SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene357

Length: 1621 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene357

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	metal ion binding protein, putative	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	71%
Blast2go	metal ion binding	-	-	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7SP84

Fln msg: your sequence is shorter than subject: 375 - 756

Fln protein: FTLHVRFEKYIFLTCRERQVRRLPYHINDPEFADALVDAFLEIATMKPKIIKSPLPQDETQRGGELLNKKEIESQQYLTDYKIVQHPLNEFPDAKPETLKTTRTILQSLKDQIARGVPIIGAGAGTGISAKFEEEGGVDMIIIYNSGRFRMAGRGSLAGLLPFADANAVVLDMANEVLPVVKRVPVLAGVCGTDPFRRMDSFLRQLESIGFAGVQNFPTVGLFDGNFRQNLEETGMGYRLEVDVIHKAHKMGLLTTPYAFNEAEASVMAAAGSDIIVAHMGLTTSGSIGAKTALSLDDSVARVQAITDAAARVNPNVIMLCHGGPISGPKEAEYVLQRTRGVHGFYGASSMERLPVEEAIVKTIKQYKTISASS*

Protein Length: 376

Fln nts: GTTCACTTTACATGTCCGGTTCGAGAAGTATATATTTCTCACATGCAGGGAACGACAGGTTAGGAGACTTCCTTACCACATCAATGATCCAGAGTTTGCAGATGCATTAGTGGATGCCTTCTTGGAGATTGCTACAATGAAGCCTAAAATAATAAAATCTCCTCTTCCTCAAGATGAAACGCAAAGGGGAGGTGAACTTTTGAATAAGAAGGAAATTGAATCTCAACAGTATTTGACAGATTATAAGATAGTTCAACATCCATTAAACGAATTCCCTGATGCCAAACCAGAAACGTTGAAAACAACACGAACCATACTGCAAAGTCTTAAAGACCAAATTGCTCGAGGTGTGCCAATAATTGGGGCTGGAGCAGGAACTGGAATATCTGCTAAGTTTGAAGAAGAAGGCGGTGTAGATATGATAATTATATATAACTCTGGACGCTTTCGCATGGCAGGAAGAGGTTCCTTAGCTGGTTTGCTACCTTTTGCAGATGCTAATGCAGTAGTACTTGATATGGCCAATGAGGTCCTACCAGTTGTAAAAAGAGTACCAGTTCTAGCTGGTGTTTGCGGTACAGATCCATTTAGGCGGATGGATAGCTTTTTGCGGCAGCTAGAGTCTATTGGTTTTGCAGGAGTTCAAAACTTTCCTACTGTTGGTCTATTCGATGGTAATTTTCGCCAAAATCTAGAGGAAACTGGCATGGGATATAGGTTGGAGGTTGATGTGATTCACAAAGCACATAAGATGGGTTTGTTGACCACCCCATATGCATTCAATGAAGCGGAAGCTTCTGTAATGGCAGCTGCAGGTTCTGACATCATTGTTGCACATATGGGGCTCACAACTTCAGGGTCTATCGGTGCAAAAACAGCTCTCTCTTTGGATGACAGTGTTGCACGTGTGCAAGCGATTACTGATGCTGCTGCCCGAGTAAATCCAAATGTGATTATGTTATGCCATGGAGGTCCTATTTCAGGTCCCAAAGAGGCAGAATATGTGCTTCAGAGGACAAGAGGAGTCCATGGCTTCTATGGAGCATCGAGCATGGAGAGGCTACCAGTAGAAGAGGCCATTGTGAAGACTATAAAACAGTACAAAACCATATCAGCGTCATCATAG___ACACAGGAAAAAGGGGTAGGCATGCCAAGGAATTAGAAGTTGGCCTGTTAAATTACTGATCTTGCGACCACAATATGGGAATCAGAATGAGTATGGGAATTAGGAGAATATCACTTTGCTGACATTCCGTAATGTGTCCTCGTGGATTTTTTTCTTATGCATGTGTCTTATGTGGGGAATTTCTCTCTTCTATTGGGTGTAATAAATCATTGTGGGAGTATGCTCTATTGACTGTGGGCATGAAAAAAATCCTCTGTACTTAATCCACTTCCAAGATTCCTATTAAAATGCATTAAGATATCCATGTGTATTTTCTTGTATTTCGACACCTACAACAGAGGAATTTCAATGAATCTAAATGGTAAATATGAAGAAAATTGCACATTGGTTTGTGTGCACGATGTAAAACACTTCTTAGGAGGGATCCTGTATAAGGTTTGATTTTAAACATGTATAAGATGACATCTCCAAATGAATCATAAGTATTCTTTCTTA

Fln Alignment:

sp_v1.1_unigene357___TCRERQVRRLPYHINDPEFADALVDAFLEIATMK-----PKIIKSPLPQDETQRGGELLNKKEIESQQYLTDYKIVQHPLNEFPDAKPETLKTTRTILQSLKDQIARGVPXXXXXXXXXXXXKFEEEGGVDMIIIYNSGRFRMAGRGSLAGLLPFADANAVVLDMANEVLPVVKRVPVLAGVCGTDPFRRMDSFLRQLESIGFAGVQNFPTVGLFDGNFRQNLEETGMGYRLEVDVIHKAHKMGLLTTPYAFNEAEASVMAAAGSDIIVAHMGLTTSGSIGAKTALSLDDSVARVQAITDAAARVNPNVIMLCHGGPISGPKEAEYVLQRTRGVHGFYGASSMERLPVEEAIVKTIKQYKTI
D7SP84_____________TNEDRQVEVYPYHINDPEFANTLVDSFLEIRKRHSEDADPRKIAAFVPNQD-------LHEDSISKPNLLGNETICYSP-SDFPDARPETLQRTRSIIQRLKDQISKGKPIIGAGAGTGISAKFEEAGGVDLIIIYNSGRFRMAGRGSLAGLLPFADANAVVVDMASEVLPVVKEVPVLAGVCGTDPFRRMDSFLKQLELIGFVGVQNFPTVGLIDGNFRQNLEETGMGYGLEVQMIGKAHKMGLLTTPYAFNRDEAVGMAKAGADIIVAHMGLTTSGSIGAKTSVSIEDSVVRVQAIADAAHSINPEVIVLCHGGPISGPQEAEFVLKRTKGVHGFYGASSMERLPVERAITSTVQQYKSI

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
301	90		10		0.90298
440			12	87	0.992554
441			87	12	0.992554
449			12	87	0.992554
456			87	12	0.992554
459		12	87		0.992554
460			87	12	0.992554
461	87	12			0.992554
618		75	25		0.996473
874	83			16	0.994512
875	83		16		0.994512
876	83		16		0.994512
877	83		16		0.994512
946		87	12		0.992554
1155	88		11		0.999937
1274	66			8	1.0
1275	40			60	1.0
1406		18		81	0.999994
1497		14		85	0.993533
1578	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain