SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene385

Length: 1771 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene385

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative arogenate dehydratase n=1 Tax=Capsicum annuum RepID=B5LAT0_CAPAN	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	arogenate prephenate dehydratase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Arogenate dehydratase.	EC:4.2.1.91	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	82%
Blast2go	Biosynthesis of phenylpropanoids	01061	82%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	82%
Blast2go	Biosynthesis of plant hormones	01070	82%
Blast2go	Metabolic pathways	01100	82%
Blast2go	Biosynthesis of secondary metabolites	01110	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	arogenate dehydratase activity	GO:0047769	Molecular Function	0.0	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Prephenate dehydratase	IPR001086	-	0.0	82%
Blast2go	Prephenate dehydratase, conserved site	IPR018528	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLZ1

Fln msg:

Fln protein: MALKISFSADAFQSGAVLGHGRNESGPSSSSKQALAIFYRPCNSLNRRRARLIHICRSHLERKRDCNNPAEPNGHANHSFLAAGRGSDWQASCAILAGQALENGNNNGVGIVPVKSAENSSDANTILAPLPKPLSITDLAPAPMHGSHLRVAYQGVPGAYSEAAATKAYPSCEPIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHSLHIVGEVQFPVHHCLLALPGVKPENLRRVISHPQALAQCENTLTLMGLNVAREAFDDTAGAAEFVAANNLRETASIASARAAEIYGMNILADGIQDDVGNVTRFVMLAREPVIPRTDRPFKTSIVFAHEEGTGVLFKVLSAFAFRNINLTKIESRPQRSKPVRVVDDLNGGTAKHFFEYIFYVDFEASMANPRAQNALAEVQEFTTFLRVLGSYPMDIAPLKRANSCSNHH*

Protein Length: 451

Fln nts: AAGCAAGTGGTATCAACGCAGAGTACATGGGGGGACGAACGAGTGTGTGATGTGCCCAAACACATACTCGCGTCCCAGATCTGAACACTCTGAGCCCTCGGCCCAAATTTTCAGGGGGCTAAAGTAAGCCTCAAATTCCAGAAAA_-_ATGGCTCTGAAAATCAGCTTTTCAGCCGATGCATTCCAGTCCGGCGCCGTGTTGGGTCATGGCCGCAATGAATCTGGGCCTAGCAGCAGCAGCAAGCAAGCATTGGCCATTTTTTACAGGCCCTGCAATTCTCTGAATCGGCGGCGGGCGAGACTCATCCATATCTGTAGAAGTCACCTAGAGCGGAAGCGTGACTGCAATAATCCTGCAGAGCCCAACGGGCATGCCAATCATTCGTTTCTTGCGGCCGGGCGGGGATCAGATTGGCAGGCCTCCTGCGCTATTTTAGCGGGGCAAGCATTAGAGAACGGGAACAACAATGGTGTGGGGATAGTCCCCGTGAAATCTGCTGAAAATTCCTCCGATGCAAATACCATTCTCGCCCCATTGCCCAAGCCTCTGAGCATCACAGATCTGGCCCCTGCTCCAATGCACGGATCCCATCTCCGCGTTGCCTACCAGGGAGTCCCGGGGGCTTACAGCGAGGCAGCCGCGACGAAAGCTTACCCTTCCTGCGAGCCCATACCCTGTGACCAGTTCGAGGTAGCTTTTCAAGCCGTGGAGCTTTGGATTGCAGACAGAGCAGTCCTGCCAGTGGAAAATTCCTTGGGCGGCAGCATACACAGAAACTATGATCTGTTGCTTCGCCATTCGCTGCACATTGTGGGTGAAGTTCAGTTCCCTGTACACCACTGCCTGCTCGCCCTTCCCGGCGTGAAGCCCGAAAATCTCAGACGAGTCATAAGCCATCCCCAAGCTCTGGCCCAGTGCGAGAACACTCTGACTCTCATGGGCCTCAATGTTGCCAGAGAAGCTTTCGACGATACTGCTGGCGCCGCCGAGTTCGTGGCGGCGAACAATCTCAGAGAGACCGCATCCATTGCCAGTGCCCGGGCCGCGGAAATCTACGGCATGAATATCCTCGCAGATGGCATTCAAGACGATGTGGGGAACGTTACCAGATTCGTCATGCTCGCCCGGGAGCCTGTGATTCCGAGAACCGACCGCCCCTTCAAGACCAGTATTGTGTTCGCCCACGAGGAAGGGACCGGTGTCCTCTTCAAGGTACTCTCGGCTTTCGCTTTCAGGAATATCAATCTGACCAAGATCGAGAGCAGGCCACAGAGGAGCAAACCCGTCCGGGTCGTTGATGATCTCAATGGGGGCACTGCGAAACACTTCTTTGAGTACATTTTCTACGTTGATTTCGAAGCCTCCATGGCCAATCCCCGCGCGCAGAATGCCCTGGCAGAGGTTCAGGAATTCACCACTTTTCTCAGAGTTCTGGGTAGTTATCCCATGGATATCGCTCCTCTTAAGCGTGCTAATTCTTGTTCCAACCATCATTAG___ATTGCCTTATTTTGTTGTTATTTTTGGGTGTGCGCGACTATACTTCATGTACCAAGCTTCGGCCCCATCGGCCTGATAAGTTGCTACTGTAATGTTTGAAAATGGAAGTAAATAAATATGTATTTATAACATATATCATTATGTACAGATCAAACAAGAATGTTGTAAATCTCTCCAGAGATATTGAAGATCGTGGCTTGATCGCGTTTAACTAATATCTCGATACTGTGTGGCAAAGGCTTCTTATACGCTTATCATATTTTGACAGTATTGACT

Fln Alignment:

sp_v1.1_unigene385___SDWQASCAILAGQALEXXXXXXXXXXXXKSAENSSDANTILAP-----LPKPLSITDLAPAPMHGSHLRVAYQGVPGAYSEAAATKAYPSCEPIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHSLHIVGEVQFPVHHCLLALPGVKPENLRRVISHPQALAQCENTLTLMGLNVAREAFDDTAGAAEFVAANNLRETASIASARAAEIYGMNILADGIQDDVGNVTRFVMLAREPVIPRTDRPFKTSIVFAHEEGTGVLFKVLSAFAFRNINLTKIESRPQRSKPVRVVDDLNG-GTAKHFFEYIFYVDFEASMANPRAQNALAEVQEFTTFLRVLGSYPMDIAPLKRANSCSN
B8LLZ1_____________TQWQTSCAILSSNVVSQQQETEKSADHGLVAVNGHAKSESMIPRDLDNLPRPLSLIDLSPPPMHGSPLRVAYQGVPGAYSEAAAKKAYPNSEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLNRVISHPQALSQCELTLTKLGLNVAREAFDDTAGAAEFIALNNLRDTAAIASSRAAELYGMTVLADGIQDDSNNVTRFVMLAREPIIPRTDRPFKTSIVFAQDKGTSVLFKVLSAFAFRNISLTKIESRPHRNQPLRVVDDGNVIGTAKH-FEYMFYVDFEASMADPRAQNALSEVQEFTSFLRVLGSYPMDMTPLNNNSSSSS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
620		16	83		0.994512
631			85	14	0.993533
634	85		14		0.993533
635	14		85		0.993533
1015		10	90		0.90298
1030		88		11	0.923564
1092			11	88	0.923564
1127			88	11	0.923564
1350	90			9	0.999842
1544			90	10	0.90298
1581	70	30			1.0
1692		60	40		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
227	239	AGC AGC AGC AGC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain