SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene380

Length: 1208 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene380

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mitochondrial substrate carrier family protein	-	-	82%
FL-Next	sp=Mitochondrial carnitine/acylcarnitine carrier-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	28%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	0.0	84%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q93XM7

Fln msg:

Fln protein: MAGDGAANPSNKLSSAENKPKNDGVAPPYMKAVSGSLGGMVEACCLQPIDVIKTRLQLDRVAHYRGILHCGSTIAKTEGVRALWKGLTPFATHLTLKYTLRMGSNAVLQGAFSDSDTGKLSNKGRMMAGFGAGVLEALMIVTPFEVVKIRLQQQRGLAPELLKYKGPIHCATSIVREEGFLGLWAGAAPTVMRNGINQSAMFTAKNAFDGLLWKKHEGDGRVLLPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRSVETGELKYKGMFHALRTIFAEEGLLALWKGLIPRLMRIPPGQAIMWAVADQVTGLYERRYLHHAHA*

Protein Length: 327

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCATTTGGCTATGCGATTTGATTTTTGTTTCCGGCTCCTGATTCAGATTCTTTTGAGCCCATCTTCTGCCATGCCATTGTAACCCACTAGCAGAAAATCCTCCCAGTTTGGCATCTCC_-_ATGGCAGGAGATGGTGCTGCTAATCCCAGTAACAAACTTTCTTCAGCAGAAAACAAGCCCAAAAATGATGGTGTGGCTCCTCCATATATGAAGGCAGTCTCTGGGTCACTGGGGGGCATGGTGGAAGCCTGCTGCCTGCAGCCCATAGATGTGATCAAGACAAGGCTTCAACTGGACAGGGTAGCGCATTACAGGGGCATTCTGCACTGTGGTTCGACCATTGCGAAAACAGAGGGTGTGAGAGCTTTGTGGAAGGGGCTCACACCCTTTGCAACCCATCTGACCCTCAAGTATACATTGAGAATGGGATCCAATGCAGTGCTGCAGGGGGCCTTCTCAGATTCTGACACCGGGAAACTCAGCAATAAGGGCAGGATGATGGCTGGTTTTGGGGCAGGAGTGCTGGAGGCCCTCATGATTGTTACCCCATTCGAGGTGGTCAAGATTAGGCTACAACAGCAAAGAGGGTTAGCCCCTGAGCTTCTCAAATATAAAGGCCCCATCCATTGTGCAACTAGCATTGTCCGTGAAGAAGGTTTCCTTGGCCTTTGGGCTGGTGCAGCACCGACTGTTATGAGGAATGGAATCAATCAATCAGCAATGTTCACAGCCAAGAATGCTTTTGATGGGCTCCTGTGGAAAAAGCACGAGGGAGACGGTCGAGTTCTCCTGCCATGGCAATCCATGATATCAGGATTTTTGGCAGGAACTGCTGGTCCTGTTTGCACGGGCCCTTTCGATGTCGTGAAAACAAGGTTAATGGCTCAAAGTAGATCTGTTGAAACAGGTGAACTCAAATATAAGGGCATGTTTCACGCGCTGAGAACAATTTTTGCAGAAGAAGGATTGCTAGCCTTGTGGAAGGGATTGATTCCAAGGCTGATGAGAATACCTCCAGGACAGGCTATCATGTGGGCAGTGGCAGACCAGGTCACTGGTTTGTATGAAAGAAGATACTTGCACCATGCTCATGCTTAA___ATGTTTTAGGCATATATGTTTAAGTGAGAACTTAATGCTAGTTCCATCATGATGAAGCCTACTAGAGCATA

Fln Alignment:

sp_v1.1_unigene380___VAPPYMKAVSGSLGGMVEACCLQPIDVIKTRLQLD------RVAHYRGILHCGSTIAKTEGVRALWKGL-TPFATHLTLKYTLRMGSNAVLQGAFSDSDTGKLSNKGRMMAGFGAGVLEALMIVTPFEVVKIRLQQQRGLAPE--------LLKYKGPIHCATSIVREEGFL-GLWAGAAPTVMRNGINQSAMFTAKNAFDGLLWKKHEGDGRVLLPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRSVETGELKYKGMFHALRTIFAEEGLLALWKGLIPRLMRIPPGQA
Q93XM7_____________MADAWKDLASGTVGGAAQLVVGHPFDTIKVKLQSQPTPAPGQLPRYTGAIDAVKQTVASEGTKGLYKGMGAPLATVAAFNAVL-FTVRGQMEGLLRSEAGVPLTISQQFVAGAGAGFAVSFL-ACPTELIKCRLQAQGALAGASTTSSVVAAVKYGGPMDVARHVLRSEGGARGLFKGLFPTFAREVPGNATMFAAYEAFKRFL--AGGSDTSSLGQGSLIMAGGVAGASFWGIVYPTDVVKSVLQVDDYK----NPRYTGSMDAFRKILKSEGVKGLYKGFGPAMARSVPANA

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
906			10	89	0.999919
911	89			10	0.999919
912	89	10			0.999919
914	89	10			0.999919
941		14	85		1.0
942			14	85	1.0
946	85	14			1.0
947	85	14			1.0
948		85		14	1.0
949	85			14	1.0
954	85			15	1.0
971	90		9		0.999872
975			9	90	0.999872
976	9			90	0.999872
978	90	9			0.999872
979		90		9	0.999872
980			90	9	0.999872
981		90	9		0.999872
986	90			9	0.999872
987		9	90		0.999872
989	90	9			0.999872
1211	42			42	1.0
1212	25			75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
744	756	AATC AATC AATC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain