SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene343

Length: 3410 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene343
ATGGGGGCATTGGGGGAACTCCTCGGCGATTTACCATTCGTCTGCCACACGCTTCTCAACACTTCAAACGACGCGGTCCATCAACCCCAAAAACATCCCTGCAACCTCATTTCTTGCCGGATCGGGCTCGTTTCCTCCCCGATTTCCCCAGTTGCTACCAAATTTAGTCACCTATTTTGACGAATTCTATGTAAATTGTAAAATTTCAGCACTTTTTTGGCATTCTCTGATGAATCCTGAGCAATGGATCGGATAAATTTGAGGACATTCTAGCTCAGATCATTGAAGAATTTTGCAAAAGTTTTTTGGGGTTTTGATCCAAATTTAAGCAAAGTTCAGATAATGGAATCAAGCAGGAGGGCAGTGGAATCTTACTGGAGGTCCCGTATGATAGATACTGCGACGGCGGATGACGATAAAATAACACCAATTTATCGCTTGGACGAGATCTGCGACACGATTCGATCCAGCCCCATTGGAATCGTGAAGGAAATGTCTGAATTTATCTTTAAACGCCTGGATCATAAAAGCCCACGAGTCAAGCAAAAGGCTTTGAGATTAATTAAGTACTCGGTAGCAAAAGCTGGAGTAGAATTCAAAAGAGAAATGCAGCGGCACTCAGGAGCTATACGTCAGTTATTTCATTACAGAGGTGAACCAGATGCCCTGAGAGGCGATTCTTTGAATAAAGCAGTCCGTGATACTGCCCATGAAGCAGTTACAGCTATATTTGCTTCAGATGAGAAGCAAACAACTGCAGAGGATATCAACAAAAGAATACAAGGGTTTGGCAATACTAATTTTGAAATGCCATTGGATGACAGAAAGTCTTTTCTCAGTGAAGTTGTTGGATTTGGAAGTGCATCTATTAAACAAGGCCTGAGCATGATTGGTGGACAATCAAGTGGTTATTTAGATGGACAAAACAATTCAGCTGGAAGTTACAAAGGACCTAGCCTAAGAAAATCTCTTACATCAGAAAGAGATACTTTTGCCAGGCATCAAAGGGAGGAACCATGGACAGAGCCGCAATTTTCAGCTTCTGAACATCGAGAGTTACCATCAAATCAAGATTATACGGTTCTTACTTCTAATGTAAGCAATAACAGTTCTGGGTCCAATCAAACAAGAGGAAATGGTAGAGAAGAGAGACTTTTAGACACTATAACAGCAGCTGGTGGTGTGCGTCTTCAACCCAGCCGTGAAACTATTCAAAACTTCCTTGCAATGGCCTCAAAATTGGATTCTACTTCTTTGAGTCAGGCTCTTAACGTGAAAATCCAGTCACATGTATGGCAGGTACGGTTCAAAGCTATGTGCGTCCTTGAATCAGTCTTAAGGCAAAGAGAAAATACATTCTTTGAAACAGTGGGGGCATTTTTCCAAGAAAATAAAGATGCAATTGTTAATTGCACTGAATCACCCCAAACATCATTAAGAGAGAAGGCAAACCGGGTATTGGGTCTTCTTGGAGGTAGCACAGCAGTTAATGACAAAACCACAGTGACAGAAAAGCTGAACGACAAAACCACAGCAAAGCCTGTTTCTGTTGAGATGCCAGACTTGATAGATACTAGCGAAATGGACTTGCTTGCTGGTGGAGGTGTGTCACAGGCAAAAGATACTGATATCTTGACAAAATCAGCCACTATAGATCTGTTGGGTGATGAATTCTTACCTACTAGAGATGAAGGAAACATTGTAAATATAGAAGAGGATCCTTTTGTTGGGTTGGCCATTCACACTGAAGGAGCTGAAGGCAATGCCTCTACCAATAATCTTTTTTCAGGGTTGGTGCTTGGTAACAGTAGTGAGATGGAGAATGTTGATACAGGAACATCAAACAAGGACAATGGCAGTTTCTTTAGTGATTTTGCTACAAATATAGAACAAAGCAATAGCAAACCTTCTGTACAATCAGACAGCTTGGATGACATTTTTGGTTCTCTGTCCATCAATCAATCTCTATCAGAGAGTTATCAGCAGACTGTGAATTCTGGGAATGCTACTTCTAATGATCCAGGAACGGGGTTTCAGTTTCTTCAGCAGAACCATCCTACAGTATATCAGGCTTTGGATAGTTTACCGAGCTCCCAAATGATGGGTGCAAATTCATCACCTCTACCCTCAGTCAGTTCCGTGTATAACATGCCACCGAATATGGTGATGCATCAAATGTTTCCTTTACAGGCAACAAACTTTGGGCCAATTGGAAATTCTCTTGCTCAGCAGCAGCTACTAGCTGCAATGGCTAATTTGCAGCGTTTGAGAATGGGAGTGGGTTCAGAAACTACAGGCTTTTTTGGGACTGATTCTGGAATGGGCAATGGGCTTGCTCCTACATATTCAGATGGTTTTGACTTTACAGGTGATCCAACACCTAACCGTGTTTCAACTACAGAAAACTCAAGAAAAGAGGAGAAAACAAGGGCTTTTGACTTTATTGCAGACCATATTTCTGCTGCAAAAAGCACGAAGAAAGTCACCTGAACTGTAAGGTATTATAGTTGCAAAAAATTAGATGGGAGAGTCCAGATATCTTCAAGTTCTCCAAATAATGACGTCCACGGTTAATGTGGGAAAGAATGAGGTTTATAATGTGTTTTTTCATTGGATGCGGCTCTTATTTTCAATAAGGAAATAATATATTTCATAGACTCTTTTTTAATAGCCTATCTTGTTACATAGGATTCCTTTCTGCTCTTGTAGTTTGATTTTGTTGTTTGTTGTATAATTGCCTTCGAACTGTCCATAAAATGTATCTTAATTTGTTGAGATCATCAATTATGTGGTTTCATTGATAAAACTAGTCTCTTCTTCCTCCCATGCATCTCGTGCTTTTGCATGCAAGGGAATAATCAGAAAACATTGAAGTGTAGTGTATACCGTGATGATATCTGGAAGGGTGATTATTGTCTGTAGCAGCCCATGAAGATTAAATTTCTGGAAGTGGAATTAAATGGAAGAAAGTTAACTTTGGCAGACCATCATATTACGTGTCATTGCTTTCACCCCTCTTGACCTCATTTTATTTTGGGATGTTTTAGCCACCGTCTCCTTTTGAGAGACAGATGTGAGTACTGTAATTTGCTGGAATTGTGTCAAGGTGTTGCGATTCAGCTCATCCAAATTCAGTCCGATAAATGAGTGGTTGGATGATGGATGACTTATTTTGATTTAATTCATGGTTTTTCCTTGTGAGATGAAACTTCAAACTTCTGTGATTCCAGAATGAGGAAAGAAACGATCGTATTTCTCGTGATGTACATGAATATGTAAAGGAACACATGAGAATATGAAAATGGTTACGTACAACCAATATCGTTTTACTAACAACATAAGCAAACATATGTAATTGCTTACAAATTTGTTTATTCCCAAACAAAAAATGGAGATACTTTTCATGTTAC

Ace file of the UniGene sp_v1.1_unigene343

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=VHS domain-containing protein At3g16270; Arabidopsis thaliana (Mouse-ear cress).	-	-	40%
Blast2go	protein	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	61%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	61%

Source	InterPros	Term	Type	Identity
Blast2go	Epsin domain, N-terminal	IPR001026	-	61%
Blast2go	VHS	IPR002014	-	61%
Blast2go	ENTH/VHS	IPR008942	-	61%
Blast2go	VHS subgroup	IPR018205	-	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9C5H4

Fln msg:

Fln protein: MESSRRAVESYWRSRMIDTATADDDKITPIYRLDEICDTIRSSPIGIVKEMSEFIFKRLDHKSPRVKQKALRLIKYSVAKAGVEFKREMQRHSGAIRQLFHYRGEPDALRGDSLNKAVRDTAHEAVTAIFASDEKQTTAEDINKRIQGFGNTNFEMPLDDRKSFLSEVVGFGSASIKQGLSMIGGQSSGYLDGQNNSAGSYKGPSLRKSLTSERDTFARHQREEPWTEPQFSASEHRELPSNQDYTVLTSNVSNNSSGSNQTRGNGREERLLDTITAAGGVRLQPSRETIQNFLAMASKLDSTSLSQALNVKIQSHVWQVRFKAMCVLESVLRQRENTFFETVGAFFQENKDAIVNCTESPQTSLREKANRVLGLLGGSTAVNDKTTVTEKLNDKTTAKPVSVEMPDLIDTSEMDLLAGGGVSQAKDTDILTKSATIDLLGDEFLPTRDEGNIVNIEEDPFVGLAIHTEGAEGNASTNNLFSGLVLGNSSEMENVDTGTSNKDNGSFFSDFATNIEQSNSKPSVQSDSLDDIFGSLSINQSLSESYQQTVNSGNATSNDPGTGFQFLQQNHPTVYQALDSLPSSQMMGANSSPLPSVSSVYNMPPNMVMHQMFPLQATNFGPIGNSLAQQQLLAAMANLQRLRMGVGSETTGFFGTDSGMGNGLAPTYSDGFDFTGDPTPNRVSTTENSRKEEKTRAFDFIADHISAAKSTKKVT*

Protein Length: 717

Fln nts: ATGGGGGCATTGGGGGAACTCCTCGGCGATTTACCATTCGTCTGCCACACGCTTCTCAACACTTCAAACGACGCGGTCCATCAACCCCAAAAACATCCCTGCAACCTCATTTCTTGCCGGATCGGGCTCGTTTCCTCCCCGATTTCCCCAGTTGCTACCAAATTTAGTCACCTATTTTGACGAATTCTATGTAAATTGTAAAATTTCAGCACTTTTTTGGCATTCTCTGATGAATCCTGAGCAATGGATCGGATAAATTTGAGGACATTCTAGCTCAGATCATTGAAGAATTTTGCAAAAGTTTTTTGGGGTTTTGATCCAAATTTAAGCAAAGTTCAGATA_-_ATGGAATCAAGCAGGAGGGCAGTGGAATCTTACTGGAGGTCCCGTATGATAGATACTGCGACGGCGGATGACGATAAAATAACACCAATTTATCGCTTGGACGAGATCTGCGACACGATTCGATCCAGCCCCATTGGAATCGTGAAGGAAATGTCTGAATTTATCTTTAAACGCCTGGATCATAAAAGCCCACGAGTCAAGCAAAAGGCTTTGAGATTAATTAAGTACTCGGTAGCAAAAGCTGGAGTAGAATTCAAAAGAGAAATGCAGCGGCACTCAGGAGCTATACGTCAGTTATTTCATTACAGAGGTGAACCAGATGCCCTGAGAGGCGATTCTTTGAATAAAGCAGTCCGTGATACTGCCCATGAAGCAGTTACAGCTATATTTGCTTCAGATGAGAAGCAAACAACTGCAGAGGATATCAACAAAAGAATACAAGGGTTTGGCAATACTAATTTTGAAATGCCATTGGATGACAGAAAGTCTTTTCTCAGTGAAGTTGTTGGATTTGGAAGTGCATCTATTAAACAAGGCCTGAGCATGATTGGTGGACAATCAAGTGGTTATTTAGATGGACAAAACAATTCAGCTGGAAGTTACAAAGGACCTAGCCTAAGAAAATCTCTTACATCAGAAAGAGATACTTTTGCCAGGCATCAAAGGGAGGAACCATGGACAGAGCCGCAATTTTCAGCTTCTGAACATCGAGAGTTACCATCAAATCAAGATTATACGGTTCTTACTTCTAATGTAAGCAATAACAGTTCTGGGTCCAATCAAACAAGAGGAAATGGTAGAGAAGAGAGACTTTTAGACACTATAACAGCAGCTGGTGGTGTGCGTCTTCAACCCAGCCGTGAAACTATTCAAAACTTCCTTGCAATGGCCTCAAAATTGGATTCTACTTCTTTGAGTCAGGCTCTTAACGTGAAAATCCAGTCACATGTATGGCAGGTACGGTTCAAAGCTATGTGCGTCCTTGAATCAGTCTTAAGGCAAAGAGAAAATACATTCTTTGAAACAGTGGGGGCATTTTTCCAAGAAAATAAAGATGCAATTGTTAATTGCACTGAATCACCCCAAACATCATTAAGAGAGAAGGCAAACCGGGTATTGGGTCTTCTTGGAGGTAGCACAGCAGTTAATGACAAAACCACAGTGACAGAAAAGCTGAACGACAAAACCACAGCAAAGCCTGTTTCTGTTGAGATGCCAGACTTGATAGATACTAGCGAAATGGACTTGCTTGCTGGTGGAGGTGTGTCACAGGCAAAAGATACTGATATCTTGACAAAATCAGCCACTATAGATCTGTTGGGTGATGAATTCTTACCTACTAGAGATGAAGGAAACATTGTAAATATAGAAGAGGATCCTTTTGTTGGGTTGGCCATTCACACTGAAGGAGCTGAAGGCAATGCCTCTACCAATAATCTTTTTTCAGGGTTGGTGCTTGGTAACAGTAGTGAGATGGAGAATGTTGATACAGGAACATCAAACAAGGACAATGGCAGTTTCTTTAGTGATTTTGCTACAAATATAGAACAAAGCAATAGCAAACCTTCTGTACAATCAGACAGCTTGGATGACATTTTTGGTTCTCTGTCCATCAATCAATCTCTATCAGAGAGTTATCAGCAGACTGTGAATTCTGGGAATGCTACTTCTAATGATCCAGGAACGGGGTTTCAGTTTCTTCAGCAGAACCATCCTACAGTATATCAGGCTTTGGATAGTTTACCGAGCTCCCAAATGATGGGTGCAAATTCATCACCTCTACCCTCAGTCAGTTCCGTGTATAACATGCCACCGAATATGGTGATGCATCAAATGTTTCCTTTACAGGCAACAAACTTTGGGCCAATTGGAAATTCTCTTGCTCAGCAGCAGCTACTAGCTGCAATGGCTAATTTGCAGCGTTTGAGAATGGGAGTGGGTTCAGAAACTACAGGCTTTTTTGGGACTGATTCTGGAATGGGCAATGGGCTTGCTCCTACATATTCAGATGGTTTTGACTTTACAGGTGATCCAACACCTAACCGTGTTTCAACTACAGAAAACTCAAGAAAAGAGGAGAAAACAAGGGCTTTTGACTTTATTGCAGACCATATTTCTGCTGCAAAAAGCACGAAGAAAGTCACCTGA___ACTGTAAGGTATTATAGTTGCAAAAAATTAGATGGGAGAGTCCAGATATCTTCAAGTTCTCCAAATAATGACGTCCACGGTTAATGTGGGAAAGAATGAGGTTTATAATGTGTTTTTTCATTGGATGCGGCTCTTATTTTCAATAAGGAAATAATATATTTCATAGACTCTTTTTTAATAGCCTATCTTGTTACATAGGATTCCTTTCTGCTCTTGTAGTTTGATTTTGTTGTTTGTTGTATAATTGCCTTCGAACTGTCCATAAAATGTATCTTAATTTGTTGAGATCATCAATTATGTGGTTTCATTGATAAAACTAGTCTCTTCTTCCTCCCATGCATCTCGTGCTTTTGCATGCAAGGGAATAATCAGAAAACATTGAAGTGTAGTGTATACCGTGATGATATCTGGAAGGGTGATTATTGTCTGTAGCAGCCCATGAAGATTAAATTTCTGGAAGTGGAATTAAATGGAAGAAAGTTAACTTTGGCAGACCATCATATTACGTGTCATTGCTTTCACCCCTCTTGACCTCATTTTATTTTGGGATGTTTTAGCCACCGTCTCCTTTTGAGAGACAGATGTGAGTACTGTAATTTGCTGGAATTGTGTCAAGGTGTTGCGATTCAGCTCATCCAAATTCAGTCCGATAAATGAGTGGTTGGATGATGGATGACTTATTTTGATTTAATTCATGGTTTTTCCTTGTGAGATGAAACTTCAAACTTCTGTGATTCCAGAATGAGGAAAGAAACGATCGTATTTCTCGTGATGTACATGAATATGTAAAGGAACACATGAGAATATGAAAATGGTTACGTACAACCAATATCGTTTTACTAACAACATAAGCAAACATATGTAATTGCTTACAAATTTGTTTATTCCCAAACAAAAAATGGAGATACTTTTCATGTTAC

Fln Alignment:

sp_v1.1_unigene343___MESSRRAVESYWRSRMIXXXXXXXXKITPIYRLDEICDTIRSSPIGIVKEMSEFIFKRLDHKSPRVKQKALRLIKYSVAKAGVEFKREMQRHSGAIRQLFHYRGEPDALRGDSLNKAVRDTAHEAVTAIFASDE--KQTTAEDINKRIQGFGNTNFEMPLDDRKSFLSEVVGFGSASIKQGLSMIGGQSSGYLDGQN-NSAGSYKGPSLRKSLTSERDTFARHQREEPWTEPQFSASEHRELPSNQDYTVLTXXXXXXXXXXXQTRGNGREERLLDTITAAGGVRLQPSRETIQNFLAMASKLDSTSLSQALNVKIQSHVWQVRFKAMCVLESVLRQRENTFFETVGAFFQENKDAIVNCTESPQTSLREKANRVLGLLGGSTAVNDKTTVTEKLNDKTTAKPVSVEMPDLIDTSEMDLLAGGGVSQAKDTDILTKSATIDLLGDEFLPTRDEG---NIVNIEEDPFVGLAIHTEGAEGNASTNNLFSGLVLGNSSEMENVDTGTSNKDNGSFFSDFATNIEQSNSKPSVQSDSLDDIFGSLSINQSLSESYQQTVNSGNATSNDPGTGFQF-LQQNHPTVYQALDSLPSSQMMG-ANSSPLPSVSSVYNMPPNMVMHQMFPLQATNFGPIGNSXXXXXXXXXXXXXXRLRMGVGSETTG---FFGTDSGMGNGLAPTYSDGFDFTGDPTPNRVSTTENSRKEEKTRAFDFIADHISAAKSTKKVT
Q9C5H4_____________MDTSRRAVESYWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEENGTKPAAPESINRRIEGFGNTNFQVPSNDNKSFLSEVVGIGSASIKQGISNF---AQGHLPKKNENGSSSYRGPNLHRSLTMENENFSRYDPVKLGKDGNYGTSKNTTGGSWGH----ASGEASESSASVRVESKTREEKLLETIVTSGGVRLQPTRDALHVFILEAAKMDAVALSIALDGKLHSPMWQVRMKALCVLEAILRKKEDENFSIVHTYFSENLDAIQRCAESPQSSLREKANKVLSLLNGG-----QSSGLMSSSDNTVKREAAVDLPDLIDTGDSDDTLNN--LNAIDTGSTVATAGPLMDDDWFGDSSDIGLSSSEKKTDDDPFADVSFHPN--EEKESADDLFSGMTVGEKSAAVG---GNHVPDLFDMFGSTA----KLEAEPK-DAKNINDLMGSFSIDENNSN------QKGSSSSTLPQDLFAMPSTTSHQAPENPVGGILGSQNPGFIQNTMLPGGVMPFNFPQGMMMNPAFASQPLNYAAMASLLAQQQQYLGNMSNFQQFGNLNAQGSGNVLSMGTSGGNQSALPDIFQPNF---GNQAP---TSTMNGSKKEDTRAFDFISDHLTSARDTKRVS

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
990	80			20	0.995493
1128	80			20	0.995493
1181		25		75	0.996473
1196	75		25		0.996473
1242	20	20			0.99255
1254		20		80	0.995493
1288		16		83	0.994512
1336	16		83		0.994512
1355	83			16	0.994512
1356		16		83	0.994512
1358		80		20	0.995493
1624	88	11			0.923564
1876	66			33	0.997452
2075		90	10		0.90298
2076	90		10		0.90298
2167		15		84	0.999986
2404			21	78	1.0
2477	87		12		0.992554
2478	12		87		0.992554
2591		14	85		0.993533
2595		21	78		1.0
2597		7	78		0.999974
2617	85		14		0.999981
2619		14		85	0.999981
2623		14		85	0.999981
2624			85	14	0.999981
2625		85		14	0.999981
2630		85	14		0.999981
2632		14		85	0.999981
2635		15		84	0.999986
2637		15		84	0.999986
2638	15	84			0.999986
2807			45	54	1.0
2932		21	71		1.0
2953		10	90		0.90298
2955	90			10	0.90298
2956	90	10			0.90298
2960	14		85		0.993533
2961	85	14			0.993533
2962	85	14			0.993533
2965	85		14		0.993533
2966	85		14		0.993533
2967	85	14			0.993533
2970		14	85		0.993533
2972	85	14			0.993533
2973			85	14	0.993533
2974	85	14			0.993533
3108		16	83		0.994512
3111	83		16		0.994512
3168		20	80		0.995493
3189		20		80	0.995493
3219		20		80	0.995493
3233	16			83	0.994512
3235		83	16		0.994512
3236		83	16		0.994512
3237	83		16		0.994512
3249		16	83		0.994512
3257		83		16	0.994512
3319		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain