SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene315

Length: 1822 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene315

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	zfwd1 (zinc finger wd40 repeat protein 1) nucleic acid binding zinc ion binding	-	-	69%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, CCCH-type	IPR000571	-	69%
Blast2go	WD40 repeat	IPR001680	-	69%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	69%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	69%
Blast2go	WD40-repeat-containing domain	IPR017986	-	69%
Blast2go	WD40 repeat, conserved site	IPR019775	-	69%
Blast2go	WD40 repeat, subgroup	IPR019781	-	69%
Blast2go	WD40 repeat 2	IPR019782	-	69%
Blast2go	G-protein beta WD-40 repeat	IPR020472	-	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPG9

Fln msg:

Fln protein: MQAAGPPGGSRRNISARWGRGRGGIFISDERQKIRNKVCNFWLAGNCQRGEECKYLHSFVMGSDVKFLTQLSGHVKAIRGIAFPSDSGKLYSGGQDKKVIVWDCQTGQGRDIPLNDEVGCLISEGPWIFVGLPNAVKVWNILTSTELSLVGPRGQVHALAVGNGMLFAGTHDGSILAWKFSPASNTFEPAASLVGHTQAVVSLVSGADRLYSGSMDKTIRVWDLGTFQCLQTLRDHTSVVMSLLCWDQFLLSCSLDNTVKVWVATSSGALEVTYTHNEEHGVLALCGMNDEQAKPVLLCSCNDNTVRLYDLPSFSERGRIFSRNEVRTFQIAPGGLFFTGDATGELKVWNWATQTS*

Protein Length: 358

Fln nts: TATGCGTGTTTTGGCAGGAAGGCAGATGCACTAGAGAATCATGCAATTTTCTGCATGTCGACGAACCTGGGTCAGTCAAAAGGGGGGGAGCAACTAATGGGTTTGCTCCAAAGAGATCATATAACGGATCGGATGAGAGGGAC_-_ATGCAGGCAGCAGGACCTCCCGGAGGATCGAGAAGGAATATTTCTGCTAGATGGGGAAGAGGACGAGGTGGTATATTCATATCCGACGAGAGGCAGAAGATTCGCAATAAAGTATGCAATTTCTGGCTTGCAGGCAATTGCCAGCGTGGAGAGGAATGCAAATATTTACACTCCTTTGTTATGGGTTCGGACGTGAAGTTCTTGACGCAGCTGTCCGGCCACGTTAAGGCTATCCGAGGGATTGCTTTTCCTTCTGATTCTGGTAAACTCTATTCTGGAGGCCAAGACAAGAAGGTTATAGTGTGGGACTGTCAAACAGGGCAGGGTAGAGACATCCCATTAAATGACGAGGTTGGATGCCTCATAAGTGAAGGCCCATGGATTTTTGTTGGCCTCCCAAATGCAGTCAAGGTTTGGAATATTTTGACCTCAACAGAACTAAGTTTAGTTGGTCCCAGGGGACAAGTACATGCCCTGGCTGTTGGTAATGGAATGCTTTTTGCTGGAACACATGATGGCAGTATATTGGCTTGGAAGTTTAGTCCTGCTTCCAATACCTTTGAGCCTGCAGCTTCCCTTGTAGGGCATACCCAAGCTGTTGTTTCATTAGTCTCAGGAGCAGACAGACTTTACTCTGGTTCCATGGACAAGACAATAAGAGTTTGGGATTTGGGAACTTTTCAATGTCTACAGACCCTGAGAGATCACACGTCAGTTGTAATGTCTCTTTTATGCTGGGATCAGTTTCTGTTGTCATGCTCTTTAGACAATACAGTGAAGGTCTGGGTTGCTACATCAAGTGGAGCCCTTGAAGTGACATATACTCATAATGAAGAACATGGTGTTCTTGCGCTTTGTGGAATGAACGATGAACAAGCCAAGCCTGTTTTGCTTTGTTCTTGCAATGATAACACTGTGCGTCTTTATGACCTGCCATCGTTCAGCGAACGAGGTAGAATATTCTCGAGAAACGAGGTACGAACATTCCAGATTGCACCTGGTGGATTATTTTTCACCGGTGATGCAACAGGTGAACTTAAAGTTTGGAACTGGGCAACCCAGACATCCTGA___TGCAACTTAAAAAATTCCTGTTGCAATCAGGGCACTCTGCTCGAAATGCAAATCTCTCTGGGAACTCCTTCACATGGCAGAAAGGTGCAGAGTCTGGAGAAGTTGAAATTTCACGTCCTGTATACTCACTCAAGCAACTCTAGTATGAAGAGCTAAAGTATATCAAAGATATATAAGTGGGTAATATTAACACTGAATAGCTGCGAGTGATGCATGCTTGATTTCCGTTAAGGAAATCAGAATTTTAAACTTTTATAGAGTAAACGACTATCAATATTTCTATTTAATTCTCCCTGCTGCATATAACGCCAAACATCAGCACTATTTCCAGCGCTACTCATCCTAGTGCTCCAGGATGAGCACACTTCTATGTTGAGGTTTGTTTGATACATGCTTTTCATTTAGATATGCTGTCCGAATTGGAGAACAAAGAGAGATTGATGTTTGTGAAAATATGCACTTGGGTTTGTGTATTCCCACTATACTGGATTCTCACTGGTATTTACTGCAAGAGCAAATAATCAAATTTGCCCGAAGCAAACATTTTCTTGAGAAATTTGTAAATTTTTCAGTCCGTTGTTATTAATATATTTAACTGTTTTCCGAAT

Fln Alignment:

sp_v1.1_unigene315___QKIRNKVCNFWLAGNCQR-GEECKYLHSFVMG-SDVKFLTQLSGHV-KAIRGIAFPSDSG--KLYSGGQDKKVIVWDCQTGQGRDIPLN-DEVGCLISEGPWIFVGLPNAVKVWNILTSTELSLVGPRGQVHALAVGNGMLFAGTHDGSILAWKFSPASNTFEPAASLVGHTQAVVSLVSGADRLYSGSMDKTIRVWDLGTFQCLQTLRDHTSVVMSLLCWDQFLLSCSLDNTVKVWVATSSGALEVTYTHNEEHGVLALCGMNDEQAKPVLLCSCNDNTVRLYDLPS
B8LPG9_____________KNIRDKACPYWLAGNCKHAGDDCKYLHSHVIGGSDVTFLTKLVGHDNKPIRGIAFPSHSGTGRLCSAGDDNKLIIWDCQTGQGTDMPLNGEEIGCLLSEGPWLFAGLPNAVRAWNTLTLTELTLDGPRGQVHTLAVASGMLLAGTHDGSILAWKFNAASNTFEPAASLAGHTRRVVSLASGADRLYSGSMDHTIRVWDLETFQCIQTLRDHTSVVMSLLLWDQFLLSCSLDNTVKVWAATSSGALEVTYTHNEQHGVLALCGMNDDQAKPLLLCSCNDNSVRLYDLPS

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
624	14		85		0.993533
626			14	85	0.993533
627	14		85		0.993533
629			14	85	0.993533
955	85	14			0.993533
956	85			14	0.993533
959		14	85		0.993533
962	85	14			0.993533
963	14			85	0.993533
1333		81	18		0.999994
1336	18			81	0.999994
1337	80	20			0.999996
1339	80		20		0.999996
1797	85	14			0.993533
1798			14	85	0.993533
1799		16		83	0.994512
1801	83		16		0.994512
1803	83		16		0.994512
1806			16	83	0.994512
1808			25	75	0.996473
1810	75	25			0.996473
1811	33	66			0.997452
1814		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain