SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene360

Length: 2597 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene360
ATGGGGTCCTGGATCTCGCTGGAAGAAGGGAAAACTGCTAGGAAGGGGGACATTTGGACATGTTTATGCTGGTCTTAACAGTGAAAGTGGCAAAATGTGTGCGATGAAGGAAGTTACACTGTTTGGTGACGATCCAAAGTCCAAGGAAAGTGTAAAGCAGTTATCACAGGAAATAACCTTGCTTAGTGGGCTCAGGCATAAAAACATAGTGCAGTACTATGGGAGTGAAATGGTTGATGATAAACTGTATATTTACCTTGAATATGTTTCTGGTGGGTCTATACACAAACTACTTCAAGAATATGGCCAGTTTGGAGAGCCAATTATTCGCAGCTATACACGACAGATTCTTGCAGGATTGGCATATTTGCATAGCAAAAGTACTGTGCACAGGGACATCAAAGGAGCCAACATGCTGGTGGATCCCAATGGTCAAGTAAAGCTGGCAGATTTTGGCATGGCGAAACATATCACTGCACAGGCCTGCCCTTTGTCATTCAAAGGAAGTCCATATTGGATGGCTCCTGAGGTCATCAAGAGTTCAAATGGATATAATCTGGCTGTGGACATTTGGAGTCTTGGCTGTACAGTTCTAGAGATGGCTACCACAAAGCCACCTTGGAGTGAGTACGAGGGGATTGCTGCAATGTTCAAAATTGGCAATAGTAAGGAGCTTCCCTCTATTCCCGACTCTCTTTCGGATGAAGGAAAGGAATTTGTGAGACTTTGCTTGCAACGCGATCCAGCAAATCGTCCTGCAGCTGCGCAACTTTTAGAACACCCTTTTGTAAAAGATGCAGCACCATATGTAAAATTGGATGTTACAACACAAAGTGATGATGTGTTGCCTTTGACAAGTAATGCTGATCGCTCTATGAATGTCACGCAAGGTGTCGGACACATGAGGAATCTTTCTTCTCTTGATATAGACTATGCAGCAACACAGTCGAAAGGAAAATTTCCCTATCAATCGTCAAGTGATCATTCCAATTTACAGAAGAACATATCTTTGCCAGTATCTCCCTCAGGAAGTCCATTAATGCAGCCACGATCTCCATGTCATAGAAGCGGCATGATGTCTCCTTCACCGATATCAACCCCACTTGTTAACTCTGGTTCTTCAACTCCTCTGACTGGAGGTCATGGTGCCATCCCATTCCAAGTAAATGGAGCTCTGAGACAGTCTACATATGTGGATGAAGGTTTTGGAAACATGCCAAGATTACCTAATGGTCCATGTATCAATGTCTCAAGTTTGAATGGTCCTTATCATGATTGCAGACAGGATGTTTACTTTGGAACACAGGCAGTCCATACTCCAGAAGGCTCCCCTAGACTGCGAGATCATCAAATAGCAGCAAATGGTGATATTCTAGGGATAGCATTTGGCAGAATAACAAGTGATAGCAATGGTGAATTTCAAAGGCAGTATGGTGGTCAAGTTGCTTTAGCTGAACATGTGTCACAGCAGCTTCTGAAGATTCCATCCAAACTTCCTGTAATTGATTTTAGACCTGGTTCTCCTATGATTGGTCGTGCAAGTGGTCATGACTACTATTGAAGGTAGTTATGCTTTAGCTTTCTCCAGCAAAGCATGACCAAGGAACATCGGTGGCTGATGGGGATCATTTGTAGATTAATTGTTAAACTAAACTTGTGAAATAATATCCAAGATTTGTTTCTGAGCTGACCTTAATTTAGTACACTGTATTGTTGTAGTTCATATTGGGATGGGTGCATTGACAATATGATTCTCTTTACCATAATGAAGGAGCGTATTTGCACCACATAAGTTCCAAGTTTTAATATATGTGACTGCAAGTCGATTATTTTGTAATCAGTGCACAGACAATGCAAGAGACAGAAAAAATGTATACTTGAAGGGGTTCTGTTTGGTAAAAATGGAGGTTAGTTGACAAGGCAACTTTTCTTATATTAACCATTTGTTTTCTTGTGGCCACTACTAAGAAAAGCTTGGAGCCGAAATATAATTGTCCAAAGTTTGGCTGCCACCAGTGGCACGATCAATAGGAGTGTTGGCTGGGCCTTTATTAGTTACAACCATGTCCGACAAATTTTCAGGTCTTGAAGAATAATCTATGAAGTCCAATGTTCTATCAAGTTTTCTACATTTCAGTAGATAATGAAGTGGATAACGGCTGCCTGAAAAGTCATTTATTTTAATTTATTGATAATTTACCTCGGGCATTTTTACATTCATGACGAAATGGTTTTAGGGTTATTGCTTTTTCTCTGTACTTTATATTTTTTGGCGTCTGCCAGAGCTATTTTCTTATGTAAAAATGCTTGTCTGAAATGTTTAGAGCTAAAGTCTGCCTATGCTTGCATGGTAAATATAGCTAAAATATATCACCAAATGGATATGGTCGGAATGGAGATACATTATATGGTATACTCATACTAAAGGTAACGACGCAATTTGGGCAAGTCATATGGTGGGTCTCTTTAAAAGAAATATGTGACATCTGTTTGCTGGGCTGATGCTGCTCATTTGATGGGGCCATCTTTAAGTGTTCATTTTATTTATTTAGGTCATCGGATTGTATCTGAGGCAGGCCGTGGTGGTATTTTGGACG

Ace file of the UniGene sp_v1.1_unigene360

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	stomatal complex morphogenesis	GO:0010103	Biological Process	0.0	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR19

Fln msg: your sequence is shorter than subject: 520 - 902

Fln protein: WGPGSRWKKGKLLGRGTFGHVYAGLNSESGKMCAMKEVTLFGDDPKSKESVKQLSQEITLLSGLRHKNIVQYYGSEMVDDKLYIYLEYVSGGSIHKLLQEYGQFGEPIIRSYTRQILAGLAYLHSKSTVHRDIKGANMLVDPNGQVKLADFGMAKHITAQACPLSFKGSPYWMAPEVIKSSNGYNLAVDIWSLGCTVLEMATTKPPWSEYEGIAAMFKIGNSKELPSIPDSLSDEGKEFVRLCLQRDPANRPAAAQLLEHPFVKDAAPYVKLDVTTQSDDVLPLTSNADRSMNVTQGVGHMRNLSSLDIDYAATQSKGKFPYQSSSDHSNLQKNISLPVSPSGSPLMQPRSPCHRSGMMSPSPISTPLVNSGSSTPLTGGHGAIPFQVNGALRQSTYVDEGFGNMPRLPNGPCINVSSLNGPYHDCRQDVYFGTQAVHTPEGSPRLRDHQIAANGDILGIAFGRITSDSNGEFQRQYGGQVALAEHVSQQLLKIPSKLPVIDFRPGSPMIGRASGHDYY*

Protein Length: 521

Fln nts: ATGGGGTCCTGGATCTCGCTGGAAGAAGGGAAAACTGCTAGGAAGGGGGACATTTGGACATGTTTATGCTGGTCTTAACAGTGAAAGTGGCAAAATGTGTGCGATGAAGGAAGTTACACTGTTTGGTGACGATCCAAAGTCCAAGGAAAGTGTAAAGCAGTTATCACAGGAAATAACCTTGCTTAGTGGGCTCAGGCATAAAAACATAGTGCAGTACTATGGGAGTGAAATGGTTGATGATAAACTGTATATTTACCTTGAATATGTTTCTGGTGGGTCTATACACAAACTACTTCAAGAATATGGCCAGTTTGGAGAGCCAATTATTCGCAGCTATACACGACAGATTCTTGCAGGATTGGCATATTTGCATAGCAAAAGTACTGTGCACAGGGACATCAAAGGAGCCAACATGCTGGTGGATCCCAATGGTCAAGTAAAGCTGGCAGATTTTGGCATGGCGAAACATATCACTGCACAGGCCTGCCCTTTGTCATTCAAAGGAAGTCCATATTGGATGGCTCCTGAGGTCATCAAGAGTTCAAATGGATATAATCTGGCTGTGGACATTTGGAGTCTTGGCTGTACAGTTCTAGAGATGGCTACCACAAAGCCACCTTGGAGTGAGTACGAGGGGATTGCTGCAATGTTCAAAATTGGCAATAGTAAGGAGCTTCCCTCTATTCCCGACTCTCTTTCGGATGAAGGAAAGGAATTTGTGAGACTTTGCTTGCAACGCGATCCAGCAAATCGTCCTGCAGCTGCGCAACTTTTAGAACACCCTTTTGTAAAAGATGCAGCACCATATGTAAAATTGGATGTTACAACACAAAGTGATGATGTGTTGCCTTTGACAAGTAATGCTGATCGCTCTATGAATGTCACGCAAGGTGTCGGACACATGAGGAATCTTTCTTCTCTTGATATAGACTATGCAGCAACACAGTCGAAAGGAAAATTTCCCTATCAATCGTCAAGTGATCATTCCAATTTACAGAAGAACATATCTTTGCCAGTATCTCCCTCAGGAAGTCCATTAATGCAGCCACGATCTCCATGTCATAGAAGCGGCATGATGTCTCCTTCACCGATATCAACCCCACTTGTTAACTCTGGTTCTTCAACTCCTCTGACTGGAGGTCATGGTGCCATCCCATTCCAAGTAAATGGAGCTCTGAGACAGTCTACATATGTGGATGAAGGTTTTGGAAACATGCCAAGATTACCTAATGGTCCATGTATCAATGTCTCAAGTTTGAATGGTCCTTATCATGATTGCAGACAGGATGTTTACTTTGGAACACAGGCAGTCCATACTCCAGAAGGCTCCCCTAGACTGCGAGATCATCAAATAGCAGCAAATGGTGATATTCTAGGGATAGCATTTGGCAGAATAACAAGTGATAGCAATGGTGAATTTCAAAGGCAGTATGGTGGTCAAGTTGCTTTAGCTGAACATGTGTCACAGCAGCTTCTGAAGATTCCATCCAAACTTCCTGTAATTGATTTTAGACCTGGTTCTCCTATGATTGGTCGTGCAAGTGGTCATGACTACTATTGA___AGGTAGTTATGCTTTAGCTTTCTCCAGCAAAGCATGACCAAGGAACATCGGTGGCTGATGGGGATCATTTGTAGATTAATTGTTAAACTAAACTTGTGAAATAATATCCAAGATTTGTTTCTGAGCTGACCTTAATTTAGTACACTGTATTGTTGTAGTTCATATTGGGATGGGTGCATTGACAATATGATTCTCTTTACCATAATGAAGGAGCGTATTTGCACCACATAAGTTCCAAGTTTTAATATATGTGACTGCAAGTCGATTATTTTGTAATCAGTGCACAGACAATGCAAGAGACAGAAAAAATGTATACTTGAAGGGGTTCTGTTTGGTAAAAATGGAGGTTAGTTGACAAGGCAACTTTTCTTATATTAACCATTTGTTTTCTTGTGGCCACTACTAAGAAAAGCTTGGAGCCGAAATATAATTGTCCAAAGTTTGGCTGCCACCAGTGGCACGATCAATAGGAGTGTTGGCTGGGCCTTTATTAGTTACAACCATGTCCGACAAATTTTCAGGTCTTGAAGAATAATCTATGAAGTCCAATGTTCTATCAAGTTTTCTACATTTCAGTAGATAATGAAGTGGATAACGGCTGCCTGAAAAGTCATTTATTTTAATTTATTGATAATTTACCTCGGGCATTTTTACATTCATGACGAAATGGTTTTAGGGTTATTGCTTTTTCTCTGTACTTTATATTTTTTGGCGTCTGCCAGAGCTATTTTCTTATGTAAAAATGCTTGTCTGAAATGTTTAGAGCTAAAGTCTGCCTATGCTTGCATGGTAAATATAGCTAAAATATATCACCAAATGGATATGGTCGGAATGGAGATACATTATATGGTATACTCATACTAAAGGTAACGACGCAATTTGGGCAAGTCATATGGTGGGTCTCTTTAAAAGAAATATGTGACATCTGTTTGCTGGGCTGATGCTGCTCATTTGATGGGGCCATCTTTAAGTGTTCATTTTATTTATTTAGGTCATCGGATTGTATCTGAGGCAGGCCGTGGTGGTATTTTGGACG

Fln Alignment:

sp_v1.1_unigene360___PGSRWKKGKLLGRGTFGHVYAGLNSESGKMCAMKEVTLFGDDPKSKESVKQLSQEITLLSGLRHKNIVQYYGSEMVDDKLYIYLEYVSGGSIHKLLQEYGQFGEPIIRSYTRQILAGLAYLHSKSTVHRDIKGANMLVDPNGQVKLADFGMAKHITAQACPLSFKGSPYWMAPEVIKSSN-GYNLAVDIWSLGCTVLEMATTKPPWSEYEGIAAMFKIGNSKELPSIPDSLSDEGKEFVRLCLQRDPANRPAAAQLLEHPFVKDAAPYVKLDVTTQSDDVLPLTSNADRSMNVTQGVGHMRNLSSLDIDYAATQSKGKFPYQSSSD---HSNLQKNISLPV---SPSGSPLMQPRSPCHRSGMMSPSPISTPLVNSGSSTPLTGGHGAIPFQVNGALRQSTYVDEGFGNMPRLPN-----GPCINVSSLNGPYHDCRQDVYFGTQAVHTPEGSPRLRD
B8LR19_____________PG-RWQKGKLLGCGTFGTVYVGFNRETGDMCAMKEVPLVPDDSKSSESIKQLEQEINLLSGLEHPNIVQYYGSETVEDLFYIYLEYVPGGSIYKLVNDYGPLEEPVIRIYTRQILSGLAYLHSMNTVHRDIKGGNILVDTYGRVKLADFGMAKHINGPATPLSLKGSPYWMAPEVLMQKNTGHDLAVDIWSLGCTVIEMATGKPPWSEYEGAAAMFKVFKS-EVPPIPDSLSPEGRHFVQCCLCRNPAQRPKASQLLEHLFVRNA-------TQQDSSDLLASATSSIKCLSVVHS-PREKNINTFD-------STGMSPILHSGNGKQHQPLSENCQPKIGIFSRYSNPQLSPRSTLEPFSSLSP-PRPAGMATGGA------------FPNNGFLTGVT--KEGPLPIPRSPRGRDGCGGVLNIASRSEFSSDHNRNSPF----TRTPEGSPRRRD

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1120		12		87	0.992554
1121		87		12	0.992554
1140	87		12		0.992554
1148	12		87		0.992554
1157	14	85			0.993533
1252		11		88	0.923564
1255	87			12	0.992554
1307	85		14		0.993533
1422	11			88	0.923564
1423		88		11	0.923564
1424	88		11		0.923564
1479		12	87		0.999964
1827		69		30	1.0
2125	25		75		0.996473
2126	25			75	0.996473
2221			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain