAGGGGGATGGATAGTTTGTAATGATTTTTCATTTCCATTTCTGCATGTTAAATGCAGGTTTGGTTCTTCAATTTATTGTTTTTTCATTCCCTGAATTGTATTATGCTTTATAAGTTATGGAGATATGAGTAAGCGCGCAGGTTGTTTTGTTGATTTCTTTATTAGTTTGCATCCAATATTGGAACTAACATAAGAAATAGAACCTAAAATGCACAGGTTGATTCAGAGATAAGTTTCAGGGCCCATGCCTATATTTCGTTTGCATTTGGATATTTATATATAGGCTTGATCATTCAAGTCAAATAGAAATTGTCACTGGACTGGTCTTACCCCTTGTTTGTCATATAAATGCCTTCGCACATCGAATGCCCCAATATAGACCTGGTGAGTCAACAGTCCGTAACCGG

Fln Alignment:

sp_v1.1_unigene407___MSLVCGIPLLECVYCLACARWAWKRCLHTGEQDSERWGYARREEFEPVPRLCRLILSVYEDDIRKPQWAPPGGYGINPEWILKKVTYEQTGGRAPPYVIYLDHENCDIVLAIRGLNMAMESDYAMLWDNKLGQKMFDGGFVHNGLLKSAAWLIDNEGDTIKELIEEYPNYTLTFTGHXXXXXXXXXXXXXXXXXRDLLGGIPRNQMRCFAFAPARCMSLNLAVRYADIVNSVVLQDDFLPRTATPLEDIFKSVFCLPCLLCGKCMSDTCIPEERMLADPRRLYAPGRLYHIVERKLCRCGRFPPVVKTAVPVEGRFEHIIISCNATSDHGIIWIERESQKALDLMIERERALEIPSEQKMQRQQTLANEHDKEYKAAIERAATLRMAQAYSPS-YGTFDTVFDNNDNERTELFIEHGENFSEKSEIGE--PSVTTKRKSKWDEMINKLIKK
F6H6L4_____________MSIVCGIPLLECVYCLACARWAWKRCLHTAGHDSETWGLSTAEEFEPVPHLCRYILAVYEEDLHHPLWEPAGGYEINPDWLILKKTYEDTQGCAPPYILYLDHKHADIVLAIRGLNLARESDYAVLLDNKLGQRKFDGGYVHNGLLKAAGWVLDAECDVLRELVEKYPNYTLTFTGHSLGSGVAALLTMVVVHNRDKLANIDRKRIRCYAIAPARCMSLNLAVRYADLINSVVLQDDFLPRTATPLEDIFKSLFCLPCLLCLRCMKDTCVPEEKMFRDPRRLYAPGRLYHIVERKPFRMGRFPPVVRTAVPVDGRFERIVLSCNATSDHAIIWIEREAQRALDLMLEKDKIMEIPAKQKMERQETLKREHSEEYKAALQRAVSLAVPHAYSPSQYGTF------SDH-------EEGENSSRSSEGSSYGSSKTSKKKESWDEVIERLFEK

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
95			75	25	0.996473
111	90			10	0.90298
112		90	10		0.90298
113	90		10		0.90298
324	88		11		0.923564
469			87	12	0.992554
470	87	12			0.992554
471	87		12		0.992554
474			12	87	0.992554
475			87	12	0.992554
477	12	87			0.992554
482	12		87		0.992554
483	87	12			0.992554
485	87		12		0.992554
488		12	87		0.992554
565	66			33	0.997452
648	66		33		0.997452
783		87	12		0.992554
785	87	12			0.992554
1050		10		90	0.90298
1108			88	11	0.923564
1133		10	90		0.90298
1135			90	10	0.90298
1136	90	10			0.90298
1139		88	11		0.923564
1143	77			11	0.968132
1144	88		11		0.923564
1145	88		11		0.923564
1146	87	12			0.992554
1147	87			12	0.992554
1154		12	87		0.992554
1167	88	11			0.923564
1169	88			11	0.923564
1171			88	11	0.923564
1174		11	88		0.923564
1175	88	11			0.923564
1176			88	11	0.923564
1177	88			11	0.923564
1179		88	11		0.923564
1183	11		88		0.923564
1184		11	88		0.923564
1185	88			11	0.923564
1186		11	88		0.923564
1239	88		11		0.923564
1330		12		87	0.992554
1332	87	12			0.992554
1333	12			87	0.992554
1334	87		12		0.992554
1335	87			12	0.992554
1336		87	12		0.992554
1338	87		12		0.992554
1366			12	87	0.992554
1367			87	12	0.992554
1368	87	12			0.992554
1371	85			14	0.993533
1374	14		85		0.993533
1527			11	88	0.923564
1528	11			88	0.923564
1531	88			11	0.923564
1533			11	88	0.923564
1534			11	88	0.923564
1541		11	88		0.923564
1543		12		87	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain