SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene292

Length: 1730 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene292 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Bile acid sodium symporter n=2 Tax=Zea mays RepID=B6TKE8_MAIZE	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	bile acid:sodium symporter family protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	78%
Blast2go	response to wounding	GO:0009611	Biological Process	78%
Blast2go	glucosinolate biosynthetic process	GO:0019761	Biological Process	78%
Blast2go	transporter activity	GO:0005215	Molecular Function	78%
Blast2go	plastid	GO:0009536	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Bile acid:sodium symporter	IPR002657	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX39

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 19 aas, your sequence is shorter than subject: 326 - 433

Fln protein: MVNVLKVLKDANSVIPHVVAASTILALIFPPSFTWFTNRYYAPALGFLMFSVGINSSAKDFIFAIKQPDVIALGYIGQYVIKPLLGLAFGSIAVALLGLPDAIGSGIILTSCVSGAQLSNYATYLTDPTMAPLSIVMTALSTASAVVVTPMLTLLLLGKRLPVDVQGMMSSIMQIVIAPVAAGLLLNKFAPRFCSFVRQLLPPVSVFVTALCVGSPLAMNINTIRSTFGLTILVPVVGFHALAFVIGYVMPGFAFSKSPDMKGLQRTISFETGMQSSLLGLALANKFFQDPLVGVPSAISVVVMSLMGFSLVMLWKEPGSLETNI*

Protein Length: 327

Fln nts: ATGGGACTGCCTAGGGCTGATTTGATCCACTTTGCTGTTATACATCTTAAATTGAAACCCGCGAGAGATCAGCCGGGCATATAGCTCCACGTGGGTTCATTCCATCAGGGCTGGTGGCTTGATTTTGGTTTGAGCTTCACTTCCCGCCATGAATATCCAACAAGCAGCCCCGGGTAGCAGAGCACCATTGGTTCTTCCAAGGGACGATCAGTTTTCATCGGCAATTCTTCATCGACAGGTTCTTCTCTTGAGACGATCGGTCTACTCGCAATCAACGTATCATGCCTCGACAACAAAAAAACGTGGGAATCAAGGTCGTCTCCAGTAAACTCCGGGTTTCCTCTCTTACTCTGTCAAAATGCATATAGAAAGTCCCGTATTAGAAGTGGGAATTCAGAATTTATAGTTGGTGACGAAGAACGGCCCAAGGAAGAGGAACTCCAGTTATCCAAGGGTTCTACTTTGAAT_-_ATGGTCAATGTTCTAAAGGTGCTGAAAGATGCAAACTCCGTTATTCCACATGTAGTTGCAGCAAGTACAATATTGGCTCTTATATTCCCACCATCTTTTACCTGGTTCACAAACAGGTACTATGCTCCTGCACTTGGCTTTTTAATGTTTTCTGTTGGGATCAATTCAAGCGCAAAAGACTTCATCTTTGCAATTAAGCAACCAGATGTTATAGCCTTAGGCTACATTGGTCAATATGTGATAAAGCCCTTACTGGGCCTTGCTTTTGGAAGTATTGCGGTGGCACTTCTTGGCCTCCCAGATGCTATTGGTTCTGGAATAATATTAACATCATGTGTCAGTGGGGCACAACTTTCAAATTATGCAACATATTTGACAGACCCTACGATGGCTCCTTTGAGCATCGTGATGACTGCTTTATCAACTGCTTCAGCAGTTGTAGTTACGCCGATGCTTACACTTCTTCTGTTAGGCAAACGATTGCCAGTTGATGTACAAGGAATGATGTCGAGTATTATGCAAATCGTAATTGCACCTGTTGCAGCGGGCTTGCTTCTAAATAAGTTCGCACCCCGATTTTGTTCATTTGTTCGACAACTGCTGCCACCAGTATCGGTATTTGTAACGGCTCTTTGTGTTGGGTCACCACTGGCAATGAACATCAATACAATTCGTTCTACTTTTGGCCTTACCATACTTGTACCTGTTGTTGGATTTCATGCATTAGCTTTTGTAATTGGTTATGTTATGCCTGGCTTTGCCTTTTCCAAATCACCTGATATGAAAGGCCTTCAGAGAACTATTTCATTCGAGACAGGAATGCAAAGCAGCCTTTTGGGTCTTGCCCTTGCAAATAAATTTTTCCAAGATCCCCTTGTAGGTGTCCCTTCAGCTATTTCAGTGGTTGTCATGTCTCTAATGGGATTTTCCCTTGTCATGTTATGGAAAGAACCAGGATCATTGGAAACTAACATTTAA___TTCTAATTTTTGTGTTCAATATTTTTTATATGAACATAAATTGATGTTAGAATCTTTTATTTATAGTGATTAATTTAGGAGTGGTTTTCAGTGTGATTTTTTGGACTTTCCAATGCTAGAATTTGGTAGAAAAATTTGAGGTGAAATCTTGATTTGTGTTATATACACTGGTGTTTTGACTGCATATATGGATTCAACACCCTGAAAATCATCTAGGGCACTTTGATTGTGGAAGGGTTACCCATCAACCTTGCGATTTCAATAAATTCCTACAGGCTTTTAGA

Fln Alignment:

sp_v1.1_unigene292___NSVIPHVVAASTILALIFPPSFTWFTNRYYAPALGFLMFSVGINSSAKDFIFAIKQPDVIALGYIGQYVIKPLLGLAFGSIAVALLGLPDAIGSGIILTSCVSGAQLSNYATYLTDPTMAPLSIVMTALSTASAVVVTPMXXXXXLGKRLPVDVQGMMSSIMQIVIAPVAAGLLLNKFAPRFCSFVRQLLPPVSVFVTALCVGSPLAMNINTIRSTFGLTILVPVVGFHALAFVIGYVMPGFAFSKSPDMKGLQRTISFETGMQSSLLGLALANKFFQDPLVGVPSAISVVVMSLMGFSLVMLW
A9NX39_____________SGVLPLVVAGTAAAALIKPATFAWVSKEYYAPALGGIMLSIGVQLSVKDFALAFQRPLPLTVGYLAQYLLKPILGV----LIARAFGTPPIFAAGFILTACVAGAQLSTYASFLSKGDVA-LSIVLTSLTTISSVIITPVLTGLLIGSVVPVDAIAMSKSILQVVLIPVALGLALNTYAKPFVNLIRPFMPLMAMVCTSLCIGSPLALNQSQIISMEGLQLVFPVLSFHTFAFVIGYWVAKLPLLRQEE--NVCRTISLCTGMQSSTLAGLLATQFL-GSTNAVPAACSVVAMAIMGLSLASFW

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
676	85			14	0.993533
687	28			71	1.0
830		85	14		0.993533
840			14	85	0.993533
842		14	85		0.993533
844		14		85	0.993533
845	85		14		0.993533
847	85	14			0.993533
852			11	88	0.923564
854	88	11			0.923564
856		88	11		0.923564
857	88			11	0.923564
861		11		88	0.923564
862			88	11	0.923564
864	11			88	0.923564
866	88			11	0.923564
867	88		11		0.923564
868	88	11			0.923564
870	11		88		0.923564
1463		20		80	0.995493
1553			25	75	0.996473
1626	50	50			1.0
1628		50		50	1.0
1629		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain