SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene285

Length: 2425 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene285
CGTCGTGACCTTGGCTGTCACTCAGGTTTGTAGGCGTCTTGGTCTCGGATCCATGGCTCCAATGTGAGTTCACACAAGTCCAGCTCAGGGATTTGAAATCTCGTTTTATCCATATGAAACCGACACGGGGACTGTCAGAGTTGCGGATTTGGCGTCGGGGATGCCAAAACTTAAAGCTTTTCAGGAATTATTGACCGAGAAAGAAGTAAAGGCGATTCTTGAAGAATATTACGCGGATACGGAAGAAGAGATAGATTTTGAAGCTTTTCTCCGGATGTATCTTAATTTGCAAAATCGCGCAAGCACCAAAAAGGGGGGTTCAAGAAACTCGTCCTCATTTTTGAATGCAGCGACAACTACCTTGCTTCATACCATTAGTGAGTCTGAGAAGAAGGCTTATGTTGCACATATCAACAGTTGCTTTGAAAATGACCCCATGATGAAGAGATACCTTCCAATCGACCCCTCCACAAATGATCTCTTTGAGATAGCAAAGGATGGGGTTCTGCTATGTAAACTGATCAATTTGGCAGTCCCGGGGACGATTGATGAGCGCACTATAAATACGAAGAAAAATCTCAACCCATGGGAAAGGAATGAAAATCATACTCTTTGTCTCAATTCTGCGAAGGCAATTGGATGCACAGTTGTCAATATTGGAACCCAAGATCTAGTTGAAGGAAGGCCTCATCTTTTACTTGGTTTAATATCTCAAATTATTAAGATACAACTTCTTGCAGACCTTGACTTGAAGAAAACACCCGAGCTTGTGGAGTTGGTTGATGATAGTAAGGAAATGGAGGAACTCATGAGTCTAGCTCCTGAGAAGGTTTTGTTGCGATGGATGAATTTTCATCTTCGTAAAGCAGGTTTCAAGAGAGTTGTTTCAAATTTTTCTTCAGATCTGAAGGATGGAGAGGCATATGCTGTTCTGCTTAATACCCTTGCACCAGAGTGCTGTAATCTTTCCCCTTTGGAGTCCAAGGACCTCATGGAAAGGGCCAAGTTGATTTTGTTGCAAGCAGAAAAAATCAATTGTAAAAGATATTTGACGCCAAAGGACATTGTTGAGGGCTCTACCAATTTGAACATTGCTTTTGTTGCTCATATTTTCCACCAAAGGAAAGGATTATCATTGGATTCTAGCAAGGCATCAATTGCAGAGACCATGAAAAATGATGAAGTCTCCAGGGAGGAAAGAGCTTTCCGCTTTTGGATGAACAGTCTTGGTACTGATACTTATGTCAACAATTCTTTTGAAGATGTGAGAAATGGGTGGGTCTTACTGGAGGTACTTGATAAGGTGGTACCAGGGATAGTTAATTGGAAACTTGCCAACAAGCCTCCAATAAAGATGCCTTTCAAAAAAGTGGAAAATTGCAACCAGGTTATCAGAATTGGGAAGCAGTTGAAGTTTTCACTTGTGAATGTTGCGGGAAATGATTTTGTGCAAGGAAATAAAAAGCTTATTCTTGCATTCCTGTGGCAGTTGATGCGCCAAAATATTCTTCAGCTCCTCAAGAACCTGAGGCATCATTCTCATGGTAAAGAGATAACAGATACTGATATTTTGCAGTGGGCCAATGAAAAAGTGAAGAGCTCAGGCAGAACTTCTCAGATGGGAAGCTTTAAGGATAAAAGTCTTTCAAGTGGAATATTTTTCCTCGAGCTTCTGACTGCTGTGGAACCTAGGGTGGTGAGTTGGAATGTTGTCACCAAAGGGGAGACTGAGGAAGAGAAGAAGTTGAATGCTACCTATATAATCAGTGTGGCACGAAAGATGGGATGCTCAATATTTCTTCTGCCAGAAGACATTGTCGAGGTCAACCCTAAAATGATTCTCACGCTGACTGCAAGTATTATGCTATGGAGTCTTTCAAATCAAACAGGGGAAGACACTTCTACCATGTCTTCCGAACTTGAAAACGGAATAGCTTCAGCTAGCATCTCAGCTGTAGAGGATGACAGTGCTTCACATGCCTCTTTACCTCCAGATAATGGAAGTCAATCACAGAGCGAGTAATATGGCTGCCATTGATTAATTTAATTCATTTGATCGTCTTTACTCGGATTTTAGCATTGATGACTTGATTCCATAAAGCTTGGTCCTGTTTATAGGCCTCACTTCAAGAAGTTTGACATTGGACAAACTTCCATGTGTATTAATACTTGTATCGAGGCATGTCTTCCAGAGATCGACAATATGTACTGTATTATCCCAAATGTTGGGATCTTGTAGCAACTAGAATTTCGGAGGCAGTATAAATGCAGGTGTTAAATCATGTGTGTATATATAAGCACCATAGTCGGACGGATTCCCAACTTTGAGTCGATATATATTACTGAGCCACATGGCTCCATTGAGTTTTGTTTTGATGATTGATATTAATTTGATCATATTATTGAAGTTATTGTTGGATATGAC

Ace file of the UniGene sp_v1.1_unigene285

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	fimbrin, putative	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Actinin-type, actin-binding, conserved site	IPR001589	-	0.0	81%
Blast2go	Calponin homology domain	IPR001715	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A879

Fln msg: your sequence is longer than subject: 621 - 134

Fln protein: MPKLKAFQELLTEKEVKAILEEYYADTEEEIDFEAFLRMYLNLQNRASTKKGGSRNSSSFLNAATTTLLHTISESEKKAYVAHINSCFENDPMMKRYLPIDPSTNDLFEIAKDGVLLCKLINLAVPGTIDERTINTKKNLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLLLGLISQIIKIQLLADLDLKKTPELVELVDDSKEMEELMSLAPEKVLLRWMNFHLRKAGFKRVVSNFSSDLKDGEAYAVLLNTLAPECCNLSPLESKDLMERAKLILLQAEKINCKRYLTPKDIVEGSTNLNIAFVAHIFHQRKGLSLDSSKASIAETMKNDEVSREERAFRFWMNSLGTDTYVNNSFEDVRNGWVLLEVLDKVVPGIVNWKLANKPPIKMPFKKVENCNQVIRIGKQLKFSLVNVAGNDFVQGNKKLILAFLWQLMRQNILQLLKNLRHHSHGKEITDTDILQWANEKVKSSGRTSQMGSFKDKSLSSGIFFLELLTAVEPRVVSWNVVTKGETEEEKKLNATYIISVARKMGCSIFLLPEDIVEVNPKMILTLTASIMLWSLSNQTGEDTSTMSSELENGIASASISAVEDDSASHASLPPDNGSQSQSE*

Protein Length: 622

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTGTAGGCGTCTTGGTCTCGGATCCATGGCTCCAATGTGAGTTCACACAAGTCCAGCTCAGGGATTTGAAATCTCGTTTTATCCATATGAAACCGACACGGGGACTGTCAGAGTTGCGGATTTGGCGTCGGGG_-_ATGCCAAAACTTAAAGCTTTTCAGGAATTATTGACCGAGAAAGAAGTAAAGGCGATTCTTGAAGAATATTACGCGGATACGGAAGAAGAGATAGATTTTGAAGCTTTTCTCCGGATGTATCTTAATTTGCAAAATCGCGCAAGCACCAAAAAGGGGGGTTCAAGAAACTCGTCCTCATTTTTGAATGCAGCGACAACTACCTTGCTTCATACCATTAGTGAGTCTGAGAAGAAGGCTTATGTTGCACATATCAACAGTTGCTTTGAAAATGACCCCATGATGAAGAGATACCTTCCAATCGACCCCTCCACAAATGATCTCTTTGAGATAGCAAAGGATGGGGTTCTGCTATGTAAACTGATCAATTTGGCAGTCCCGGGGACGATTGATGAGCGCACTATAAATACGAAGAAAAATCTCAACCCATGGGAAAGGAATGAAAATCATACTCTTTGTCTCAATTCTGCGAAGGCAATTGGATGCACAGTTGTCAATATTGGAACCCAAGATCTAGTTGAAGGAAGGCCTCATCTTTTACTTGGTTTAATATCTCAAATTATTAAGATACAACTTCTTGCAGACCTTGACTTGAAGAAAACACCCGAGCTTGTGGAGTTGGTTGATGATAGTAAGGAAATGGAGGAACTCATGAGTCTAGCTCCTGAGAAGGTTTTGTTGCGATGGATGAATTTTCATCTTCGTAAAGCAGGTTTCAAGAGAGTTGTTTCAAATTTTTCTTCAGATCTGAAGGATGGAGAGGCATATGCTGTTCTGCTTAATACCCTTGCACCAGAGTGCTGTAATCTTTCCCCTTTGGAGTCCAAGGACCTCATGGAAAGGGCCAAGTTGATTTTGTTGCAAGCAGAAAAAATCAATTGTAAAAGATATTTGACGCCAAAGGACATTGTTGAGGGCTCTACCAATTTGAACATTGCTTTTGTTGCTCATATTTTCCACCAAAGGAAAGGATTATCATTGGATTCTAGCAAGGCATCAATTGCAGAGACCATGAAAAATGATGAAGTCTCCAGGGAGGAAAGAGCTTTCCGCTTTTGGATGAACAGTCTTGGTACTGATACTTATGTCAACAATTCTTTTGAAGATGTGAGAAATGGGTGGGTCTTACTGGAGGTACTTGATAAGGTGGTACCAGGGATAGTTAATTGGAAACTTGCCAACAAGCCTCCAATAAAGATGCCTTTCAAAAAAGTGGAAAATTGCAACCAGGTTATCAGAATTGGGAAGCAGTTGAAGTTTTCACTTGTGAATGTTGCGGGAAATGATTTTGTGCAAGGAAATAAAAAGCTTATTCTTGCATTCCTGTGGCAGTTGATGCGCCAAAATATTCTTCAGCTCCTCAAGAACCTGAGGCATCATTCTCATGGTAAAGAGATAACAGATACTGATATTTTGCAGTGGGCCAATGAAAAAGTGAAGAGCTCAGGCAGAACTTCTCAGATGGGAAGCTTTAAGGATAAAAGTCTTTCAAGTGGAATATTTTTCCTCGAGCTTCTGACTGCTGTGGAACCTAGGGTGGTGAGTTGGAATGTTGTCACCAAAGGGGAGACTGAGGAAGAGAAGAAGTTGAATGCTACCTATATAATCAGTGTGGCACGAAAGATGGGATGCTCAATATTTCTTCTGCCAGAAGACATTGTCGAGGTCAACCCTAAAATGATTCTCACGCTGACTGCAAGTATTATGCTATGGAGTCTTTCAAATCAAACAGGGGAAGACACTTCTACCATGTCTTCCGAACTTGAAAACGGAATAGCTTCAGCTAGCATCTCAGCTGTAGAGGATGACAGTGCTTCACATGCCTCTTTACCTCCAGATAATGGAAGTCAATCACAGAGCGAGTAA___TATGGCTGCCATTGATTAATTTAATTCATTTGATCGTCTTTACTCGGATTTTAGCATTGATGACTTGATTCCATAAAGCTTGGTCCTGTTTATAGGCCTCACTTCAAGAAGTTTGACATTGGACAAACTTCCATGTGTATTAATACTTGTATCGAGGCATGTCTTCCAGAGATCGACAATATGTACTGTATTATCCCAAATGTTGGGATCTTGTAGCAACTAGAATTTCGGAGGCAGTATAAATGCAGGTGTTAAATCATGTGTGTATATATAAGCACCATAGTCGGACGGATTCCCAACTTTGAGTCGATATATATTACTGAGCCACATGGCTCCATTGAGTTTTGTTTTGATGATTGATATTAATTTGATCATATTATTGAAGTTATTGTTGGATATGAC

Fln Alignment:

sp_v1.1_unigene285___MGSFKDKSLSSGIFFLELLTAVEPRVVSWNVVXXXXXXXXXXLNATYIISVARKMGCSIFLLPEDIVEVNPKMILTLTASIMLWSLSNQTGEDTSTMSSELENGIASASISAVEDDSASHASLPPDNGSQSQSE
D5A879_____________MGSFKDKSLTNGIFFLELLTAVEPRVVSWNVVTKGETEQEKKLNATYIISVARKMGCSIFLLPEDIVEVNPKMILTLTASIMLWSLSNQTGEDTSTMSSELENGLASASISSVDNDSASQASLPPDNGSQSQIE

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
459	80		20		0.995493
495	83		16		0.994512
768		66		33	0.997452
996		50		50	1.0
1135		14		85	0.993533
1165	12		87		0.992554
1400	12		87		0.992554
1412	85			14	0.993533
1508	88	11			0.923564
1597	10		90		0.90298
1602	11		88		0.923564
2406	10			90	0.90298
2411	12		87		0.992554
2414	28		71		1.0
2415	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain