SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene400

Length: 3242 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene400
ATGGGGAATCCTTTCTTTACATTCTCACTTTTGGAGTTTCCTTAGAAGCTTAGACAGCAATTAAATTCTTATATATAAAGAGCGTCGCGTCCGTAATCTCTTTACAACATTCTCGGTTCTGGCTTTCATGGGGGTTCACAGCAAACATCGACTGTATCTGTGAAATTCTTTTTCGTTCTTCATATTATATTTATTCAGCGTTGGAGCTCCAGCCCTGTCGACGGCCAAGCGCAAATAACACAATTGCTAAGTTTGCAGCGACTACATTTTTCTGGTTCGTAATAAGAGGGAAACGGGACTCCGAAGGAGCTTCGAATGGTGTATTTTAAGTGATTTTTGACCGGAATTGGGGTTGGGGACAGCAATTAAACCCCAAGAAAGCCAGTTCGAAAAGCTATGGATTACGGCCAGTCGGACAGCAGCGGAACAGATGATGACCTTCCCCATCTCATCAGACTCGAATAGCTAGAGGAGCTGGCCGGATTTCTGGAAATGGGAGGTCTTCTGCAGGACCAGGGCCTTATGCTAGAATGCAGAATGAGATGGAGCGTCAGATTCATTGGCTTGAGCAAGAAGCGTACAGCTCTGTTCTTCGGGCCTTCAAGGCACAATCTGATGCGATTACATGGGCTAAAGAGGGTTTGATGTCTGAGTTGAGAAAAGAACTTAGAGTTTCTGATGAGGAGCACAGGGAACTCTTGAGCAGAGTTAATGCAGATGATCTATTGAAACGGATAAGAGAATGGAGACAGGGGGGAGGTAACCAAGGTGGATTAATTAGCACTGCAGCACCTGACCATGATCCAACCCCCAGTCCAACAGTTTCAGCTTCACGAAAGAAGCAAAAAACAGCACACATATTGCCTGCTTTACCTATGCCATCACAATCAGCATTACATCCCTTGTCTGTTGCTGCACCATCACAACCCTCCTCATCTGCAGCAAAAAGAGGAACGCCTGTTGGACCTAAGAGCAAGAAACCTAAAACAAATCAGACAATGGCAGTAGTGTCACCCCCAGTTAAGGCCCAACAGTTTCAGCCTGCTGCCCCTGTGGCAGGAAGGGCACAAATTGCAAATAGAGGACCACCAGGGCCTTCAGGTTTGAGTGAACCTCCCGAGGCAGCAACTGTTGATCCTTTGATAGGTCGAAAAGTAAGGACAAGGTGGCCAGAGGACAATAACTTCTATGAGGCTATTATAACAGATTATAATCCACAGCAGGGACTGCATGCCCTGGTTTATGATATGAACACCAACAGGGAAACTTGGGAATGGGTTAATCTGAAAGAGATAACTCCAGGGGACATTATGTGGGACTGGGAGGGTCCTGCAGGATCTGGTCGAGGTAGCCGTGTTGCTGTTGGACGTGGGATTAAAAAATCAGGTGGTCGCGGAGGCCTGGTTTCTTCTTCTGGTAGGGGAAGAGGTATTTCGAAGGGTCAAGCTAGAAAGGATTTTCCACCTTCTCAAAATGGGATAGGCAAGAAGGTACCAGGCGATATCGAGATACTCCATACTGACACTCTTTTGAGGGAGGTGGAAAGGATTTTTGGTGGACCGCAACCTGATCCTGCAGATATGGAGAAAGCTAAGAAATTGCTGAAAGAGCATGAGCAATCACTCGTGGATGCAATTGCAAGACTTGCTGAGGCATCTGATGGGGAAAGTGAAGATGGGCGGCAACCCCTTCCATCCCACACACACTCCATTGACCGTGAAAGAGGATGGAGAAACATGCAGTATAATGGAAACCAGCATACTGCTGATGATGAAGATGATACAGCTGGAGATGGTAGAGCTGAAGGTTCAGATGGGGAACCTATGATTGGGGAAGGTGGTGTTGCATCTGATGACCAACAGGATGGAGACGATGGGGATGAAGACATTTGATTTTTCAGATCATTGATCAAGACTTTGTTGCCCTCGTGTAAAACTTGCGGTGGGCTGTGCTGTAGATGATGTATGAGTACTCTCAGACAATGCATTGGAAGCTTCCTTATTGGTAGCCTTCCCTGTGTTGTAAAAAAATCTTGACATCTTAGAAAGGGGTGCCTTTGACAGCTATTCTCATATTGATTTAATTTTTCATTAATCCTTTGTATACAGTTCTTGGGGCAGGTATCCTCGAGCGATTTTACAAAATTCCTAGATAGAGAAAATGAATCAAAGTACCCCATTGTAGTCAGCACCTGATCAACAATTCAAGTGCCGGAGCTACTTACACTATTGTCCTGCTCAAGTAGTAAACTAAAGGATTTGTACTCTAGTGACCCCAAGTGATATTCACAATTTGTTGTTTATGAATGTGAGCTGGGCTTGCTACTGCTGTACTTTGGCACAAGTTCCAGAAATATTCGGGTGACAATGGACTTGCCTATCAACCTGAATGCTAGCGGTAAACCCACTGCTATATATCTGGCTTTCTACCTCGCAGGCATTCAGATAACTAAGGACTTGAGTAGCAACTTTGAAACGTGTACTATACAGACTCTATACTGCAATCCCAGTTGCAGTTTCTGCCAGTTATTGTAGGTCAAAGCATATATGAAGATTAGCTTCCCTCCTCTGAATTACAAGTCAGCAAAGAGAAGGGTGTGAATCACAGGTTCACGTTCTTTTTTGAGTGCGAATTGAGTGCTAACCTCTAAATTTGAATAACATCCCGTGCATCATATGTATAGGTTGCCTGGAAAGAGTTCTGTATTATGCCTTTTCTTTTAATCTGAACTAAAATCTCTCCAGCTTCTAAAACTGAAGAATGCCATTAAGCAATATTGAAAAGTTAGCACAATATATTTCTCTGATGACAGTGGCCTGGCGTAATAGACGAACATGTTGCTTCCATTATCATGTTCACTGTTAGCATTGTCTGTAAATTGTTTTACTATCCGCAAATCTACGTGGATGTATTGGACGGACTATGGATGTTCTTATCATTGTATTTATATCTGAGAGTTTGCACTTTGTTATTTAGTTGTTTTATTCTGCACTCTACTTTCATCTCTTTGGCCCCCAAAAGGTGCACTGCCTGAAGGATTCTAGAATTATGCACGAACAAATTACTAGAGAATCGCAGCAATTTTATGCTAGGAGTAATGTGTCTGGTTGTTGAATTTAGAGCATGATGAGCTGCTGTCAGATTTGTTCCTTTATTCTGGCCACAAATCTGGTCGCTGATACCTTATTGTGAAGGTGGTGATGCATATGGTTGTAATGCAAATTCAAAGCAATGGTTGTCAA

Ace file of the UniGene sp_v1.1_unigene400

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ENT domain containing protein	-	-	2.0e-31	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	protein	-	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA46

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: PSPSHQTRIARGAGRISGNGRSSAGPGPYARMQNEMERQIHWLEQEAYSSVLRAFKAQSDAITWAKEGLMSELRKELRVSDEEHRELLSRVNADDLLKRIREWRQGGGNQGGLISTAAPDHDPTPSPTVSASRKKQKTAHILPALPMPSQSALHPLSVAAPSQPSSSAAKRGTPVGPKSKKPKTNQTMAVVSPPVKAQQFQPAAPVAGRAQIANRGPPGPSGLSEPPEAATVDPLIGRKVRTRWPEDNNFYEAIITDYNPQQGLHALVYDMNTNRETWEWVNLKEITPGDIMWDWEGPAGSGRGSRVAVGRGIKKSGGRGGLVSSSGRGRGISKGQARKDFPPSQNGIGKKVPGDIEILHTDTLLREVERIFGGPQPDPADMEKAKKLLKEHEQSLVDAIARLAEASDGESEDGRQPLPSHTHSIDRERGWRNMQYNGNQHTADDEDDTAGDGRAEGSDGEPMIGEGGVASDDQQDGDDGDEDI*

Protein Length: 486

Fln nts: ATGGGGAATCCTTTCTTTACATTCTCACTTTTGGAGTTTCCTTAGAAGCTTAGACAGCAATTAAATTCTTATATATAAAGAGCGTCGCGTCCGTAATCTCTTTACAACATTCTCGGTTCTGGCTTTCATGGGGGTTCACAGCAAACATCGACTGTATCTGTGAAATTCTTTTTCGTTCTTCATATTATATTTATTCAGCGTTGGAGCTCCAGCCCTGTCGACGGCCAAGCGCAAATAACACAATTGCTAAGTTTGCAGCGACTACATTTTTCTGGTTCGTAATAAGAGGGAAACGGGACTCCGAAGGAGCTTCGAATGGTGTATTTTAAGTGATTTTTGACCGGAATTGGGGTTGGGGACAGCAATTAAACCCCAAGAAAGCCAGTTCGAAAAGCTATGGATTACGGCCAGTCGGACAGCAGCGGAACAGATG_-_ATGACCTTCCCCATCTCATCAGACTCGAATAGCTAGAGGAGCTGGCCGGATTTCTGGAAATGGGAGGTCTTCTGCAGGACCAGGGCCTTATGCTAGAATGCAGAATGAGATGGAGCGTCAGATTCATTGGCTTGAGCAAGAAGCGTACAGCTCTGTTCTTCGGGCCTTCAAGGCACAATCTGATGCGATTACATGGGCTAAAGAGGGTTTGATGTCTGAGTTGAGAAAAGAACTTAGAGTTTCTGATGAGGAGCACAGGGAACTCTTGAGCAGAGTTAATGCAGATGATCTATTGAAACGGATAAGAGAATGGAGACAGGGGGGAGGTAACCAAGGTGGATTAATTAGCACTGCAGCACCTGACCATGATCCAACCCCCAGTCCAACAGTTTCAGCTTCACGAAAGAAGCAAAAAACAGCACACATATTGCCTGCTTTACCTATGCCATCACAATCAGCATTACATCCCTTGTCTGTTGCTGCACCATCACAACCCTCCTCATCTGCAGCAAAAAGAGGAACGCCTGTTGGACCTAAGAGCAAGAAACCTAAAACAAATCAGACAATGGCAGTAGTGTCACCCCCAGTTAAGGCCCAACAGTTTCAGCCTGCTGCCCCTGTGGCAGGAAGGGCACAAATTGCAAATAGAGGACCACCAGGGCCTTCAGGTTTGAGTGAACCTCCCGAGGCAGCAACTGTTGATCCTTTGATAGGTCGAAAAGTAAGGACAAGGTGGCCAGAGGACAATAACTTCTATGAGGCTATTATAACAGATTATAATCCACAGCAGGGACTGCATGCCCTGGTTTATGATATGAACACCAACAGGGAAACTTGGGAATGGGTTAATCTGAAAGAGATAACTCCAGGGGACATTATGTGGGACTGGGAGGGTCCTGCAGGATCTGGTCGAGGTAGCCGTGTTGCTGTTGGACGTGGGATTAAAAAATCAGGTGGTCGCGGAGGCCTGGTTTCTTCTTCTGGTAGGGGAAGAGGTATTTCGAAGGGTCAAGCTAGAAAGGATTTTCCACCTTCTCAAAATGGGATAGGCAAGAAGGTACCAGGCGATATCGAGATACTCCATACTGACACTCTTTTGAGGGAGGTGGAAAGGATTTTTGGTGGACCGCAACCTGATCCTGCAGATATGGAGAAAGCTAAGAAATTGCTGAAAGAGCATGAGCAATCACTCGTGGATGCAATTGCAAGACTTGCTGAGGCATCTGATGGGGAAAGTGAAGATGGGCGGCAACCCCTTCCATCCCACACACACTCCATTGACCGTGAAAGAGGATGGAGAAACATGCAGTATAATGGAAACCAGCATACTGCTGATGATGAAGATGATACAGCTGGAGATGGTAGAGCTGAAGGTTCAGATGGGGAACCTATGATTGGGGAAGGTGGTGTTGCATCTGATGACCAACAGGATGGAGACGATGGGGATGAAGACATTTGATTTTTCAGATCATTGATCAAGACTTTGTTGCCCTCGTGTAAAACTTGCGGTGGGCTGTGCTGTAGATGATGTATGAGTACTCTCAGACAATGCATTGGAAGCTTCCTTATTGGTAGCCTTCCCTGTGTTGTAAAAAAATCTTGACATCTTAGAAAGGGGTGCCTTTGACAGCTATTCTCATATTGATTTAATTTTTCATTAATCCTTTGTATACAGTTCTTGGGGCAGGTATCCTCGAGCGATTTTACAAAATTCCTAGATAGAGAAAATGAATCAAAGTACCCCATTGTAGTCAGCACCTGATCAACAATTCAAGTGCCGGAGCTACTTACACTATTGTCCTGCTCAAGTAGTAAACTAAAGGATTTGTACTCTAGTGACCCCAAGTGATATTCACAATTTGTTGTTTATGAATGTGAGCTGGGCTTGCTACTGCTGTACTTTGGCACAAGTTCCAGAAATATTCGGGTGACAATGGACTTGCCTATCAACCTGAATGCTAGCGGTAAACCCACTGCTATATATCTGGCTTTCTACCTCGCAGGCATTCAGATAACTAAGGACTTGAGTAGCAACTTTGAAACGTGTACTATACAGACTCTATACTGCAATCCCAGTTGCAGTTTCTGCCAGTTATTGTAGGTCAAAGCATATATGAAGATTAGCTTCCCTCCTCTGAATTACAAGTCAGCAAAGAGAAGGGTGTGAATCACAGGTTCACGTTCTTTTTTGAGTGCGAATTGAGTGCTAACCTCTAAATTTGAATAACATCCCGTGCATCATATGTATAGGTTGCCTGGAAAGAGTTCTGTATTATGCCTTTTCTTTTAATCTGAACTAAAATCTCTCCAGCTTCTAAAACTGAAGAATGCCATTAAGCAATATTGAAAAGTTAGCACAATATATTTCTCTGATGACAGTGGCCTGGCGTAATAGACGAACATGTTGCTTCCATTATCATGTTCACTGTTAGCATTGTCTGTAAATTGTTTTACTATCCGCAAATCTACGTGGATGTATTGGACGGACTATGGATGTTCTTATCATTGTATTTATATCTGAGAGTTTGCACTTTGTTATTTAGTTGTTTTATTCTGCACTCTACTTTCATCTCTTTGGCCCCCAAAAGGTGCACTGCCTGAAGGATTCTAGAATTATGCACGAACAAATTACTAGAGAATCGCAGCAATTTTATGCTAGGAGTAATGTGTCTGGTTGTTGAATTTAGAGCATGATGAGCTGCTGTCAGATTTGTTCCTTTATTCTGGCCACAAATCTGGTCGCTGATACCTTATTGTGAAGGTGGTGATGCATATGGTTGTAATGCAAATTCAAAGCAATGGTTGTCAA

Fln Alignment:

sp_v1.1_unigene400___PSHQTRIARGAGRISGNGRSSAGPGPYARMQNEMERQIHWLEQEAYSSVLRAFKAQSDAITWAKEGLMSELRKELRVSDEEHRELLSRVNADDLLKRIREWRQGGGNQGGLISTAAPDHDPTPSPTVSASRKKQKTAHILPALPMPSQSALHPLSVXXXXXXXXXXXKRGTPVGPKSKKPKTNQTMAVVSPPVKAQQFQPAAPVAGRAQIANRXXXXXXXXXXXXXAATVDPLIGRKVRTRWPEDNNFYEAIITDYNPQQGLHALVYDMNTNRETWEWVNLKEITPGDIMWDWEGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQARKDFPPSQNGIGKKVPGDIEILHTDTLLREVERIFGGPQPDPADMEKAKKLLKEHEQSLVDAIARLAEASDGESEDGRQPLPSHTHSIDRERGWRNMQYNGNQHXXXXXXXXXXXXXXXXSDGEPMIGEGGVAS
D5AA46_____________PSHQNRIARGAGRISGNGRSSAGP-PYARMQNEMERQIHWLEQEAYSSVLRAFKAQSDAITWAKEGLMSELRKELRVSDEEHRELLGRVNADDLLKRIREWRQGGANQGGLMSTAAPDHDPTPSPSVSASRKKQKTAHILPSLPMPSQSTLHPLSVGAPSQPSSSAAKRGTPVGAKNKKPKTNQTMAVVSPPVKPQQFQPAVPVAGRVQIANRGPPGPSGLSEPPEAATVDPLIGRKVRTRWPEDNNFYEAVITDYNPQQGLHALVYDINTTRETWEWVNLKEITPGDIMWDWEGPAGSGRGSRGAVGRGIKKSSGRGGLVSTTGRGRGISKGQPRKDFAPSQNGIGKKVPGDIEILHTDTLLKEVERIFGGPQPDPADMEKAKKLLKEHEQSLVDAIARLAEASDGESEDGRHPLPSHTHSIDRERGWRNMQYNGNQHTADDEDDTAGDGRAEGSDGEPMIGEGGVAS

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
1103			90	10	0.90298
1203	20		80		0.999996
1348	12	87			0.992554
1353		87	12		0.992554
1702		85		14	0.993533
1906			28	71	1.0
1908	71			28	1.0
1914		28		71	1.0
1916		28	71		1.0
2312	11			88	0.923564
2313			88	11	0.923564
2315	88		11		0.923564
2324	22		77		0.999999
2407			86	13	0.999973
2408		13		86	0.999973
2409	86		13		0.999973
2410	86			13	0.999973
2411	80		20		1.0
2412	13	86			0.999973
2415	86			13	0.999973
2416		86		13	0.999973
2417			13	86	0.999973
2421	86		13		0.999973
2424		13		86	0.999973
2429		13	86		0.999973
2430	13		86		0.999973
2442	13		86		0.999973
2689	88		11		0.923564
2863	22		77		0.999999
2864	11			88	0.923564
2865			11	88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain