SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene301

Length: 1469 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene301

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF760 domain containing protein	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF760	IPR008479	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD62

Fln msg:

Fln protein: MFLVGKMQGAGVVGTLNPACSFCTTTASGTVSNVRSIPSHGLMFGFCKGSLKGCPLVLTHRGRPIYGEVFNTGKRNLCARADANQEKISSRIAPLELESPTGQFLSQILKSHPHLLPAAIDQQLERLAADRDAEAQQEQPSTSSTDLVLYRRIAELKAEERRKALEEIIYALIVQKFMDAGVSLIPTISLSVAGSGKVDTWPNQDTELEAVHSIEAVEMIKEHLSLVLGNRNAVSDSNTVAEISKLRVGQVYAASVMYGYFLRRVDKHFQLEKSMKTLPFFSNEEADAEQLNYTHPELEGGNWQDNSAVQGGAAIAAAVAAMAGAAAPEGQDFNPIVFGQIGAKPCKLRAYVMSFDPETLQRYATMRSKEGVNIIERHAEALFGRPEIRISPDGSMAVTNDEILRISFTGLTSLVLEAVTFGSFLWDVESHVDSRYHFVRK*

Protein Length: 443

Fln nts: GCGCCGATTCAGGGGCCTCCTTGCACCTATCTGCTCGTTCTCCACCGATCCACACCACACCTGAAGGTCGGGATATCTT_-_ATGTTTTTGGTTGGGAAAATGCAAGGTGCGGGCGTTGTTGGAACCCTAAATCCTGCCTGTAGTTTCTGTACAACAACTGCTTCCGGAACGGTTTCGAATGTTCGATCGATTCCTTCACATGGCCTCATGTTTGGTTTCTGCAAGGGATCCTTGAAGGGTTGTCCTTTGGTTTTAACTCACAGAGGAAGGCCAATATATGGAGAAGTTTTTAACACTGGGAAAAGAAATTTGTGTGCTAGAGCTGATGCAAACCAAGAAAAAATCTCTAGTCGTATTGCTCCCCTTGAGTTGGAATCTCCAACTGGTCAATTTTTGTCTCAGATTCTGAAGAGTCATCCTCATCTTCTCCCTGCTGCAATTGATCAGCAGCTAGAGAGGCTTGCCGCTGATCGGGATGCTGAGGCCCAGCAGGAGCAGCCCTCAACAAGCAGCACAGATCTTGTATTATACAGGAGAATTGCGGAATTGAAAGCTGAGGAGAGACGTAAGGCGTTAGAAGAAATCATCTATGCTCTTATTGTTCAGAAATTCATGGATGCTGGTGTTTCACTAATCCCAACAATTTCACTGTCTGTTGCTGGTTCTGGGAAGGTAGATACGTGGCCAAATCAGGACACAGAACTTGAAGCGGTCCATTCTATAGAGGCTGTTGAGATGATAAAGGAGCATCTGTCTCTTGTTCTGGGAAATCGCAATGCAGTGTCAGACTCAAATACTGTTGCTGAAATTAGTAAGTTGCGAGTGGGGCAAGTCTATGCAGCATCCGTCATGTATGGATACTTCTTGAGAAGAGTTGACAAACACTTCCAACTAGAGAAAAGCATGAAGACGCTTCCTTTCTTCTCAAATGAAGAAGCTGACGCTGAGCAGTTGAATTACACCCACCCAGAATTAGAAGGTGGAAATTGGCAAGATAACTCAGCTGTACAAGGTGGTGCGGCAATTGCGGCAGCTGTTGCTGCAATGGCTGGTGCAGCAGCTCCTGAAGGTCAAGATTTCAATCCTATAGTTTTTGGTCAGATAGGGGCTAAACCATGTAAGTTGAGGGCTTATGTTATGTCCTTTGATCCAGAGACCTTGCAGAGGTATGCTACAATGAGGTCCAAAGAGGGAGTGAATATTATTGAGAGGCATGCAGAGGCTCTGTTTGGGAGGCCTGAAATTCGTATCTCCCCTGATGGGTCAATGGCAGTTACAAACGACGAGATATTAAGGATAAGTTTCACAGGTTTGACCAGTTTGGTTTTGGAAGCTGTCACCTTTGGGAGCTTCCTGTGGGATGTTGAGAGTCATGTTGATTCAAGGTATCACTTTGTTAGAAAGTAG___TTTGAACAATCACGGTGATACTACGTGTGTAGTCCATGGCTTCTGTTGATATATTAGCTGTGAA

Fln Alignment:

sp_v1.1_unigene301___MQGAGVVGTLNPACSFCTTTASGTVSNVRSIPSHGLMFGFCKGSLKGCPLVLTHRGRPIYGEVFNTGKRNLCARADANQEKISSRIAPLELESPTGQFLSQILKSHPHLLPAAIDQQXXXXXXXXXXXXXXXXPSTSSTDLVLYRRIAELKAEERRKALEEIIYALIVQKFMDAGVSLIPTISLSVAGSGKVDTWPNQDTELEAVHSIEAVEMIKEHLSLVLGNRNAVSDSNTVAEISKLRVGQVYAASVMYGYFLRRVDKHFQLEKSMKTLPFFSNEEADAEQLNYTHPELEGGNWQDNSXXXXXXXXXXXXXXXXXXXXPEGQDFNPIVFGQIGAKPCKLRAYVMSFDPETLQRYATMRSKEGVNIIERHAEALFGRPEIRISPDGSMAVTNDEILRISFTGLTSLVLEAVTFGSFLWDVESHVDSRYHFVRK
D5AD62_____________MQGAGVVGTLKPACSLSTTTASGTISNARSIPSYGLMFGFCKGSLKGCPLVLTHRGRPIYGAVFNTGKRNVFARADANQEKISSHIAPLDFESPIGQFLSQILKNHPHLLPAAIDQQLERLAADRDAASQHEQPSTSSTDLVLYRRIAELKAEERRKALEEIIYTLIVQKFMDAGVSLIPTISLPAAGSGKVDTWPNQDTELEAVHSIEAVEMIKEHLSLVLGNRNAGSDSNTVAEISKLRVGQVYAASVMYGYFLRRVDKHFQLEKSMKMLPFASNEEIDAEQLNSTHPELEGVNWQDNSAVQGGAAIAAAVAAMAGAAGPAGQDFNPIVFGQIGAKPCKLRAYVMSFDPETLQRYATMRSKEGVNIIERHAEALFGRPEIHITPDGSMAVTKDEILRISFTGLTSMVLEAVTFGSFLWDVESHVDSRYHFVRK

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
146	20			80	0.995493
174		80		20	0.995493
178		16		83	0.994512
197		33		66	1.0
282	25	75			1.0
358		10		90	0.90298
380	90		10		0.90298
590	20		80		0.999996
709			20	80	0.995493
967	85		14		0.993533
968	14		85		0.993533
1250	33			66	1.0
1286	90		10		0.90298
1339		75	8	16	0.99999
1340		16		83	0.999991
1341	16			83	0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain