SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene294

Length: 1870 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene294

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to glyoxal oxidase	-	-	47%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	46%
Blast2go	protein	-	-	60%

Source	InterPros	Term	Type	Identity
Blast2go	Glyoxal oxidase, N-terminal	IPR009880	-	60%
Blast2go	Galactose oxidase/kelch, beta-propeller	IPR011043	-	60%
Blast2go	Immunoglobulin-like fold	IPR013783	-	60%
Blast2go	Immunoglobulin E-set	IPR014756	-	60%
Blast2go	Domain of unknown function DUF1929	IPR015202	-	60%
Blast2go	Galactose oxidase, beta-propeller	IPR015916	-	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9TK29

Fln msg: your sequence is shorter than subject: 518 - 534

Fln protein: GKWELLVEDAGIASMHSAVTRYGTVILLDRQITVNPSGAETTSCVHRVPDSGHCIFPYSAEYDPVSNTMRPLDGILTDPWCSSGQFDPNGTLVQTGGYSHGSHRVRSLQACPPGTQCRWVESGNAQLEDPRWYATNQILPDGRQIVVGGRDAPNFEFVPPRRQGEEPTYLSMLMGQSKNTRDQAYYPFLHLLPDGTVFVLAGTDSVALDLKTNRPTRSFPPIDIPRTYPAGGSSVMLPLLASDGFSAVTILVCGASEPGAYWNKRGYNHPASASCGWIRVMDSHPAWKMEQMPVGRTMGDMVILPDGNVLIVNGAMRGSQGYNKASDPALTPVVYKPLEQRFELQNPTTVARMYHSTANLLPDGRVFVAGSNPHLSYFFSGSFPTEFRLEAFSPEYLNPVHDHLRLEIQRLDQRARYGSEFSVEISGEAALSSYRNNSLEVNLINAPFSTHSFSQGQRFLGLMVTSVSRQYYNNAPITVAQCEAPPKAAVAPPGYYMVFVVSNGIPSSSAQWIQIVP*

Protein Length: 519

Fln nts: GGAAAATGGGAGCTCCTCGTAGAGGACGCGGGCATCGCTTCTATGCACAGTGCCGTGACCCGATACGGCACAGTTATTCTGCTCGACAGACAAATTACAGTAAATCCCAGTGGTGCCGAAACTACTTCTTGTGTCCATAGAGTGCCCGACTCCGGCCATTGCATCTTTCCATATTCCGCCGAATACGACCCCGTCTCCAACACAATGCGCCCGCTGGATGGAATCCTGACGGACCCCTGGTGCTCCTCCGGCCAGTTCGATCCCAACGGCACTCTTGTCCAAACGGGAGGCTACAGCCACGGGTCGCACAGGGTCCGGAGCCTCCAGGCCTGCCCGCCCGGCACACAATGTCGGTGGGTCGAATCCGGCAACGCCCAACTGGAGGATCCGAGATGGTACGCGACGAATCAGATACTGCCCGACGGTAGGCAGATCGTCGTCGGCGGGCGAGACGCTCCAAATTTCGAATTCGTGCCGCCGAGACGACAGGGGGAGGAGCCGACCTACCTGTCTATGCTCATGGGCCAGAGCAAAAATACGAGAGACCAGGCGTACTATCCCTTCCTTCACCTGCTGCCCGACGGCACCGTGTTCGTTCTGGCCGGCACGGATTCCGTTGCGCTTGACCTCAAGACGAATCGCCCCACCAGGTCCTTCCCACCCATCGACATCCCACGAACTTACCCTGCCGGGGGCTCGTCCGTCATGTTACCTCTCCTGGCCTCCGATGGCTTCTCCGCCGTCACCATTCTCGTCTGTGGCGCGTCTGAACCGGGCGCGTATTGGAACAAGCGCGGCTACAACCACCCCGCGTCTGCGAGCTGCGGGTGGATTAGGGTCATGGACAGCCACCCGGCCTGGAAAATGGAGCAAATGCCAGTAGGGAGAACGATGGGCGACATGGTGATTCTCCCCGACGGGAACGTTTTGATCGTCAACGGCGCGATGAGGGGTTCCCAGGGTTACAACAAGGCCTCCGACCCGGCTCTCACCCCAGTCGTCTACAAGCCCCTCGAGCAACGATTCGAATTGCAGAACCCGACCACCGTGGCCCGCATGTACCATTCCACTGCGAATCTGCTCCCGGACGGCCGGGTTTTTGTGGCGGGGAGCAACCCGCACCTCTCATATTTCTTCAGCGGCTCGTTTCCCACCGAGTTTCGCCTGGAGGCCTTCTCGCCCGAGTATCTAAATCCCGTCCACGACCACCTCAGGTTGGAGATTCAGAGACTCGATCAGCGTGCGCGTTACGGATCGGAATTTTCCGTTGAGATTTCTGGCGAGGCCGCGTTATCGTCTTATAGGAATAATTCATTGGAGGTGAATTTGATAAATGCACCCTTCTCCACGCACTCGTTCTCGCAGGGACAGAGATTTCTGGGACTTATGGTCACCTCTGTGAGCCGTCAATATTATAACAATGCACCGATAACGGTCGCCCAGTGTGAAGCTCCTCCCAAGGCAGCGGTGGCGCCTCCCGGTTATTACATGGTTTTTGTGGTTAGCAATGGCATTCCCAGTTCTTCCGCTCAATGGATCCAAATCGTCCCGTAG___CGATAAAAGATCTTTTTGCTTCTGCCTTTCTGATTGTAATCGCCAAGCAAAACAAAGTTCATATGAACAGTTGTGTTGGTAAAATTTAGAACAGCCCAGAATCGTTTAAAATTTAAATCAATTTAATGGAGTTGGTTTTGTGAGGTGTGCGTTTAGTTTGACCGGCACTAACTTTTTAATATTTCCAAATTTGTGTTAATGTGATTTCAAATTTAAGATAAGAAGGGTTTTAACCATGCACCTTAAAACTATCTTATTTATGTTTCCATGACTATATATATATAGTCTTTCTTATAAGATGAATATCTTATTTATG

Fln Alignment:

sp_v1.1_unigene294___GKWELLVEDAGIASMHSAVTRYGTVILLDR------QITVNPSGAETTSCVHRVPDSGHCIFPYSAEYDPVSNTMRPLDGILTDPWCSSGQFDPNGTLVQTGGYSHGSHRVRSLQACPPGTQCRWVESGNAQLEDPRWYATNQILPDGRQIVVGGRDAPNFEFVPPRRQGEEPTYLSMLMGQSKNTRDQAYYPFLHLLPDGTVFVLAGTDSVALDLKTNRPTRSFPPI-DIPRTYPAGGSSVMLPLLASDGFSAVTILVCGASEPGAYWNKRGYNHPASASCGWIRVMDSHPAWKMEQMPVGRTMGDMVILPDGNVLIVNGAMRGSQGYNKASDPALTPVV---YKPLEQRFELQNPTTVARMYHSTANLLPDGRVFVAGSNPHLSYFFSGSFPTEFRLEAFSPEYLNPVHDHLRLEIQRLDQRARYGSEFSVEISGEAALSSYRNNSLEVNLINAPFSTHSFSQGQRFLGLMVTSVSRQYYNNAPITVAQCEAPPKAAVAPPGYYMVFVVSNGIPSSSAQWI
A9TK29_____________GTWELLMENAGIASMHTALTRFGTLVMLDRTNIGASQINLPDGKCRASNDLVLQSDCS----AHSVVFDPATKTVRPLF-LMTDPWCSSGQFMPDGTLMQTGGDFDGLRKIRTFVPCEPSGTCDWVESTTQELQSGRWYSTNQLLPDGRQIVIGGRSAFNLEFIPPNANG--PLYFPFLNATNDDQNDN-LYPYVHLLPNGNLYIFANRDSIEYDYSTDTVVRTFPQIPGEPRNYPSAGSSVILPLLATNNFSVVEVLVCGGAQYGAYLNSIS-QMPCSSTCGRIVVSDPNPTWVMDNMPFPRCMGDMILLPTRDVLIINGAQQGSQGWTNAVNPTFSPVLYYTYASLGYRMVALAPTTIARMYHSTANLMQDGRIFVAGSNPNQFYVFNVEYPTELKLEAFSPPYLAPSHDLQRPTVTVSPLQITYNTLFTITVAFPVPLTS----ELEINLVNAPYSTHSYQQGQRLVGLAVSALVQ--VAQASVYQVTLTAPSTPTVAPPGYYMLFAVNQAIPSKGV-WV

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
411	33		66		0.997452
830		12	87		0.992554
884	10		90		0.90298
1672		11		88	0.923564
1715	87		12		0.992554
1719		12	87		0.992554
1800	66			33	0.997452
1801	66			33	0.997452
1803		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1827	1838	TA TA TA TA TA TA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain