SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene372

Length: 1665 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene372

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9RR05_RICCO	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	f-box protein	-	-	61%

Source	InterPros	Term	Type	Identity
Blast2go	F-box domain, cyclin-like	IPR001810	-	61%
Blast2go	Galactose oxidase, beta-propeller	IPR015916	-	61%
Blast2go	F-box domain, Skp2-like	IPR022364	-	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8M6

Fln msg: your sequence is shorter than subject: 398 - 445

Fln protein: LLSCDRRTLDEMQWYDLHEDILERVLARIPTSSFFQFRSVCKGWSSLINSPSFMQACSEVPSRRPWFYMVDSKNDESVVYDTEINKWHHIKCPCDPSENVKSKPVASAGGLLCFRSPLGYFTVCNPLTSRCRKLPNTETTRPIHAIAMVSYLNSYKVIVIYGETPVFVIKVYDSSKDCWSEPSINWNIEELRTGKSSSKQDIANDDETVYFLNKGGNVVARDMRRNPSKEFSSILTSTQHGEETIYFLNRGGKVVSCNMQKGLWNEFPPLLPSHSEYSIDLVDCGGRMLVVILHELMESATIRIWELHDTKSEWVQVLALPPAMSHDYFGKKADINCVGYDNMVMICISSCRLHRVILCNIENNSWQELPRCYVPGSRKVKKFASAFPFEPRLEASV*

Protein Length: 399

Fln nts: CTTTTGAGTTGTGATCGTAGAACCCTGGATGAAATGCAGTGGTATGATTTGCATGAAGATATCTTAGAGAGAGTGCTTGCACGGATTCCCACTTCTAGCTTCTTTCAATTTCGTTCAGTGTGCAAAGGATGGAGCTCTCTCATAAACTCCCCAAGTTTTATGCAAGCCTGTTCGGAGGTTCCATCCAGGAGACCATGGTTCTACATGGTAGACTCAAAGAATGATGAAAGCGTTGTATATGATACAGAGATTAATAAATGGCATCATATTAAATGTCCCTGTGACCCAAGTGAAAATGTGAAGTCCAAGCCAGTAGCATCTGCGGGAGGTCTGCTGTGTTTCAGGTCTCCCCTAGGATATTTCACTGTCTGCAATCCTCTTACATCTCGTTGCCGCAAGCTACCAAATACAGAGACTACACGGCCAATACATGCCATTGCTATGGTCTCATATCTGAACTCATACAAGGTAATAGTTATTTATGGTGAAACCCCTGTTTTTGTCATTAAGGTGTATGACTCATCCAAAGACTGTTGGAGTGAGCCTTCTATCAATTGGAACATCGAGGAGTTGAGAACAGGAAAGTCATCATCAAAACAGGACATCGCCAATGATGATGAGACTGTTTATTTTCTGAACAAAGGAGGCAATGTAGTTGCCCGAGACATGAGACGCAATCCTTCAAAGGAATTCTCATCTATCCTGACATCGACACAACATGGGGAAGAAACAATCTATTTTCTCAACAGAGGGGGCAAGGTAGTATCTTGCAACATGCAAAAAGGTCTCTGGAACGAGTTTCCACCTTTATTGCCTTCACATTCTGAATATTCTATAGATCTTGTTGATTGTGGGGGGCGAATGCTCGTGGTAATCCTCCATGAATTGATGGAAAGTGCTACTATACGTATATGGGAGTTGCATGACACAAAGTCAGAGTGGGTGCAGGTGTTGGCTCTCCCCCCTGCAATGTCTCATGACTATTTTGGAAAGAAGGCTGACATAAACTGCGTTGGTTATGACAATATGGTCATGATTTGCATAAGTTCTTGTCGGTTGCACCGTGTAATATTATGTAACATTGAAAATAACTCATGGCAGGAATTGCCCCGATGTTATGTCCCAGGAAGCAGGAAAGTGAAAAAGTTTGCCTCTGCCTTTCCATTTGAACCCAGGCTGGAAGCCTCGGTCTGA___ATTACCTTAATCTTGTTTCTCTTCAGACTAGATCCATGCACTGTGTCCATGGATATAATGGGCTGCTCTGCTTTACAATTATTTCCTTCACCTAATAATCCAGATTACTTATCTCTAGTTTTCCACTTAGGCTTACCCGTTGTCTTTTTAGCCTATGTTAATTTCCGGCCATCGTGCCCCTAAGTTTGTGAAAACATCTTGGCGGATTTTGTTGGAAATGCCTATAACAAAGGTTGGCGTCTAATTCAGAAATCGGTGTACATTATGTGAATTGACACATTATACAAGGATGCTTTTATTAGTGTGCAAGTTTGTTTCAGTTTATCATGTGAGCTAGTGAGCTTAAATGTAACTCCATGCTTATTTGGCACCCATGCTCTTTTCATGGTTGGGGAGGTTATTATACTTTGTATCATTGTTCTATATAATGAAAGGTACCTAAATCTCCATAGTTGAACTATATTTCAGACG

Fln Alignment:

sp_v1.1_unigene372___LSC-DRRTLDEMQWYDLHEDILERVLARIPTSSFFQFRSVCKGWSSLINSPSFMQACSEVPSRRPWFYMVDSKNDESVVYDTEINKWHHIKCPCDPSENVKSKPVASAGGLLCFRSPLGYFTVCNPLTSRCRKLPNTETTRPIHAIAMVSYLNSYKVIVIYGETPVFVIKVYDSSKDCWSEPSINWNIEELRTGKSSSKQDIANDDETVYFLNKGGNVVARDMRRNPSKEFSSILTSTQHGEETIYFLNRGGKVVSCNMQKGLWNEFPPLLPSHSEYSIDLVDCGGRMLVVILHELMESATIRIWELHDTKSEWVQVLALPPAMSHDYFGKKADINCVGYDNMVMICISSCRLHRVILCNIENNSWQELPRCYVPGSRKVKKFASAFPFEPRLEASV
D5A8M6_____________ISCEDPMIIDKISCGELHEDLLARVLARLPVSSFFRFRSVCKGWNSMMYSPSFLNACSEVPSRCPWFYMVDSKFDQGIVYDTEVNKWHHINLPSCLSKNVKCKPVASAGALICFESSLGNFIVCNPLTGQCCKLPHLKITQTIHAITMVAFKKSYKIILIYGDLPTFVMKVYDSSKQYWSQPSISCNIKEIRYGKCYLKQNVASDDGIVYFLNKGGNVVASDVRRSPSKEYSSILTSGHGGEEIVYFLNRGGKVVACNTHKGLWYEFPPLLPSPLEYSLDIVNCGGRMFVVVLLEFLESATVRIWEYNETVFNWVQVLAMPPSMSQQYYGKKADINCIGYDNLIMICISSGQFNSQVLCNILEKSWLELPPCYLSGSHKVDKFVSAFPFEPKLEASV

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
458	75			25	0.996473
459		75	25		0.996473
460			25	75	0.996473
461		75	25		0.996473
539			80	20	0.995493
705			85	14	0.993533
804	87		12		0.992554
871	12		87		0.992554
897		14		85	0.993533
1027	72			27	1.0
1062		72		27	1.0
1121	38			61	1.0
1310		16		83	0.994512
1368			33	66	0.997452
1371		33		66	1.0
1397		33		66	1.0
1481	57		42		1.0
1504	16		83		0.994512
1530	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain