SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene289

Length: 1422 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene289

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	BTB and MATH domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SI73_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to salt stress	GO:0071472	Biological Process	75%
Blast2go	cellular response to water deprivation	GO:0042631	Biological Process	75%
Blast2go	nucleus	GO:0005634	Cellular Component	75%
Blast2go	cytosol	GO:0005829	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Blast2go	BTB/POZ-like	IPR000210	-	75%
Blast2go	MATH	IPR002083	-	75%
Blast2go	TRAF-like	IPR008974	-	75%
Blast2go	BTB/POZ fold	IPR011333	-	75%
Blast2go	BTB/POZ	IPR013069	-	75%
Blast2go	TRAF-type	IPR013322	-	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMS2

Fln msg: your sequence is shorter than subject: 270 - 390

Fln protein: VHSHFERSLERGPYTLKYHGSMWGYKRFYRRAQLEVSDFVKDDTLKICCTVGVVVSAIHGPTLHYIHIPESNLGQQFGALLEDVENADVTFDVSGEKFHAHKVVLAARSPVFKSMFFGPTQDDWNDKEISIEDTRPEVFKAMLHFIYKDTLPDLEEHGDLEELSDPSPCFLTPETMIEHLLTAADRYGLRQLRWLCESRISQGISVNTVAKILELAQRYQASQLKSACLKFAATNLEDVMKSEGFEYLKENCPSLQLELLQTVAQFKND*

Protein Length: 271

Fln nts: AAGTTCATAGCCATTTTGAACGCAGCCTTGAACGCGGGCCTTACACTTTGAAATACCACGGAAGCATGTGGGGTTACAAACGTTTCTACAGGCGAGCTCAGTTGGAAGTATCAGATTTTGTAAAGGATGATACTCTGAAAATATGTTGCACAGTTGGGGTTGTGGTTTCTGCTATTCACGGCCCTACATTGCACTATATTCATATTCCTGAATCAAACTTGGGCCAACAATTTGGGGCACTTCTTGAAGATGTGGAAAATGCAGATGTCACATTTGATGTATCAGGGGAAAAATTTCATGCTCACAAAGTGGTTCTGGCAGCACGTTCACCTGTATTTAAATCCATGTTTTTTGGGCCCACCCAGGATGATTGGAATGACAAAGAAATTAGCATTGAAGATACAAGGCCAGAGGTGTTTAAGGCTATGTTGCACTTTATTTACAAAGATACCCTTCCAGATTTAGAGGAGCATGGAGATTTAGAAGAGCTTTCTGATCCATCCCCTTGCTTTTTGACACCTGAGACAATGATCGAACATTTGCTTACAGCAGCAGATCGATATGGTCTGCGTCAGTTAAGGTGGTTGTGTGAGTCGAGAATATCACAGGGAATAAGTGTGAACACTGTTGCCAAAATACTTGAACTGGCCCAGCGATATCAGGCTTCTCAACTCAAATCTGCATGCCTTAAATTTGCTGCCACAAACTTGGAAGACGTCATGAAGTCAGAGGGATTTGAATACTTGAAGGAGAATTGCCCCTCTCTTCAGTTGGAGCTTCTACAAACTGTTGCACAATTCAAGAACGATTGA___AACATAAAGAGAAAAGCTGGAGTGCACCAAGTCATGAATCAAATGCCTCTGACAGCAACATATAAGGACACGACAAACTTAGTGATACAATCTACAGTGAGAAATCTGAAAATTCTGATTAGTTGAATGACACTAATTTTGAGGTATTTCTGGCTTTGGGGAGAAATTAACCAAGATGTCCCTGAAGCAGAAATGAAAGATTTTTTCCACTCTGGAAATCCTTGAGGTGACGACTTTGTAAGATGCATCCCAGCTTGCGCTAATAACTATGGAGCAATCAGCATGCTTTTTTTTCAAATATTTTTTTGTAGACTTTCAAAATTGATAACGATTTCATTGTACTACGAACGATGCACTGTTTCTTTCTAAATACACATGGATATCCAAGCCACCGGATGGGTGGCCATTATGCCTTTGCTATTACGAGAGCATCTGTTGCGTTTTATGATATCCGATAAAATTCGAACTCTTGTCAAATTGTCGAGGGCTCTATGGTTATTGCTTCGATATGAAATGCAGGACACAACGAGGATACAGTCTTGCATCATATTCTCTGTGACGCATTACAAGAAATCAGAATGTGAATAAACAGGAAATAATTCTTAATAAC

Fln Alignment:

sp_v1.1_unigene289___VHSHFERSLERGPYTLKYHGSMWGYKRFYRRAQLEVSDFVKDDTLKICCTVGVVVSAIHGPTLHYIHIPESNLGQQFGALLEDVENADVTFDVSGEKFHAHKVVLAARSPVFKSMFFGPTQDDWNDKEISIEDTRPEVFKAMLHFIYKDTLPDLEEHGDLEELSDPSPCFLTPETMIEHLLTAADRYGLRQLRWLCESRISQGISVNTVAKILELAQRYQASQLKSACLKFAATNLEDVMKSEGFEYLKENCPSLQLELLQTVAQFKND
B8LMS2_____________VHSHFERSLERGPYTLKYHGSMWGYKRFYRRAQLESSDFVKDDTLKICCTVGVVVSAIHGPRLHYIRIPESNLGQQFGALLEDVENADVTFDVSGEKFHAHRVVLAARSPVFKSMFFG-SSEEWNDKEISIEGTKPEVFKAMLHFIYRDTLPDLEEHADLEELSDPSPCFLTPETMIEYLLTAADRYGLRQLRWLCESRISQGITVSTVAKILELAQRYQASQLKSACLKFAASNLEEVMKSEGFEYLKENCPSLQLELLQTVAQFKDD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
497		16		83	0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain