SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene324

Length: 2803 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene324
ATGGGGGCACTGCGATGTATGCCGCTGAGGGTGCAAACAGCGATGGGTTGTGCCTAAAATTCGACATCTGCTATGTGGAATTTAACCGATGAGGGTTTGCATTTTCTGTTTACGGCATTGTGCCGTGAAATTTTGATGCCTCTCGGTGGACTTTCGGTGGGGCATCCACAGATTATACGGTTCTATTGATTTCTTTTCAGAGAATTCTGCATTGCAAAGGCCGGAGTGATTTTCTTTGGTTTCATTTGAGGCTCTATGTGTTGGAACCGCCATTTCAAATGAAAACGAGGTGCTGAAATTTTGGCAAAGTATATCTATATATCCTTTCTTTTGGAGAGTGAAATCAAAATGTGGTAATTGACTGCAATATTTTGACCAGAAGCTGAGCAGGAAAAAATCACAGAAGATGGGGTGTTGTGTTTCAATTCCACACAAAAGGCATAGAATTTGTAGGAAGTTTTGTTGGCCAAAATCTGGAAAGAGTCAACAGATTCCGGTTACTGCTACAAATCCTTTACCACATGTTGGTGCTAATAAGGTTGCATGCTCAAAGCCAAAAAAGAGTGCACGTGCTAAAGCTAAGGCTGCGGCTCGAAATATTGGAGCAACTCAGGTTCAACGGCCACATGCCCCCTCTGATTTTCATGGAAGCAATGATGAAGCATGGTTTGATTCTGCAGCTTCTTTAGGGTCAGACTGTGATGAAGATTTCTTAAGTGTTCAAGGAGACTTTTTGCCTTCAGCAGGGAACACCTTGAGTTATGCAGACAGTTCTCAAGGAACACCTCGGACCAGTGTGGAATCTATTAAAGATAGACTATTTAAGCATGATGGCTGCAGTGAGAATTCTCCGACTTTGACCTCCAGTGAAAAAATGAGTAAATTAGGAGAGGTTTTGAGTGAAAAGTTCCCAAATCAAGACAATAATGTTGGTTGTGAAGCAAATGGACTTCATGGGCAAAAGAATGTTGATGAAGCAGGAAATACCAGTGATGTCCTTGTTTCATCAAATGGAAACAAAAATGGGAAAACCAAGGTGTCAGAAGCCCCTCAAAGCAACTCCAATGCTTTGATAGAAGGAACAGATGATTCAGAATGTGAGGAAGAAGGGGTACTTGACCATTGTGGGAAGCATTTGAACAAATCTTGTTTACCTCGATTGATGATTCCGAATGTCAGCTTCACTGAAAAGAAAAGACCATTAAGCCCTGGTCCACCATCTTTTAGAAAGAAGACATCATTGCTCAAGCTATCTTTCAAGCGCAAATCAACAGATGGACATGAGAACGCTAATATCTTTTCTTCAACACAGTTTCTAGAGAGACCTATAGCAGGGTCTCAGGTACCATATTGTCCAGCTGAAAAGGCAATGCCAGGATGTTGGTCTTTTATTGAACCTTCTACATTCAAGCTTCGCAGTGAAAGTTTTTTTAGGGACAAGAAAAAGGATTCCACATCAAATCATGCTGCATTTTACCCATTTGGTGTAGATGTTTTTGTATGTCCAAAAAAAATAGATCATATTGCTCAATATGTGGAACTTCCTACCTTTGACTCAAATGATGGATTGCCATCTCTATTGATTGTAAATATTCAGATGCCATTATATCCAGCAGCAATTTTCCTGGGAGAAAGTGATGGGGAAGGGATGAGTGTTGTAATGTATTTTAAGCTTTCTGAAGGCTATGCTAAACAGGTCGCTGCTCATTTCCAAGATAGCATCCGGCGATTTATTGATGATGAAGTTGAGAAAGTAAAAGGCTTTGCTCTAGATTCTCTGGTGCATTTCAGAGAAAGGTTGAAACTCATAGGCCGAGTGGTGAATCCGGAAGATCTTCATCTGAGTGCTGCTGAAAAGAAGCTTATTCATGCTTACAATGAAAAACCAGTTCTTTCACGTCCTCAGCACAGTTTTTTCAAGGGTCCAAATTATTTTGAGATTGATTTGGACGTGCATCGTTTCAGTTATATTGCAAGAAAGGGGATTGAAGCATTTCAGGATCGATTAAAATTCTGCATCCTGGATATTTGTCTGACAATTCAGGGGAACAAACCTGAAGAATTGCCAGAACAAGTTCTCTGTTGCCTGAGATTGAACAGGATTGATGTTACAAATTATAAGCAATTACTTACCACCTTACCTCATGTTTAAGTACGAGGAAAGGACTGATTCAACTGTTTTATAATACGTCCAGATGTCTTCATTAAGAGCAGGAATCTGCTCATGTTTGAGAGACCTGATAGTGGAATCTGTTAGCCTGAAGATAATGTACCACGTGAAAAGCTTTAACTGTCTTCTTCATGTTGACGGTTACAACACAGCCTGCAAGTTGGCCATGGTTATTCTGAATTTCAACTTCAAAGCCTTCCCATTTGTTCTTCTGGCGTTGACAGAAATTTGTATGGGGTTTAAAGTTCATACCATTTTCATTTTGTAATAGAACATATGGTTCCAGAGGATATCTTTCCAATATATAATATTATGACGAGTTTTCCTTTGGTCACAGTGGGTAGTCATCACCACCTTGATGCATTAGTAAAAGCTACTCCAAGTTACTACATGTTTTCTTTAGTCATCTTCACGGATTAGTAAAAACTACTCCAAGTTACTATGTGTTTTCTTTAGTCATAAATTAAATTATCATACCATTTCATGCAGAATGTTACTGCATATTGAATCAGAATCAATGAGGGAAAGTGACAATGAGGTAATCTTTCGACTTGTGTCGTAAGTGTTTTAGCACATGTAATGTATATTGATTTATTTATTTAACTGTCTACATCACAATAGACCGTTTTCCAC

Ace file of the UniGene sp_v1.1_unigene324

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF1336 domain containing protein	-	-	41%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	52%
Blast2go	protein	-	-	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF1336	IPR009769	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9HU78

Fln msg: your sequence is longer than subject: 582 - 551

Fln protein: MGCCVSIPHKRHRICRKFCWPKSGKSQQIPVTATNPLPHVGANKVACSKPKKSARAKAKAAARNIGATQVQRPHAPSDFHGSNDEAWFDSAASLGSDCDEDFLSVQGDFLPSAGNTLSYADSSQGTPRTSVESIKDRLFKHDGCSENSPTLTSSEKMSKLGEVLSEKFPNQDNNVGCEANGLHGQKNVDEAGNTSDVLVSSNGNKNGKTKVSEAPQSNSNALIEGTDDSECEEEGVLDHCGKHLNKSCLPRLMIPNVSFTEKKRPLSPGPPSFRKKTSLLKLSFKRKSTDGHENANIFSSTQFLERPIAGSQVPYCPAEKAMPGCWSFIEPSTFKLRSESFFRDKKKDSTSNHAAFYPFGVDVFVCPKKIDHIAQYVELPTFDSNDGLPSLLIVNIQMPLYPAAIFLGESDGEGMSVVMYFKLSEGYAKQVAAHFQDSIRRFIDDEVEKVKGFALDSLVHFRERLKLIGRVVNPEDLHLSAAEKKLIHAYNEKPVLSRPQHSFFKGPNYFEIDLDVHRFSYIARKGIEAFQDRLKFCILDICLTIQGNKPEELPEQVLCCLRLNRIDVTNYKQLLTTLPHV*

Protein Length: 583

Fln nts: ATGGGGGCACTGCGATGTATGCCGCTGAGGGTGCAAACAGCGATGGGTTGTGCCTAAAATTCGACATCTGCTATGTGGAATTTAACCGATGAGGGTTTGCATTTTCTGTTTACGGCATTGTGCCGTGAAATTTTGATGCCTCTCGGTGGACTTTCGGTGGGGCATCCACAGATTATACGGTTCTATTGATTTCTTTTCAGAGAATTCTGCATTGCAAAGGCCGGAGTGATTTTCTTTGGTTTCATTTGAGGCTCTATGTGTTGGAACCGCCATTTCAAATGAAAACGAGGTGCTGAAATTTTGGCAAAGTATATCTATATATCCTTTCTTTTGGAGAGTGAAATCAAAATGTGGTAATTGACTGCAATATTTTGACCAGAAGCTGAGCAGGAAAAAATCACAGAAG_-_ATGGGGTGTTGTGTTTCAATTCCACACAAAAGGCATAGAATTTGTAGGAAGTTTTGTTGGCCAAAATCTGGAAAGAGTCAACAGATTCCGGTTACTGCTACAAATCCTTTACCACATGTTGGTGCTAATAAGGTTGCATGCTCAAAGCCAAAAAAGAGTGCACGTGCTAAAGCTAAGGCTGCGGCTCGAAATATTGGAGCAACTCAGGTTCAACGGCCACATGCCCCCTCTGATTTTCATGGAAGCAATGATGAAGCATGGTTTGATTCTGCAGCTTCTTTAGGGTCAGACTGTGATGAAGATTTCTTAAGTGTTCAAGGAGACTTTTTGCCTTCAGCAGGGAACACCTTGAGTTATGCAGACAGTTCTCAAGGAACACCTCGGACCAGTGTGGAATCTATTAAAGATAGACTATTTAAGCATGATGGCTGCAGTGAGAATTCTCCGACTTTGACCTCCAGTGAAAAAATGAGTAAATTAGGAGAGGTTTTGAGTGAAAAGTTCCCAAATCAAGACAATAATGTTGGTTGTGAAGCAAATGGACTTCATGGGCAAAAGAATGTTGATGAAGCAGGAAATACCAGTGATGTCCTTGTTTCATCAAATGGAAACAAAAATGGGAAAACCAAGGTGTCAGAAGCCCCTCAAAGCAACTCCAATGCTTTGATAGAAGGAACAGATGATTCAGAATGTGAGGAAGAAGGGGTACTTGACCATTGTGGGAAGCATTTGAACAAATCTTGTTTACCTCGATTGATGATTCCGAATGTCAGCTTCACTGAAAAGAAAAGACCATTAAGCCCTGGTCCACCATCTTTTAGAAAGAAGACATCATTGCTCAAGCTATCTTTCAAGCGCAAATCAACAGATGGACATGAGAACGCTAATATCTTTTCTTCAACACAGTTTCTAGAGAGACCTATAGCAGGGTCTCAGGTACCATATTGTCCAGCTGAAAAGGCAATGCCAGGATGTTGGTCTTTTATTGAACCTTCTACATTCAAGCTTCGCAGTGAAAGTTTTTTTAGGGACAAGAAAAAGGATTCCACATCAAATCATGCTGCATTTTACCCATTTGGTGTAGATGTTTTTGTATGTCCAAAAAAAATAGATCATATTGCTCAATATGTGGAACTTCCTACCTTTGACTCAAATGATGGATTGCCATCTCTATTGATTGTAAATATTCAGATGCCATTATATCCAGCAGCAATTTTCCTGGGAGAAAGTGATGGGGAAGGGATGAGTGTTGTAATGTATTTTAAGCTTTCTGAAGGCTATGCTAAACAGGTCGCTGCTCATTTCCAAGATAGCATCCGGCGATTTATTGATGATGAAGTTGAGAAAGTAAAAGGCTTTGCTCTAGATTCTCTGGTGCATTTCAGAGAAAGGTTGAAACTCATAGGCCGAGTGGTGAATCCGGAAGATCTTCATCTGAGTGCTGCTGAAAAGAAGCTTATTCATGCTTACAATGAAAAACCAGTTCTTTCACGTCCTCAGCACAGTTTTTTCAAGGGTCCAAATTATTTTGAGATTGATTTGGACGTGCATCGTTTCAGTTATATTGCAAGAAAGGGGATTGAAGCATTTCAGGATCGATTAAAATTCTGCATCCTGGATATTTGTCTGACAATTCAGGGGAACAAACCTGAAGAATTGCCAGAACAAGTTCTCTGTTGCCTGAGATTGAACAGGATTGATGTTACAAATTATAAGCAATTACTTACCACCTTACCTCATGTTTAA___GTACGAGGAAAGGACTGATTCAACTGTTTTATAATACGTCCAGATGTCTTCATTAAGAGCAGGAATCTGCTCATGTTTGAGAGACCTGATAGTGGAATCTGTTAGCCTGAAGATAATGTACCACGTGAAAAGCTTTAACTGTCTTCTTCATGTTGACGGTTACAACACAGCCTGCAAGTTGGCCATGGTTATTCTGAATTTCAACTTCAAAGCCTTCCCATTTGTTCTTCTGGCGTTGACAGAAATTTGTATGGGGTTTAAAGTTCATACCATTTTCATTTTGTAATAGAACATATGGTTCCAGAGGATATCTTTCCAATATATAATATTATGACGAGTTTTCCTTTGGTCACAGTGGGTAGTCATCACCACCTTGATGCATTAGTAAAAGCTACTCCAAGTTACTACATGTTTTCTTTAGTCATCTTCACGGATTAGTAAAAACTACTCCAAGTTACTATGTGTTTTCTTTAGTCATAAATTAAATTATCATACCATTTCATGCAGAATGTTACTGCATATTGAATCAGAATCAATGAGGGAAAGTGACAATGAGGTAATCTTTCGACTTGTGTCGTAAGTGTTTTAGCACATGTAATGTATATTGATTTATTTATTTAACTGTCTACATCACAATAGACCGTTTTCCAC

Fln Alignment:

sp_v1.1_unigene324___HAPS----DFHGSNDEAWFDSAASLGSDCDEDFLSVQGDFLPSAGNTLSYADSSQGTPRTSVESIKDRLFKHDGCSENSPTLTSSEKMSKLGEVLSEKFPNQDNNVGCEANGLHGQKNVDEAGNTSDVLVSSNGNKNGKTKVSEAPQSNSNALIEGTDDSECEEEGVLDHCGKHLNKSCLPRLMIPNVSFTEKKRPLSPGPPSFRKKTSLLKLSFKRKSTDGHENANIFSSTQFLERPIAGSQVPYCPAEKAMPGCWSFIEPSTFKLRSESFFRDKKKDSTSNHAAFYPFGVDVFVCPKKIDHIAQYVELPTFDSNDGLPSLLIVNIQMPLYPAAIFLGESDGEGMSVVMYFKLSEGYAKQVAAHFQDSIRRFIDDEVEKVKGFALDSLVHFRERLKLIGRVVNPEDLHLSAAEKKLIHAYNEKPVLSRPQHSFFKGPNYFEIDLDVHRFSYIARKGIEAFQDRLKFCILDICLTIQGNKPEELPEQVLCCLRLNRIDVTNYKQL
B9HU78_____________HLPSFTNPTFQGSKEEAWFDSAAILESDCDEDFESVPDDIL-----SLNVFD---GVSLSSTAS--GRVANHGDCNVNMQHSSFTDQMQKAGDLSAGNSTHDSVSEATEQTNIH-VFNLDHVDSVSKSDGPSNEVKQ-PVFLDEITSADENA----------GEEGLLDNCGI-LPGNCLPCLA-STVPPVEKRRSLSSSPPSARKKGAL-KLPFKWK--EGNSSNTLFSSKMILHRPIAGSQVPFCPMEKKMLDCWSHIEPCSFKVRGQSYFRDKKKEFAPNCSAYYPFGVDVFLSPRKVDHIARFVDLPIINSAGNFPTILVVNVQVPLYPAAIFQSESDGEGTNFVLYFKLSDSYSKELPTHFQESIRRLIDDEVEKVKGFPVDTIASFRERLKILGRVVNVEDLHLSAAERKLMQAYNEKPVLSRPQHEFYLGDNYFEIDIDMHRFSYISRKGFQAFLDRLKICVLDIGLTIQGNKVEELPEQILCCIRLNGIDYMKYHQL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1593	60		40		1.0
1764	75		25		0.996473
2271			87	12	0.992554
2272	87		12		0.992554
2273			12	87	0.992554
2274	87		12		0.992554
2336	90			10	0.90298
2338			10	90	0.90298
2339			10	90	0.90298
2384		30		70	1.0
2420	83	16			0.999991
2422		16	83		0.999991
2494		68		31	1.0
2506			3	88	0.999079

SSRs (tot: 1)

Start position	End position	Sequence	Length
2760	2772	ATTT ATTT ATTT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain