SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene403

Length: 1353 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene403

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	hydroxyacylglutathione hydrolase (EC:3.1.2.6); K01069 hydroxyacylglutathione hydrolase [EC:3.1.2.6]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	glyoxalase ii	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydroxyacylglutathione hydrolase.	EC:3.1.2.6	-	0.0	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyruvate metabolism	00620		0.0	80%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydroxyacylglutathione hydrolase.	EC:3.1.2.6	-	0.0	70%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Pyruvate metabolism	00620		0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	iron ion binding	GO:0005506	Molecular Function	80%
Blast2go	hydroxyacylglutathione hydrolase activity	GO:0004416	Molecular Function	80%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT10

Fln msg:

Fln protein: MASSLQIELVPCLKDNYAYLLHDSSSGTTGIVDPSEPGPIRDILSKRRYKLTYILNTHHHYDHTGGNLELKATYGAKVIGPLGEKDRIPGIDIALRDGEKWMFGGHEMHVLETPGHTKGHVSFYFPESGVIFTGDTLFSLSCGKLFEGSAEQMWSSLSKIASLSDHVRIFCGHEYTVSNAKFALSIEPGNDALRSYAARASELRSKGLPTVPSTLAEEKSCNPFLRPFSAEIRKSLNIPDTASEAEVLGRVRKAKDMF*

Protein Length: 260

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTTTCTGTTCAGTTGGAGGAGATCAATTGAATGCTAGCATCTCTACC_-_ATGGCCTCTTCCTTACAAATTGAGCTGGTTCCATGCCTAAAAGACAACTATGCATATCTATTGCATGATTCAAGCTCTGGTACTACAGGGATAGTGGATCCTTCTGAGCCTGGACCAATAAGAGATATCTTAAGTAAGAGAAGGTACAAGCTGACGTATATTCTGAACACTCATCATCACTATGATCATACTGGCGGGAACTTGGAATTGAAAGCCACATATGGTGCCAAGGTAATTGGACCTCTTGGTGAGAAAGACCGAATTCCTGGCATTGATATTGCTTTGCGCGATGGCGAAAAATGGATGTTTGGAGGTCATGAAATGCATGTGCTGGAGACCCCTGGGCATACAAAAGGTCATGTTAGCTTCTATTTTCCAGAATCAGGGGTAATATTCACTGGAGACACACTTTTTAGCTTATCTTGTGGCAAACTTTTTGAAGGATCTGCTGAGCAGATGTGGTCTTCACTCTCGAAAATTGCGTCATTGTCAGATCATGTGCGTATCTTTTGTGGCCATGAATATACTGTGAGCAATGCAAAATTTGCATTGTCCATAGAGCCAGGCAATGATGCACTTCGTTCTTACGCAGCACGTGCATCTGAACTTCGCAGCAAAGGCTTACCAACGGTACCATCAACCCTAGCAGAGGAAAAATCATGTAATCCATTTCTGCGCCCTTTCAGTGCTGAAATTAGGAAGTCTTTAAATATTCCAGACACTGCAAGCGAGGCAGAAGTCTTAGGCAGAGTTCGAAAGGCAAAGGATATGTTTTGA___AAAATCAAATCCATTGCTATTGTCAGGATTATTTAGAACAAGTTCCAAGCAAGTATGGCTGATGTTGATGATAAAAGAAGAGTATGGCCCAGGGCCAAATATATTTTTCTTCTTACTGTTAGAGATGAAACGAGTGGAAATGAGGTATCCACATTTTGTCTCGGACAATAATTGGGTTTGAGTTTATCACAGCAATATTTTTGAAGGTAATATCATAACTGGTTGCTAACAGTGTGCATACTTGTTCCAATATTGTCTTAGCACAGGAGAGCTTGTAATTACCACCCACAATTTAATTTTCAGGAGTGTGAAGAGACAAGATTATGTGGTCTCACATGTTGATTCTATATTTTTTGATACTGTACAGAAAATCGGAAGAATATTTTCTGTTCAACAACGTCTCTATAATCTAGTGATAGTGTACTGTTTAATATTCAGTACATTACATCGGAAACATTAATTATGCAAGGTGGAATGCATGCAAATAAAAATGTAAAAACGT

Fln Alignment:

sp_v1.1_unigene403___LQIELVPCLKDNYAYLLHDSSSGTTGIVDPSEPGPIRDILSKRRYKLTYILNTHHHYDHTGGNLELKATY-GAKVIGPLGEKDRIPGIDIALRDGEKWMFGGH-EMHVLETPGHTKGHVSFYFPESG----VIFTGDTLFSLSCGKLFEGSAEQMWSSLSKI-ASLSDHVRIFCGHEYTVSNAKFALSIEPGNDALRSYAARASELRSKGLPTVPSTLAEEKSCNPFLRPFSAEIRKSLNIPDTASEAEVLGRVRKAKD
A9NT10_____________MKIVPVPCLEDNYAYLIIDEDTGEAAVVDPVEPQNILQAAEVHGANIKFVLTTHHHWDHAGGNEELKKLVPGIEVYG--GAKDHVKGCTVALEHGDELSLGRTVTIKALHTPCHTKGHISYFLTSTSGDDPAVFTGDTLFIAGCGKFFEGSAEQMYQSLCKILASLPRSTQVFCGHEYTVKNLRFAMTVEPENERIKQKLNWAEQQRRENKPTVPSTIQDELESNPFMRVDRLELKE---LVGHNSPVHVLGEIRQMKD

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
727	88		11		0.923564
729	88	11			0.923564
730	88	11			0.923564
731	88			11	0.923564
734		88	11		0.923564
735	88	11			0.923564
739	88	11			0.923564
741		11		88	0.923564
742		88		11	0.923564
753		55		44	1.0
796	90	10			0.90298
797		90		10	0.90298
799			90	10	0.90298
801	88			11	0.923564
802	88			11	0.923564
803			87	12	0.992554
807		12	87		0.992554
808			87	12	0.992554
831	33		66		1.0
837	90		10		0.90298
838	90			10	0.90298
839	90	10			0.90298
843		10		90	0.90298
844	90	10			0.90298
846			90	10	0.90298
847			10	90	0.90298
848			10	90	0.90298
849		40		60	1.0
850		10		90	0.90298
852	90			10	0.90298
853	90	10			0.90298
855	90	10			0.90298
913	10		90		0.90298
928	90			10	0.90298
930	88		11		0.923564
931	77		11		0.968132
952	28			71	1.0
1050	81			18	0.999994
1154		66		33	1.0
1161	28		71		1.0
1188	28	71			1.0
1254		83		16	0.994512
1256	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain