SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene367

Length: 1010 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene367 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RUJ7_RICCO	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	atp binding	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	71%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	71%
Blast2go	membrane	GO:0016020	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase, AAA-type, core	IPR003959	-	0.0	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLW3

Fln msg: Distance to subject end: 151 aas, your sequence is shorter than subject: 321 - 473

Fln protein: MNMEVWSNLGSILATLIFIRSIVREYLPRELCDLFSKSLRRLLGMVSSYISVVIEENDGMKVSEVYEAVQTYLSARSSSAAERLKLKKPKNSKDFTFSLDNNQKISDKFEDIKVRWAFHSIELNQKVRSPWNLASDEKRYYELRFHKKHKHKIFGEYLPHVITEGKNLELRSRNRKIYTNEYRYWSPVVFDHPATFGTLALEPEQKQEILEDLQRFQRGEKYYRQVGRAWKRGYLLYGPPGTGKSSMIAAMANFLDYDIYDLELTQVKSNTELRKLLIATTNKSIIVIEDIDCSLDLSDRKKKKKKAETDEAKDKKAVGAW

Protein Length: 322

Fln nts: ATGGGGGTGTTTATGTTCTGATAAAAAATTTGCTGCCCGAATTTA_-_ATGAATATGGAGGTCTGGTCCAATTTGGGGTCGATTTTGGCGACCCTCATATTCATACGGAGCATAGTTCGAGAGTACTTACCGCGAGAACTCTGCGATTTGTTTTCCAAATCGCTGCGCAGGCTGTTGGGTATGGTTTCTTCTTACATCTCAGTTGTGATAGAGGAGAATGATGGGATGAAAGTGAGCGAAGTTTATGAAGCAGTGCAGACTTACCTGAGCGCAAGATCGTCTTCGGCTGCGGAGAGGTTAAAACTGAAGAAGCCTAAGAATAGCAAGGACTTTACCTTTAGCTTGGACAACAACCAGAAAATCTCTGACAAATTTGAGGACATCAAAGTACGGTGGGCCTTCCACAGCATAGAGCTGAACCAGAAGGTCAGGTCCCCCTGGAATTTGGCCTCCGACGAGAAACGCTATTACGAGCTCAGATTTCACAAGAAGCACAAGCACAAGATATTCGGTGAGTATCTTCCCCATGTCATAACCGAAGGCAAAAATTTAGAGCTCAGAAGCCGAAACCGGAAGATTTACACCAATGAATACCGCTACTGGTCGCCCGTTGTGTTCGATCATCCTGCGACTTTCGGTACTCTGGCTCTGGAACCAGAGCAGAAGCAGGAGATCCTGGAAGACCTGCAGAGGTTCCAGAGGGGAGAGAAGTATTACAGGCAAGTTGGGCGGGCGTGGAAGAGGGGTTATTTGCTCTATGGTCCTCCTGGAACGGGCAAGTCCAGTATGATTGCTGCCATGGCTAATTTTCTCGATTACGACATCTATGACCTGGAGCTCACCCAAGTGAAAAGCAATACAGAACTGAGAAAGCTTCTCATCGCTACCACCAACAAATCGATAATCGTGATAGAGGATATCGATTGCTCTCTCGATCTCTCGGACCGCAAGAAGAAGAAGAAGAAGGCAGAGACAGATGAGGCGAAGGACAAAAAAGCCGTCGGAGCCTGGTA

Fln Alignment:

sp_v1.1_unigene367___MNMEVWSNLGSILATLIFIRSIVREYLPRELCDLFSKSLRRLLGMVSSYISVVIEENDGMKVSEVYEAVQTYLXXXXXXXAERLKLKKPKNSKDFTFSLDNNQKISDKFEDIKVRWAFHSIELNQKVRSPWNLASDEKRYYELRFHKKHKHKIFGEYLPHVITEGKNLELRSRNRKIYTNEYRYWSPVVFDHPATFGTLALEPEQKQEILEDLQRFQRGEKYYRQVGRAWKRGYLLYGPPGTGKSSMIAAMANFLDYDIYDLELTQVKSNTELRKLLIATTNKSIIVIEDIDCSLDLSDR
B8LLW3_____________MKMEVWSNLGSILATLIFIRSVVREYFPRELCDLFSKSLRRLLGMVSSYISVVIEENDGMKVSEVYEAVQTYLSARSSSAAERLKLKKPKNSRDFTFSMDSNQRISDKFEDIKVRWAFHSIELSQKTRSPWNPGSDEKRYYELKFHKKHKHKIFSEYLPHVITEGKNLELRSRNRKIYTNEYRYWTSVVFDHPATFGTLALETEQKQEILEDLERFSKAEKYYRQVGRAWKRGYLLYGPPGTGKSSMIAAMANFLDYDIYDLELTQVKNNTELRKLLVATTNKSIIVIEDIDCSLDLSDR

SSRs (tot: 1)

Start position	End position	Sequence	Length
48	65	CTT CTT CTT CTT CTT CTT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain