SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene393

Length: 1549 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene393 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=2 Tax=Selaginella moellendorffii RepID=D8QSP7_SELML	-	-	49%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	pectinesterase family protein	-	-	67%

Source	InterPros	Term	Type	Identity
Blast2go	Pectinesterase, catalytic	IPR000070	-	67%
Blast2go	Pectin lyase fold/virulence factor	IPR011050	-	67%
Blast2go	Pectin lyase fold	IPR012334	-	67%
Blast2go	Pectinesterase, active site	IPR018040	-	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2L6

Fln msg:

Fln protein: MQFFFCSCLSVTALVCLLQCSLNSQITVMGLGGFHQSDFVNWVHRTGSRQRRRSDGRMWQLDSKIPVSHYMVVDSSGHGNFQTVQAAVDAVPVDNPEWIYIQINEGVYREKVVIPYNKPNIMFQGSGRESSIIMWDLAADADGSTADSAAFSSFAPNFTAKGVGFWNNAPPAPPGANGKQAVAALLAGDMAAFYQCGFKGAQDTLFDYQGRHYFRNCYIEGSIDFIFGHGQSTYKGCELYAKADSRYLSGSITAQNRASPDDQGGFVFIACKITGTGQVFLGRAWGAYSRVIFAYTYMANIIVPQGWDDWGLVERHGSVVYGEYQCYGPGANNKDRVKWSQKLTTTEVQPYLDLSFIDATQWLQEY*

Protein Length: 368

Fln nts: GTATGtGATACTTCTTCGCATTGTTTATTTGTATTCTACTTCAACTGCCCAGCTTCAAATTACGAGAAATCATAACGAGTAACTAACCTACATGTTTCGTTGTGCTCTTTTCCACTATCCTCTTCTAACTAATTCTATGCTTGAACAAGAATCTTCTAACTGTTTCTATACTTGAACAAGAAAAAGGCTTGTAGCTCTGCCTCCTGCCATTTTTCTGTTTGGTCCATTTCATTCCATTCCTTCCTGTTACTGAAATTCTCCGCTATTCACATATTGAA_-_ATGCAGTTCTTCTTCTGCTCATGCCTTTCTGTGACTGCATTGGTCTGTCTATTACAATGCAGCCTCAATTCCCAGATAACTGTGATGGGGTTAGGTGGTTTTCATCAAAGCGATTTTGTGAATTGGGTACATAGGACAGGTTCAAGACAGAGACGCAGATCTGATGGCAGAATGTGGCAGTTGGATTCGAAGATACCTGTGTCCCATTACATGGTGGTTGATAGTTCGGGCCATGGGAACTTTCAGACAGTGCAGGCTGCAGTGGATGCTGTTCCTGTCGATAATCCGGAGTGGATTTATATTCAAATCAATGAAGGAGTTTACAGAGAGAAGGTAGTAATACCCTACAACAAACCAAACATCATGTTTCAGGGAAGTGGAAGAGAGTCCTCTATCATAATGTGGGACTTAGCTGCTGATGCAGATGGGAGTACTGCTGACAGTGCCGCTTTCTCATCCTTTGCCCCCAATTTCACTGCCAAGGGTGTAGGATTTTGGAATAATGCCCCTCCAGCACCGCCCGGAGCCAATGGCAAACAGGCAGTGGCTGCTCTGCTGGCAGGAGACATGGCTGCCTTCTATCAATGTGGGTTTAAAGGAGCGCAGGACACCCTCTTTGATTACCAAGGGAGACATTACTTCAGGAATTGTTACATTGAAGGCTCCATTGATTTCATCTTTGGCCATGGGCAGTCCACATATAAGGGATGTGAACTGTATGCCAAGGCTGATAGTAGATATTTGTCAGGATCCATAACTGCACAAAACCGAGCCAGCCCAGATGACCAAGGTGGTTTTGTTTTCATTGCCTGCAAAATCACTGGGACAGGACAAGTTTTCTTAGGGCGAGCATGGGGTGCTTATTCTCGCGTTATCTTCGCTTACACTTACATGGCCAACATCATCGTCCCGCAAGGATGGGATGACTGGGGTTTGGTTGAGAGGCATGGGAGCGTTGTCTATGGAGAATACCAGTGCTACGGTCCAGGTGCAAACAATAAGGACCGAGTGAAATGGTCTCAGAAACTAACAACCACAGAAGTCCAACCATATTTGGATTTAAGCTTCATAGATGCAACTCAGTGGCTTCAAGAATACTGA___ATAATGAGAAACGAGAGGTCCTCTTAGTTTTCAACTCCCGTTACAAAAAATGTACATCCACTGTTTACAGATGAAATCTGTAATTTGATGGATCTTGCTATTTTGAATGTTTTTGTTGGGTGTTACTAAATGTACCTGCAACAATATCTCTTTCGATTTTAGAATTTACT

Fln Alignment:

sp_v1.1_unigene393___LGGFHQSDFVNWVHRTGSRQRRRSDGRMWQLDSKIPV-SHYMVVDSSGHGNFQTVQAAVDAVPVDNPEWIYIQINEGVYREKVVIPYNKPNIMFQGSGRESSIIMWXXXXXXXXXXXXXXXXXXXAP------NFTAKGVGFWXXXXXXXXXXXGKQXXXXXXXXXXXAFYQCGFKGAQDTLFDYQGRHYFRNCYIEGSIDFIFGHGQSTYKGCELYAKADSRYLSGSITAQNRASPDDQGGFVFIACKITGTGQVFLGRAWGAYSRVIFAYTYMANIIVPQGWDDWG-LVERHGSVVYGEYQCYGPGANNKDRVKWSQKLTTTEVQPYLDLSFIDATQWLQE
A9P2L6_____________LGGFAQ----------GGIQGNYSTSRAWPHPWQGPIGTRQVVVDQSGHGDFLTVQAAVDSVIEGNREIVIINIHAGYYLEKVLVPATKPYITFQGAGKEFTVIEWHNRASDLDPTGQQLRTYHSASVTVLANYFSAKNISFKNTAPAPMPGMEGWQAVAFRISGDKAYFLGCGFYGAQDTLCDDEGRHYFKECYIEGSIDFIFGNGRSMYKHCELHSIAKE---FGSIAAQGREKPYEKTGFAFVHCTVTGTGPLYIGRAMGQYSRIVYAYTYFDDIVAREGWDDWGHQTTKDRTAFFGVYKCYGPGAAAAGGVSWVHELTPEEARPFLVKSYVNGKHWIQE

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
733		12		87	0.992554
734	12		87		0.992554
867		88		11	0.923564
1001		85		14	0.993533
1225		43		56	1.0
1289	57		42		1.0
1330	90	10			0.90298
1331	90	10			0.90298
1332	90	10			0.90298
1335			90	10	0.90298
1342		11	88		0.923564
1343		11	88		0.923564
1346			88	11	0.923564
1469		25		75	0.996473
1470		25		75	0.996473
1471	75	25			0.996473
1472	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain