SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene308

Length: 1441 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene308

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribonuclease n=1 Tax=Picea sitchensis RepID=D5AEE7_PICSI	-	-	88%
FL-Next	sp=Ribonuclease; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	ribonuclease large subunit	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Blast2go	Ribonuclease HII/HIII	IPR001352	-	79%
Blast2go	Ribonuclease H2, subunit A	IPR004649	-	79%
Blast2go	Ribonuclease H-like domain	IPR012337	-	79%
Blast2go	Ribonuclease HII, helix-loop-helix cap domain	IPR023160	-	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEE7

Fln msg:

Fln protein: MGSNPLPDWASKPCVMGIDEAGRGPVLGPMVYGCLYCSASYQNTLATLKFADSKTLKEEKREELFETLKGDASLGWAVDIIDPRELSAKMLRRIKVNLNTISHDAAMGLVNRVLAMGVLLSEVYVDTVGDADKYRIKLEEKFPGIKFVVSKKADSLYPIVSGASIVAKVTRDNALRGWVLDETAEGISRNFGSGYPGDPETKAWLEENKHPVFGFPTLVRFSWATCNSYTEKGVTVIWEPDEDDKEKASNEGNNKKQQTLNFPSLKRKSEELESSGKGRFKFFSARKLQQVNGCL*

Protein Length: 297

Fln nts: GGCGGTTAATTTGGTTGACAATGTGGGGATTTTGGCGGGCAATTTGCTTCAGAAACATAGACCTTGGAAGTAAGCTACTAATGAAAAGTGGACTAAGAGGGAGAAGAGGAGGGTGTAGTTTGGAAGAGAAGTG_-_ATGGGTTCGAATCCTCTCCCTGACTGGGCCAGCAAGCCCTGCGTAATGGGCATCGACGAAGCTGGCAGAGGCCCTGTTTTAGGTCCCATGGTGTATGGATGCTTATATTGTTCAGCTTCTTACCAGAATACCCTTGCTACATTGAAGTTTGCAGATTCAAAGACTCTAAAGGAGGAGAAACGAGAAGAATTGTTTGAAACCCTTAAAGGTGATGCGTCTTTGGGTTGGGCTGTTGATATCATTGATCCAAGGGAGCTTTCTGCAAAAATGCTTCGGAGAATAAAAGTCAACCTGAATACAATTTCACATGATGCTGCCATGGGCCTTGTCAATAGGGTTCTTGCCATGGGGGTTTTACTCTCGGAGGTTTATGTTGATACTGTCGGAGATGCAGATAAGTACAGAATTAAACTAGAAGAAAAATTTCCTGGCATTAAATTTGTAGTTTCTAAGAAAGCTGATAGCCTTTATCCAATTGTCAGTGGAGCAAGCATTGTCGCCAAGGTGACCAGAGATAATGCTTTGCGGGGCTGGGTATTGGATGAGACTGCTGAGGGCATAAGCAGAAACTTTGGCTCAGGATATCCAGGGGATCCTGAAACAAAAGCCTGGCTGGAAGAAAATAAACATCCAGTATTTGGTTTTCCAACATTGGTACGATTCAGTTGGGCAACTTGCAACAGTTATACCGAAAAGGGTGTTACAGTGATCTGGGAACCAGATGAAGACGACAAAGAGAAAGCAAGTAATGAAGGAAATAACAAAAAGCAACAAACATTAAACTTTCCTTCTCTAAAACGAAAGTCAGAAGAACTAGAATCCAGTGGTAAAGGCCGTTTTAAATTTTTTTCTGCTAGAAAACTTCAGCAGGTCAATGGCTGTTTGTAA___AATATTTCAATCGATATGGAAGTCTTTTGCAAGCCTTACCAATGTTGTTTATCTTCTATTCTAATTATGACAAACATTGTTAGGACATAACTGTCACAAGATGAAACAATATCTGTCGTTGATCTATTAATAGTAACTCTTTTTATCGAATGGGTATCCTTGACATGGGGCATTGAGCTTTTCAGTGTTCTGATTTGAAACAAGTCAGCATGCGGTTTGTCCTTGATCATCAGAGAAGATAATAGCAAATATTTCCTAAGTGGTAATGACTATTGATTTGTGATAATTTTAATGGAGGAACGTTCTATTCACATCAATAGAAGGGCATAGTATTTCAAAGAACTGAAGAGAGTTGTGGGTTTGGAATAATGTGTTAATGAAAGTTTATCCTCAAATCCAGGAGGTTAATTTGCAAGTAAC

Fln Alignment:

sp_v1.1_unigene308___MGSNPLPDWASKPCVMGIDEAGRGPVLGPMVYGCLYCSASYQNTLATLKFADSKTLKEEKREELFETLKGDASLGWAVDIIDPRELSAKMLRRIKVNLNTISHDAAMGLVNRVLAMGVLLSEVYVDTVGDADKYRIKLEEKFPGIKFVVSKKADSLYPIVSGASIVAKVTRDNALRGWVLDETAEGISRNFGSGYPGDPETKAWLEENKHPVFGFPTLVRFSWATCNSYTEKGVTVIWEPDEDDKEKASNEGNNKKQQTLNFPXXXXXXXXXXXXXXXXFKFFSARKLQQVNGCL
D5AEE7_____________MGSNPLPDWASEPCIMGIDEAGRGPVLGPMVYGCLYCSASYQETLATLKFADSKTLKEEKREELFESLKADASLGWAVDIIDPRELSAKMLQRIKVNLNTISHDAAMGLVNTVLSKGILLSEVYVDTVGDADKYRIKLEEKFPGIKFVVSKKADSLYPIVSGASIVAKVTRDNALRGWVLDETAEGISRNFGSGYPGDPETKAWLEENKHPVFGFPTLVRFSWATCNSYTAKGVTVIWEPDEED--KASNGGDNKKQLTLNFPTVKRKSEELESSGKGRFKFFSSRKLQQVNGCL

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
925		25		75	0.996473
993	87	12			0.992554
995	87			12	0.992554
996	87		12		0.992554
998	87	12			0.992554
1003	87		12		0.992554
1007			87	12	0.992554
1012	87	12			0.992554
1015		12	87		0.992554
1016	12	87			0.992554
1046	85		14		0.993533
1061			11	88	0.923564
1063	88	11			0.923564
1064		88	11		0.923564
1065		88		11	0.923564
1066	88		11		0.923564
1068		11		88	0.923564
1069		11	88		0.923564
1073			11	88	0.923564
1074		11		88	0.923564
1076	88		11		0.923564
1079		11		88	0.923564
1104		10	90		0.90298
1133	90		10		0.90298
1143			90	10	0.90298
1180		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain