SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene307

Length: 1160 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene307

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Exosome complex exonuclease rrp43, putative n=1 Tax=Ricinus communis RepID=B9T1F1_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	77%

Source	InterPros	Term	Type	Identity
Blast2go	Exoribonuclease, phosphorolytic domain 1	IPR001247	-	77%
Blast2go	Exoribonuclease, phosphorolytic domain 2	IPR015847	-	77%
Blast2go	Ribosomal protein S5 domain 2-type fold	IPR020568	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAB6

Fln msg:

Fln protein: MTSQAALAGEIEVEAFRRLYPLQFYERHLNDNVRPDARPLGRARATSLALGTVPTADGSAMAKIGHTTMLAGVKLEVMTPATDAPDEGRIAVDFQMPPICSPDVRPGRPVDTAAVISEQLFSVLASSGVINLKELSISKGQAAWMAYLDIYCLDADGALFDAALLAAIGAFAHLRFPAVSMTEEGKVIPLSGDTVLEDGNKEQPKVQEQRQQLTLGKIPFSLTCMLHKKYILADPTAEEEKIFQTTITVVLDPSGRLVSFYKPGGSALASTSTIQDCMALTRYRVKELQKILDEALSEMEPV*

Protein Length: 304

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTAAATGCCCAAAGTCTCAAGGCAGGAGCTCAGCAATAAAATACCGTGGAGGAAAGACGGTCTTCAGAGCTGTTGTTGTGTGAAGGTCCGCAACAGAGTAGAGTGGAGTTGAGTGTAAT_-_ATGACATCCCAAGCAGCTTTGGCTGGAGAAATAGAGGTGGAGGCGTTCAGAAGGCTTTATCCCCTGCAGTTCTATGAGCGTCACCTCAATGACAATGTCCGTCCCGATGCCAGACCTCTTGGACGAGCAAGAGCCACCTCACTTGCTCTAGGGACAGTGCCCACTGCAGATGGCTCAGCCATGGCAAAGATTGGCCACACTACCATGTTGGCTGGAGTGAAATTGGAAGTAATGACGCCTGCTACAGACGCTCCGGATGAAGGGCGCATTGCTGTCGACTTTCAAATGCCACCCATTTGTTCTCCGGATGTTCGGCCTGGCAGACCTGTAGATACAGCAGCTGTGATTTCTGAGCAGTTGTTTAGCGTCCTTGCGAGTTCTGGGGTTATCAACTTAAAGGAACTATCAATATCAAAGGGACAAGCAGCTTGGATGGCATACTTGGATATATACTGTCTCGATGCCGATGGTGCTCTGTTTGATGCTGCTTTGCTTGCAGCTATTGGTGCCTTTGCACACTTGCGGTTTCCAGCTGTTTCTATGACAGAAGAAGGAAAAGTGATTCCCTTGTCTGGAGATACTGTTCTGGAAGATGGAAACAAAGAACAACCTAAAGTTCAAGAACAAAGGCAGCAGCTGACACTAGGGAAAATTCCGTTTTCTTTGACATGCATGTTGCACAAGAAATATATATTAGCAGATCCTACAGCTGAAGAAGAAAAGATTTTCCAGACAACTATCACTGTTGTGCTTGATCCTTCTGGACGCCTTGTTTCCTTTTATAAGCCTGGTGGTTCTGCTCTTGCATCCACTTCCACTATACAGGATTGCATGGCACTCACAAGGTATAGGGTCAAAGAATTACAGAAAATTTTGGATGAAGCACTTTCAGAGATGGAACCTGTCTGA___ACATTTGATTCAATGATCACATTGCTGAAATCTGCGCAAATGGTTGGTTGTAAATGGTGGTGCTTTTTCATAACCACAGTGAGATGATTTGGTGTTTTAAACCTA

Fln Alignment:

sp_v1.1_unigene307___MTSQAALAGEIEVEAFRRLYPLQFYERHLNDNVRPDARPLGRARATSLALGTVPTADGSAMAKIGHTTMLAGVKLEVMTPATDAPDEGRIAVDFQMPPICSPDVRPGRPVDTAAVISEQLFSVLASSGVINLKELSISKGQAAWMAYLDIYCXXXXXXXXXXXXXXXXXXXXHLRFPAVSMTEEGKVIPLSGDTVLEDGNKEQPKVQEQRQQLTLGKIPFSLTCMLHKKYILADPTAEEEKIFQTTITVVLDPSGRLVSFYKPGGSALASTSTIQDCMALTRYRVKELQKILDEALSEMEPV
D5AAB6_____________MASQAALAGEIEVEAFRRLYPLQFYERHLNDNVRPDARPLGRARATSLALGTVPTADGSAMAKIGHTTMLAGVKLEVMTPAAEALDEGRIAVDFQMPPICSPDVRPGRPVDAAAVISEQLSNVLASSGVINLKELSISKGQAAWMAYLDIYCLDADGALFDAALLAAIGAFAHLRFPAVSMTEEGKVIPLSGDTVLEDGNKEQPKVQEQRQQLTLGKVPFSLTCMLYKKHILADPTAEEESVFQTTITVVLDPSGRLVSFYKPGGSALASTSTIQDCVALTKYRVKELQKILDEALSEMESV

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
513		80		20	0.995493
588		85		14	0.993533
589			14	85	0.993533
590			14	85	0.993533
606		57		42	1.0
645	66		33		1.0
695	88		11		0.923564
703	90		10		0.90298
704	90		10		0.90298
705	90		10		0.90298
738	88			11	0.923564
740	88		11		0.923564
741			11	88	0.923564
880	90			10	0.90298
924	21	78			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain