SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene382

Length: 1503 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene382 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UBC23; UBC23 (UBIQUITIN-CONJUGATING ENZYME 23); small conjugating protein ligase/ ubiquitin-protein ligase; K10581 ubiquitin-conjugating enzyme E2 O [EC:6.3.2.19]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	51%

Source	GOs	Term	Type	Identity
Blast2go	phosphate ion homeostasis	GO:0055062	Biological Process	73%
Blast2go	phosphate ion transport	GO:0006817	Biological Process	73%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2M6

Fln msg: your sequence is longer than subject: 414 - 108

Fln protein: MLPDASNLSNHGERAQKRILDRTDLDIFKEKEFMRGSQYHLLESMDALYPIDDSAMQEGKEEAELCTPKDKSKYSVCRVDDRVQCFKKCVDDSGECTFNTVKKQKKEDPLSDLAASDNDESGYLKHLDTVKDPMDHFFLNKTSQSTGQHQWTKKVHQEWAILEKNLPDAIYVRVYEDRIDLLRAVIIGAAGTPYQDGLFFFDIHLPSEYPRTPPSVHYHSGGLRLNPNLYENGKICLSLLNTWTGRGNEIWDPLNSSILQVLVSLQGLVLNSKPYFNEAGYEKQIGRAEGEKNSLAYNENSFLLSCKSMLYLLRKPPKHFESFVREHFRQRGHYILAACNAYMMGAKVGCLSGETMMGVHDRADTQSTSSIGFKIMLAKLIPKLVSAFKEVGADCEEFLNVSEHFGLVQKATI*

Protein Length: 415

Fln nts: ATGGGGGTTTGCTTGGGTTTGGAGAGTCCAAA_-_ATGCTGCCAGATGCATCAAATTTGAGTAATCATGGAGAGCGTGCCCAGAAACGTATTCTTGATAGGACTGATCTGGACATTTTCAAGGAAAAAGAATTCATGAGAGGTTCACAGTATCATCTGCTGGAATCGATGGATGCACTCTACCCTATAGATGACTCAGCTATGCAAGAAGGGAAAGAGGAAGCAGAGTTATGTACTCCAAAAGATAAATCAAAATACAGTGTTTGTAGGGTTGACGATCGAGTACAGTGTTTCAAAAAATGTGTAGATGATTCAGGGGAATGTACATTTAATACTGTTAAGAAACAGAAAAAGGAGGATCCTTTGTCTGATTTGGCTGCTTCTGACAATGATGAATCTGGATACTTAAAACATCTTGATACTGTGAAGGATCCCATGGACCATTTCTTCTTGAACAAAACCAGCCAGTCTACTGGTCAGCATCAATGGACAAAGAAAGTTCATCAAGAGTGGGCTATCTTAGAAAAGAATTTGCCGGACGCGATTTATGTTAGAGTCTATGAGGATCGGATAGATTTACTTAGGGCTGTAATTATTGGAGCAGCTGGCACACCATATCAAGATGGCCTTTTCTTCTTTGATATTCATCTTCCATCAGAGTATCCTCGAACTCCACCATCAGTACACTATCATTCTGGTGGTCTTCGATTAAATCCCAATCTGTATGAAAATGGGAAGATCTGCCTTAGTCTTTTAAACACATGGACAGGCAGAGGGAATGAAATTTGGGACCCGTTGAATTCAAGCATCCTTCAAGTTCTTGTTTCACTTCAAGGTCTCGTATTAAATTCAAAGCCTTACTTCAACGAGGCTGGATATGAGAAACAGATTGGTAGAGCTGAAGGGGAGAAGAACTCTCTGGCATATAATGAAAATTCTTTCTTGTTATCCTGTAAATCAATGTTATATCTGCTACGTAAACCTCCAAAGCATTTTGAATCATTTGTGAGAGAGCACTTCCGCCAACGGGGCCATTATATTCTTGCTGCCTGCAATGCATATATGATGGGTGCTAAAGTCGGATGTCTTTCAGGAGAAACAATGATGGGAGTGCATGACAGGGCAGACACTCAAAGCACCAGCTCGATTGGTTTCAAGATTATGTTGGCTAAGCTTATTCCAAAGCTTGTTTCAGCATTTAAGGAAGTTGGAGCAGATTGTGAGGAATTTCTAAATGTGTCAGAGCACTTTGGACTTGTTCAGAAGGCTACTATTTGA___ATTAAGGCTCCTATTTGAAAATAATATGTTGAATGTTTTGGATTGTTTGGTGTATTCCTTGTTTGGTCCTTTTCAATACCAAAGACTGTAGAAGCTGTTTGCGCTTTATTAAGATATTCTATGGAAGCTTGCTAGATATTGTAATCATCTTTGTTTTCTCAAACCTCTTGTATGCTATTTTTGTATATTAATAAAGTTGTTTGTTGTATATTAATCAAGTACTTTGTAG

Fln Alignment:

sp_v1.1_unigene382___PKHFESFVREHFRQRGHYILAACNAYMMGAKVGCLSGETMMGVHDRADTQSTSSIGFKIMLAKLIPKLVSAFKEVGADCEEFLNVSEHFGLVQ
A9P2M6_____________PKHFESFVREHFHQRGHYILGACNAYMMGAQVGCLSGEAMMGVHGRADTQSTSSIGFKIMLAKLIPKLVLAFKEVGADCEEFVNASEHFGHVE

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
883	14	85			0.993533
884		85	14		0.993533
885	85			14	0.993533
886			14	85	0.993533
887	14	85			0.993533
888		14		85	0.993533
889	14			85	0.993533
891	85	14			0.993533
892		14		85	0.993533
894	14			85	0.993533
898	14		85		0.993533
899		14		85	0.993533
901	14	85			0.993533
957	87	12			0.992554
958	87	12			0.992554
1286		25	75		0.996473
1288	25			75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain