SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene404

Length: 814 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene404 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protease U48 caax prenyl protease rce1, putative; K08658 prenyl protein peptidase [EC:3.4.22.-]	-	-	4.0e-33	43%
FL-Next	sp=CAAX prenyl protease 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	43%
Blast2go	farnesylated protein-converting enzyme 2	-	-	1.89629e-37	62%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	4.0e-33	43%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein maturation by peptide bond cleavage	GO:0051605	Biological Process	1.89629e-37	62%
Blast2go	CAAX-box protein maturation	GO:0080120	Biological Process	1.89629e-37	62%
Blast2go	cellular protein localization	GO:0034613	Biological Process	1.89629e-37	62%
Blast2go	endopeptidase activity	GO:0004175	Molecular Function	1.89629e-37	62%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	1.89629e-37	62%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
270	87		12		0.992554
358	10		90		0.90298
359		10	90		0.90298
360		10	90		0.90298
611			50	50	1.0
640	14	85			0.993533
643			14	85	0.993533
647	11			88	0.923564
650		11		88	0.923564
651		11	88		0.923564
653	11			88	0.923564
654			11	88	0.923564
658	11			88	0.923564
668			87	12	0.992554
731	28	71			1.0
733		28	71		1.0
743	71	14			0.984337
744	71	28			1.0
746	71	28			1.0
792	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain