SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene387

Length: 2636 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene387
CAAGAGATGCGGTTCCCTGACAATAGTTATATATCTTATATATTCCATTTTACATATTGATGTAGTTTTATATCCAACTTGTGGAACAATTGAATATCTGCTGTGTATTTAATTACGGGCAGAAATGATTTAATTAATTGGGAAAAAGGCAAGCTTTAGTGGGTGGCATAAAGCTCGAAACATACACATGCTGTTTGGTCACAGTCCTGCCACAGGGACATAATCTCCAGTCTCTGCATACGAATGTATATTTTCCTGTGGGCTGTAATATTGTTCATCTGGTGTTTATCTCAGTTTCTTTCCACGGTCAAATGCCATTTTCATGTTCAATTATTTTCCAGTGAAGCAAGTGGATTGAGCATGCAAAGAGTTATAGGATTAGTTCCATTATCGTTAGCGTTCCCTGTTGGTGCTCAACGCATGCTTCTGTTGGCTCTGGCTCTCCATTCACCTTTTACACTTTCTTATTTGCTAACCTTCTGCTCTAGAATTCTCTCTATTTTTGGGTCTTAAGGGCCATTTTGCTGAAGGCTGACAGTAACTGTAATACGGTTTTGTCAAGTGAGATTCCATTCTGAAATTATTGCATTGTTTAAAATATAAATTTTGATGTCCAAACGTATATTTTCTCTCGCTTCTGCGTTCGTGCAAAAGTTGGATCAGGGATCAATGACAATGGAGGATTGATTGGTCTGCGAAGATGCCTGAAAACAATATGCTGAGATCAGATTCATCATGAAGAGCCTTGTGAAATGGGCATCGGATATTGGAGATGAAGGAGCGGCAACGGTGGCAGCCTGAAGAAGATGCTTTATTACGTGCTTATGTTAAGCAATACGGGCCAAGGGAATGGAACTTAGTATCACAGCGAATGGGAAAAGCCCTGGACAGAGATGCGAAATCCTGTTTAGAGAGGTGGAAGAACTATCTTAAGCCTGGGATAAAAAAGGGTTCTTTAACAGAAGAGGAGCAATCACTTGTTATAAGTCTTCAAGCAAAATATGGTAACAAGTGGAAGAAAATTGCCGCTGAAGTGCCAGGACGGACAGCAAAGAGATTAGGTAAATGGTGGGAGGTATTCAAAGAAAAGCAGCTGAAGGAGAGGCGCAAAGAAAGGCACAATATAGACAGTGCCAACTCCAGGGAAGGAGGCAAGTATGACCATATTTTGGAAACATTTGCAGAAAAATATGTGCAAAAGAAAATTTGTCCAACCAGCTTACCACCCATTCTGATGCCCTGCCCGTCATCCTCTCCTCTCCTGACCCTCAGTGTTCCAACAGGTAGTACATATGCTGATAACATATGTCTGGCCAATGTAAAACAACACCATCTGTTTTATCAGGTCCAATTGTTTCCCAGATGGCAAACTTACCTGGATCTATGGGTTTTACTCTGCCTGTCATCAAGGGAAAAATGCCTTCGGCACGTGAAATAGAACCCCGGTTGACCTTAGAAAGCCTTGGTAGTACAAGGCCCATGTTGGAGCCCGAACTTGCTTTGCAATGCAGTTCTTCGGCGATGGATTTAGATTTGACACCAACGTATCTTGGAACTTCGTCTTCTGCTGTTGATGCAACCTCATCCCTTCCTTCATGGATGTCCAATGTACCCACTGCACAAGTGCCTTCCTCAGGTGGTTCTGATGTTAAAACTACGGTGTCTGCATTCATTTTGGAGAAAGATACTCCTTTCTCATCCAAATCAATTCATCTCAACTCATCCCCTTCTGTGAGTCTGTCTCTTTCTCCATCATCAAGTGATCCAGTTGTGTCTAGTGGCTCTGCATCACCTGCCTCTGAAGTTATAGCACCTAGGTCTTGGCTGCAGGATACTATGAGGCATCACGAGATTATCAATGGGGTTGCTGGGGGAGTTGCCAAAGAGAAAAAGGTAAATTTTCCATGGTGTGCATTGGAAAAGCAAGTAGGGACATCATCTTTTGATCCAAATTTGTCTTCTAACAAACAAGCAATGGATAGTCTAATCATGCAGCAACTGCCTACCTTCCTCCAATATTGCAAAGATCTAGAAGAGGGTAGACAGTCATGGTTTATGCACAAGAAGGAAGCTACCTGGAGGCTCAGTCGGCTTGAGCAGCAGCTTGAATCTGAGAAAGCTCGCAAGCGGAGAGAAAAAATTGAAGAGGTAGGTTCAAAAATACGTGCCCTCAGGGAGGAAGAAATAACATATCTTGACAAACTGGAAACTGAGTGCAGGGAGCAGCTTTCTAGTCTCCAAAGGGATGCAGAAATGAAGGAGGCTAAGATGATGGAATTGTGGGCTACCAAACATCTGCAGTTGACAAAATTCGTTGAACAGATGCTTTATCAGTTTCCTGATGCTCAGAGACTCTTCAGCAAGGAAATGCATTGAAAAGTACCTCTTTAGCAAGGAAATGCATTGAAAAATACCTCTTTAGCAAGGAAATGCATTGACAAATGCCCCGAATTTATATAGATTTAAATGGCTTCATTCTTGCCTAGTTATACTGCTGGCTTTCACGCATTTTATTTAACAAGTTTGGATATACTGCAGAAAAAGCAGCTTTCTGTGAAGACTATTGTATAGCCTGCGTCCTGTCTCATAAATTGCTTTAATTTCTATTATTTTAGTCCCATCTTTTTCCCTGTTCT

Ace file of the UniGene sp_v1.1_unigene387 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[KAD] COG5147 Myb superfamily proteins, including transcription factors and mRNA splicing factors	-	-	1.0e-16	39%
FL-Next	sp=Protein rough sheath 2; Zea mays (Maize).	-	-	0.0	76%
Blast2go	asymmetric leaves1 and rough	-	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9S7B2

Fln msg: Separated hits, possible frame ERROR between 1204 and 1993, your sequence is longer than subject: 535 - 370

Fln protein: MKERQRWQPEEDALLRAYVKQYGPREWNLVSQRMGKALDRDAKSCLERWKNYLKPGIKKGSLTEEEQSLVISLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQLKERRKERHNIDSANSREGGKYDHILETFAEKYVQKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQQLPTFLQYCKDLEEGRQSWFMHKKEATWRLSRLEQQLESEKARKRREKIEEVGSKIRALREEEITYLDKLETECREQLSSLQRDAEMKEAKMMELWATKHLQLTKFVEQMLYQFPDAQRLFSKEMH*

Protein Length: 536

Fln nts: CAAGAGATGCGGTTCCCTGACAATAGTTATATATCTTATATATTCCATTTTACATATTGATGTAGTTTTATATCCAACTTGTGGAACAATTGAATATCTGCTGTGTATTTAATTACGGGCAGAAATGATTTAATTAATTGGGAAAAAGGCAAGCTTTAGTGGGTGGCATAAAGCTCGAAACATACACATGCTGTTTGGTCACAGTCCTGCCACAGGGACATAATCTCCAGTCTCTGCATACGAATGTATATTTTCCTGTGGGCTGTAATATTGTTCATCTGGTGTTTATCTCAGTTTCTTTCCACGGTCAAATGCCATTTTCATGTTCAATTATTTTCCAGTGAAGCAAGTGGATTGAGCATGCAAAGAGTTATAGGATTAGTTCCATTATCGTTAGCGTTCCCTGTTGGTGCTCAACGCATGCTTCTGTTGGCTCTGGCTCTCCATTCACCTTTTACACTTTCTTATTTGCTAACCTTCTGCTCTAGAATTCTCTCTATTTTTGGGTCTTAAGGGCCATTTTGCTGAAGGCTGACAGTAACTGTAATACGGTTTTGTCAAGTGAGATTCCATTCTGAAATTATTGCATTGTTTAAAATATAAATTTTGATGTCCAAACGTATATTTTCTCTCGCTTCTGCGTTCGTGCAAAAGTTGGATCAGGGATCAATGACAATGGAGGATTGATTGGTCTGCGAAGATGCCTGAAAACAATATGCTGAGATCAGATTCATCATGAAGAGCCTTGTGAAATGGGCATCGGATATTGGAG_-_ATGAAGGAGCGGCAACGGTGGCAGCCTGAAGAAGATGCTTTATTACGTGCTTATGTTAAGCAATACGGGCCAAGGGAATGGAACTTAGTATCACAGCGAATGGGAAAAGCCCTGGACAGAGATGCGAAATCCTGTTTAGAGAGGTGGAAGAACTATCTTAAGCCTGGGATAAAAAAGGGTTCTTTAACAGAAGAGGAGCAATCACTTGTTATAAGTCTTCAAGCAAAATATGGTAACAAGTGGAAGAAAATTGCCGCTGAAGTGCCAGGACGGACAGCAAAGAGATTAGGTAAATGGTGGGAGGTATTCAAAGAAAAGCAGCTGAAGGAGAGGCGCAAAGAAAGGCACAATATAGACAGTGCCAACTCCAGGGAAGGAGGCAAGTATGACCATATTTTGGAAACATTTGCAGAAAAATATGTGCAAAAGAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGCAACTGCCTACCTTCCTCCAATATTGCAAAGATCTAGAAGAGGGTAGACAGTCATGGTTTATGCACAAGAAGGAAGCTACCTGGAGGCTCAGTCGGCTTGAGCAGCAGCTTGAATCTGAGAAAGCTCGCAAGCGGAGAGAAAAAATTGAAGAGGTAGGTTCAAAAATACGTGCCCTCAGGGAGGAAGAAATAACATATCTTGACAAACTGGAAACTGAGTGCAGGGAGCAGCTTTCTAGTCTCCAAAGGGATGCAGAAATGAAGGAGGCTAAGATGATGGAATTGTGGGCTACCAAACATCTGCAGTTGACAAAATTCGTTGAACAGATGCTTTATCAGTTTCCTGATGCTCAGAGACTCTTCAGCAAGGAAATGCATTGA___AAAGTACCTCTTTAGCAAGGAAATGCATTGAAAAATACCTCTTTAGCAAGGAAATGCATTGACAAATGCCCCGAATTTATATAGATTTAAATGGCTTCATTCTTGCCTAGTTATACTGCTGGCTTTCACGCATTTTATTTAACAAGTTTGGATATACTGCAGAAAAAGCAGCTTTCTGTGAAGACTATTGTATAGCCTGCGTCCTGTCTCATAAATTGCTTTAATTTCTATTATTTTAGTCCCATCTTTTTCCCTGTTCT

Fln Alignment:

sp_v1.1_unigene387___MKERQRWQPEEDALLRAYVKQYGPREWNLVSQRMGKALDRDAKSCLERWKNYLKPGIKKGSLTEEEQSLVISLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFXXXXXXXXXXXRHNIDSANSREGGKYDHILETFAEKYVQKKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQQLPTFLQYCKDLEEGRQSWFMHKKEATWRLSRLEQQLXXXXXXXXXXXXXEVGSKIRALREEEITYLDKLETECREQLSSLQRDAEMKEAKMMELWATKHLQLTKFVEQM
Q9S7B2_____________MKERQRWRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELRDSRRPPPEPSPDERGRYEWLLENFAEKLVGERxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQALAELAECCRELEEGRRAWAAHRREAAWRLKRVEQQLEMEREMRRREVWEEFEAKMRTMRLEQAAAAERVERDHREKVAELRRDAQVKEEKMAEQWAAKHARVAKFVEQM

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
758	25		75		0.996473
770		33	66		0.997452
773	66			33	0.997452
994		20		80	0.995493
997			80	20	0.995493
1529		75		25	0.996473
1680		20		80	0.995493
1681		20	80		0.995493
1682	20			80	0.995493
1739	80		20		0.995493
2269	66	33			0.997452
2270		33		66	0.997452
2271	66	33			0.997452
2272	66	33			0.997452
2273	33	66			0.997452
2449	66	33			1.0
2450	66	33			1.0
2453			66	33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain