SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene365

Length: 1199 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene365

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	41%
Blast2go	protein	-	-	3.96764e-28	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Sterile alpha motif homology	IPR010993	-	3.96764e-28	65%
Blast2go	Sterile alpha motif, type 2	IPR011510	-	3.96764e-28	65%
Blast2go	Sterile alpha motif/pointed domain	IPR013761	-	3.96764e-28	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HXM8

Fln msg: your sequence is shorter than subject: 210 - 235

Fln protein: RRDLGFMGIGKLGPIEIIMDWFGWLSESDLEPCLVYEYGLLFAQNELETEDIASFNHEFLQSMGIGIAKHRLEILKLAKRERGKSTPYVQRLVSSLKKTKRRVRRFVHGFLRPPPPSEPTLYVSASKVFCRGNRSCRRLGGLPPTLALKNGEAVVFGRGDAKKKKSPLRLKAEPEDFRGCTPQHNDRVSPVNSGGIWSWASMFDDLKPT*

Protein Length: 211

Fln nts: CGTCGTGACCTTGGCTTTATGGGGATCGGGAAATTGGGACCAATTGAGATTATCATGGACTGGTTCGGCTGGCTCTCGGAATCGGACCTGGAACCTTGTCTGGTCTACGAGTATGGCCTCTTGTTTGCCCAGAACGAGCTGGAAACGGAGGATATTGCATCTTTCAACCATGAATTCTTGCAGAGCATGGGAATTGGAATCGCAAAGCACAGGCTGGAGATTTTGAAGTTAGCCAAGCGCGAGCGGGGGAAATCGACCCCGTATGTCCAGAGGCTTGTGTCTTCTTTAAAGAAAACGAAGCGCCGCGTTCGGAGATTTGTTCACGGTTTTCTCCGCCCACCACCGCCTTCGGAGCCGACTCTGTATGTCTCAGCTTCGAAGGTATTTTGCAGAGGAAATCGCAGCTGTAGGCGCTTGGGCGGGTTACCGCCTACTCTGGCTCTCAAGAATGGGGAGGCGGTCGTTTTTGGGCGCGGGGATGCCAAGAAGAAGAAAAGTCCCTTGAGATTGAAAGCCGAGCCAGAGGATTTTCGTGGCTGTACTCCTCAGCATAATGATCGAGTTTCGCCTGTTAATAGTGGCGGGATTTGGTCATGGGCGTCCATGTTTGACGATCTGAAGCCCACTTAA___GGGTTCATAGCTTTTTCTTGATAGTTAATGGCGGGCTATTGGAATTACGATTCTTGTTTCTTTTCTGTCTTGTTTGCAGAGGCATCCAGAACAGAGTACTAATGTGGAATGGAAAGCACAGTGTGATCCTTAGATAGATTGTATTTGGAATTGGTTTTGAATTGGATTTAGTCTGTAATGTTGTATTATGAATATTTTAAAGCAGGTGGTCATGTGCAGTGAGAATTTCTGCACAAATGACTTGTAACTTGTAAGTCTTGAATATCACAAACATGACACAGCACAAGTCATGTTTAGTTGATAATGGGTAGGTCAGAAAAACAGAGACAAGTTTGCATCTCCACAGGGAGAGGGTGTACTTGTGAATGCAACTGCAGAATTTTGTGAAAGGTTCACTTGTCTGTAGATTGTAGAAATTTGATGGACAGCACATCAATTTTAGTTGAAGAGAGTTTCATTGTATGGGGCAGGTTGTACCAGATTTAATTGTATTGTATATGTTTAATAATGAAAAATTAAAAATCATGAGGGGTATCGTTTTTACCACATACCTCTCAATTTATTATTGC

Fln Alignment:

sp_v1.1_unigene365___GPIEII-MDWFGWLSESDLEPCLVYEYGLLFAQNELETEDIASFNHEFLQSMGIGIAKHRLEILKLAKRERGKSTPYVQRLVSSLKKTKRRVRRFVHGFLRPPPPSEPTLYVSASKVFCRG---NRSCRRLGGLPPTLALKNGEAVVFGRGDAKKKKSP--LRLKAEPEDFRGCTPQHNDRVSPVNSGGIWS-------WASMFDDLKPT
F6HXM8_____________GPIPLTAMDWFSWLSKTGLEPSLVYEYALAFSQNELEEEDISYFNHEFLQSMGISIAKHRLEILKLARKERGASPRAMSRLIIAIKRTKRCLAKYIRTWVHREESALVVVPRPGYGSRWRGAMLKRNKRMVMATQGRLMLTNGSPKVVSKRRIDSFSSPAVYNLPSE-EKIDGNGDGDGDGV----DDGYWSTVVEEIRWDTMFQDMKPT

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
679		77	22		0.999999
680		22	77		0.999999
681	88		11		0.923564
758		22		77	0.999999
919		15		84	0.999986
980	45			54	1.0
1076	33		66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain