SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene288

Length: 1673 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene288

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	calmodulin-binding protein; K02183 calmodulin	-	-	44%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	55%
Blast2go	calmodulin-binding protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	calmodulin binding	GO:0005516	Molecular Function	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Calmodulin binding protein-like	IPR012416	-	0.0	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9S6G7

Fln msg: your sequence is shorter than subject: 392 - 427

Fln protein: VVTLAVTHFTVKDHRGELYKKHYPPALDDEVWRLDRVGKDGAFHKRLSAEGINTVQDFLRLYVTDRLRLRQILGNGMSAKMWEGTVDHARTCTLNNKGYVYHSPNNITLVFNVIFELALVITEAQTITRDELSGTQKSFVERMVKHAYQHWNEVHELDDEFPISNASRSLTMQYSHTGVPQDPNFQILQEQDGNGAQLDHKSQMMGNMLMSHQQTAKEVNSDWNHLGGDNVNIVTSPVGTGFTQQSIVTHPAESSLIAGSQQELVYPLSMAYSTPNPNLHIQRNVIKNQTVEEADSIVIRNEWAREPREGPRYYHTNSSNELTTDVQYRVTYGDDFQVTQNWFPGINGGTVDHVYNFFPNTQPIKASVLQIFLQHHVQSILPWIVCTEKPI*

Protein Length: 393

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTCACGGTTAAAGATCATCGCGGAGAATTGTATAAGAAGCATTATCCTCCAGCTCTGGATGATGAAGTATGGCGTCTAGACAGAGTTGGCAAGGATGGTGCTTTCCACAAGAGGCTAAGTGCTGAAGGAATCAACACAGTGCAGGATTTCTTAAGGTTATATGTGACAGATCGCCTGCGACTTCGCCAAATTCTTGGCAATGGGATGTCAGCCAAGATGTGGGAAGGAACAGTGGATCATGCAAGGACATGCACACTGAATAACAAAGGTTACGTGTACCATAGCCCAAACAATATCACTCTTGTCTTCAATGTCATATTTGAACTAGCACTTGTTATTACAGAGGCACAAACCATTACTAGGGATGAACTTTCTGGAACTCAAAAGTCTTTTGTCGAAAGAATGGTAAAACATGCATATCAACATTGGAATGAAGTGCATGAACTGGACGATGAATTCCCGATCAGTAATGCATCTCGATCTTTAACAATGCAATATAGTCATACTGGAGTTCCTCAAGATCCCAACTTTCAGATACTTCAAGAGCAAGATGGGAATGGAGCACAGTTGGATCACAAGTCACAGATGATGGGTAACATGTTAATGAGCCATCAACAGACAGCAAAAGAGGTTAATAGTGATTGGAATCATCTTGGTGGTGATAATGTGAACATAGTAACATCTCCAGTGGGAACAGGTTTTACACAGCAGAGTATAGTAACCCATCCTGCAGAGTCATCCTTAATTGCTGGTTCACAGCAAGAGCTTGTATATCCCCTTTCCATGGCTTACTCAACTCCAAATCCCAATTTGCACATACAGAGGAATGTCATTAAGAATCAAACTGTAGAAGAGGCTGACAGTATTGTTATCAGAAATGAGTGGGCTAGGGAGCCCCGTGAAGGGCCAAGATATTACCACACAAACTCAAGCAATGAATTGACAACTGATGTGCAATATAGAGTTACATATGGTGACGATTTTCAAGTGACGCAAAACTGGTTTCCTGGTATCAATGGGGGCACAGTGGATCATGTCTATAACTTCTTTCCTAACACGCAACCCATCAAAGCTTCAGTTTTGCAAATCTTCCTTCAACATCACGTCCAATCAATATTGCCATGGATCGTTTGCACGGAAAAGCCTATATAG___GCTGGTTGAAACTGAAAGCAGCACTAAAATGGGGAATTACTGTTAGAAAGGTGGCTGCTGCAAAAAGAGCAATATTAGAAGAATTGGAGGATTGACTTAATAATATGAAGGTGCCTGTGCAGGTTGTAGTATACATGAATTGTCAATGATACCACAATAGCCATCACAAATACATAGAATTTATCAGTAACAGTATATTAATGCAGAACAGAATCCAACATAGAGATATGCCACTGTAGTAGATTGCAGTTACAGACATCATATAGATGGCAACCGCAAGATAGAGAGGGCCCATGAAACATGGTACTGAAACTGCCAGCAATGCTAGTGCTGGAGTGGGAGAGAATGTTGTCACATCAACCCAGGTTCTTGGGGTTTTGCACTTAAAAGCCAGCTTCCAGAATAATTTTGGTCTGGCTGTATTGCTGGGGATTCATATGTGGCTGCAGTTGTAAAGTATTAAATCTCAGAAGGGCATTTTATGCAAATCAAATTT

Fln Alignment:

sp_v1.1_unigene288___FTVKDHRGELYKKHYPPALDDEVWRLDRVGKDGAFHKRLSAEGINTVQDFLRLYVTDRLRLRQILGNGMSAKMWEGTVDHARTCTLNNKGYVYHS--PNNITLVFNVIFELALVITEAQTITRDELSGTQKSFVERMVKHAYQHWNEVHELDDEFPISNASRSLTMQYSHTGVP
A9S6G7_____________FTVKDHRGELYKKHYPPALNDEVWRLDKIGKDGAFHKRLNQANVVTVEDFLRLVVMDPQRLRNILGNGMSNKMWEGTVEHAKTCVLSGKLHVYYADEKQNIGVIFNNIFQLMGLIADGSYMSVDSLSDSEKVYVDKLVKVAYENWENVVEYDGEALIGVKNYQAKGFDSHTSDP

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
506	60			40	1.0
666		14	85		0.993533
668		14		85	0.993533
670		14	85		0.993533
869	85	14			0.993533
870	85			14	0.993533
872	14			85	0.993533
895		11		88	0.923564
896	11			88	0.923564
897		11	88		0.923564
898	11			88	0.923564
900	88		11		0.923564
901			11	88	0.923564
902		88	11		0.923564
1076		66		22	0.999999
1100	75		25		0.996473
1123	20	80			0.995493
1125			20	80	0.995493
1126		80	20		0.995493
1178		14		85	0.993533
1223		33		66	1.0
1361	82	11			0.999919
1469	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain