SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene279

Length: 3367 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene279
CGTCGTGACCTTGGCTGTCACTCAGGTTTGTTATTTGATGGCGTCTAGTGTTTCAAGGGTTTGAGAGGCTTACTAGGTTTTCGCCATTTCGGTGATTTTGTTATTGAGCCTCGAGACCTCGGCGGTAAAGGATTGTGTTGCAGAGGGTGCGGGCATGGAGAGGGCCGAGCGGCTGGACTTCGATGGCGTTAAAGGCGTGAGGAAGCCACGGACATTTTCGGTAAGGAAGCCCAGATCGGGAGGATCCCATGCAACGTTTCTCAACGAGTACGAGCATTCGTCGCCGTCGGATTCCCCGCCCTCAGATCCTCGAAGTGCTGGAAATGTTGATAAGGGTTTGAACGAAGAACCTGGTAAGTATTCTAATCCTCATTCTCATGCTGATGATTACAAGAGAAGGCTAGGGAGTAGTAATAGCAAGGGTAAATTTGAGATGGGGAAGGATGATTTGGGTAAAAGTAATAAGTCGGCTAGTCACAGAAGGGCTGGTGGAGATGATGACTGGGTGCCCGAGAGGGATGAAATGAAGAGGGTTCGGAGGGATGCTGCAGACCATAATGGCAAGCATTCCGGCAGGAGCCCAGATAATGATAGGAATCATGACAGGAAGTATGATAGAGGGGGTTCCAAGCCTCAGGAGTATGAGCGGAGTAAGAGGCCTGACAAGTCTTTCAGGGAGAAAAGTCACAGGGATGGGTCTCATTATGAGAGGGATTCCAAGGAGTATTCGACCGGGGAGAAGGCCGAGAAGGAAAGGGGCAGATTTGGTGAAACATTCAAGCGGAAGCGGCACTGCGATGATTTAGATCGCTCGAAGCGGTTTCGTGATGGTGGGATGGACAGGAAGGATTCTTATGAGAGGAATGGTAGTCATGACAGATTGGACCGTGATCGTGAAAGGGACCGGGATAGGAATAGGGATCGAGATGTGCAGGGCAATGTGAAAAGCAGCGAAGGCGGCCAAGGCCCCAGTCATGTTCACAAAAGTCTGATTGGGGGATTGGGTGCAGGTGGGTCTTCGGGGGACTGGCGTAATTCTGATGGGCACAAAGTGCCGGAGAGAAGATCCTCAGATTCCCACAATCTGAGTCAACTAAAAGGAGGAACGGACTCCGGGCATAGTAGAATGACAGATGGAGGTAGGAGGGCAGAAGGGCGGACTATGGATAGTCGTCATGCAGGACAATCAAAATCAGCTAGCGAAGGTCAGAATGGGGGACAAGTCAAAACACCGCTTGATGGAAGAACCTCTCATAACAGGGATTCTGATATGAAGTCTTTGGATAAATCAGTGCTACGGCAAGATGATCCGCCTTCTCAAGAGGGTCGGTTGACAAAGGTGAAGCTTAAGGTAGGTGGAGTTACTCATACTATTCATGCAAATTCCACTGGCAATCCAGGAGGAACCAAACAGAAGGGCTTGGAAGCCTCATCTGCATCTGGGAAGCCTCCACAAGCAACTGAAGGTGGGAGACGGCGTCAGAGACTTATTCTTCAGGAAAATTCGGATGATGAAGATGATTTCCCTGCAAGGGTGGAAATGCAAGAATCACCTAAGAAGGAACTTCAGTTTTATACCAATGCATCTGTTGCAAAAATGGATACACATCATGCCAAGGAAATTACCTCTGGAAAGCAGGTAGAAATGACTAATAATATTGTAGCTGGCCAACCTGTTCGCAAAAGTACAAGGATACCTAAGAAACGCATACTGGATGGTGAACATGATGAGGATGATGATGGCGAGGAAGCATCACAGCGTAAAATCTCAAGGAACACCAAGAAACGTGTTCCAGTTGGTGAGTATGAGGAAGATGAGGAGGGACATGAAACATCTCAGCGACGTAGTTTAAGGATGCCTAAGAAGCGGATGGTGGATGCTGAATATGATGAAGATGATGAGGAAGATGAAATACAGCAGCATAAAAGAAGATTGAAAAGGTCAAAATATGAAAGGGATTCAGAAGATTTATATCAGGAAGATGATGAAGAAGAAGCTGCATCAGCCGATGAAGATGCAGAAATTGTGGATGCTGAACTTGAAGGAAAGAAGAAGAGAAGCAGACGAAAACAAGAAGTTGGAAATTCAACTTTTGATGATAAGAAGGAAGCTCCCCTTACTGCACGCCAAAGGGCTATGCAGTCATGCAAAGATGTTGATTCAGAAGTAGGAGCAAATCTGATCGAATTTCCAGAAGGACTGCCTCAGACCAGTCAGAGAAAACGGAAAGAAAAGTTATCAGAGGTGGAACAACAATTGAAGAAAGCAGAGGCAGCTCAGAGACGCAAGATGCAAGTAGAGAAGGCTGCAAATGAGATTCAGGCTGAGGCCATCAAGAAGATTCTAGGTCAGGACTCATTAAGGAAGAAACGGGAAGATAAGCTACGGAAGCAAAGAGATGAGATGGCACAGGAGAAGGCTGCTAGTGCTATGATGCTTGCATCAAACAGTGTGAGATGGGTAATGGGGCCTTCTGGCACAGTTGTTTCATTTTCTGAAAATACAGGGCTTCCGAGTATATTCAATTCTGGTCCATGCAGGTATCCTCCACCTCGTGAGAAATGTGCTGGGCCATTATGTAACAATACATATAAATATAGAGACTCTAAGTCTAAGCTCCCTTTATGCAGTCTTCAGTGTTACCGTGCGATACATGATGTTACACACACTGTCTCCACTTGTTAGTGTTGCAGAACTCGATTGCTGTGTTTTATGCCCCCTCTCAAGAGCACAGGCACACAAGCACAGTACATGTTCATGCCATTTTTGGGAATAAATTTTAGTGCATTTGGCAGTAGAGTTTTTGATGTATATGTGTTTGAATCATTCGAGACGGAGAAGGGGTGGCACATGCTGTATCTATCCAAGAGGAGGCTTCATAATATCATGTTGAAGCTCATGTTTAGAATAAACGGGGACCTGAGTTGGACATACTTGTATCTAAAGAATCATTTTTATGTATAGATAAATCAATTATACGGGGAAGATTTGAGATGAATACATCAAGATGTTAATTGTTCGAATCCATTAGCTGGAGAAGATTTGGAACAGTGGTGGTTTACTTGCAAAGGGGATTTCGTCTGCTGCTATAATTGATTTAGCCGTTGTATATGTTATGCAGCTCGAATAGTGTGGTTAATGTTCTTACTATTGCACCGAGGGATATTCTGGTTGTAAATATGCCTTGCATCTCTTCTTTTGTTTCACGGGTACGTGGATTTTTTGGATCCAATGTAGGCCTACTATTCTAGAACCATGACAAAGATGTAAAGATGACAATAACGTTGGCCATCGTATTATGTGGCAATGCCCTAACAAGTTCAATTTTGTCTTGAACGTTGGTGCTGTACATCTCACCTTTGATAA

Ace file of the UniGene sp_v1.1_unigene279

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PAPA-1-like family protein / zinc finger (HIT type) family protein [Arabidopsis thaliana] dbj\|BAC42342.1\| unknown protein [Arabidopsis thaliana]	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	protein	-	-	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	PAPA-1-like conserved region	IPR006880	-	0.0	62%
Blast2go	Zinc finger, HIT-type	IPR007529	-	0.0	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PS52

Fln msg: your sequence is longer than subject: 844 - 407

Fln protein: MERAERLDFDGVKGVRKPRTFSVRKPRSGGSHATFLNEYEHSSPSDSPPSDPRSAGNVDKGLNEEPGKYSNPHSHADDYKRRLGSSNSKGKFEMGKDDLGKSNKSASHRRAGGDDDWVPERDEMKRVRRDAADHNGKHSGRSPDNDRNHDRKYDRGGSKPQEYERSKRPDKSFREKSHRDGSHYERDSKEYSTGEKAEKERGRFGETFKRKRHCDDLDRSKRFRDGGMDRKDSYERNGSHDRLDRDRERDRDRNRDRDVQGNVKSSEGGQGPSHVHKSLIGGLGAGGSSGDWRNSDGHKVPERRSSDSHNLSQLKGGTDSGHSRMTDGGRRAEGRTMDSRHAGQSKSASEGQNGGQVKTPLDGRTSHNRDSDMKSLDKSVLRQDDPPSQEGRLTKVKLKVGGVTHTIHANSTGNPGGTKQKGLEASSASGKPPQATEGGRRRQRLILQENSDDEDDFPARVEMQESPKKELQFYTNASVAKMDTHHAKEITSGKQVEMTNNIVAGQPVRKSTRIPKKRILDGEHDEDDDGEEASQRKISRNTKKRVPVGEYEEDEEGHETSQRRSLRMPKKRMVDAEYDEDDEEDEIQQHKRRLKRSKYERDSEDLYQEDDEEEAASADEDAEIVDAELEGKKKRSRRKQEVGNSTFDDKKEAPLTARQRAMQSCKDVDSEVGANLIEFPEGLPQTSQRKRKEKLSEVEQQLKKAEAAQRRKMQVEKAANEIQAEAIKKILGQDSLRKKREDKLRKQRDEMAQEKAASAMMLASNSVRWVMGPSGTVVSFSENTGLPSIFNSGPCRYPPPREKCAGPLCNNTYKYRDSKSKLPLCSLQCYRAIHDVTHTVSTC*

Protein Length: 845

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTGTTATTTGATGGCGTCTAGTGTTTCAAGGGTTTGAGAGGCTTACTAGGTTTTCGCCATTTCGGTGATTTTGTTATTGAGCCTCGAGACCTCGGCGGTAAAGGATTGTGTTGCAGAGGGTGCGGGC_-_ATGGAGAGGGCCGAGCGGCTGGACTTCGATGGCGTTAAAGGCGTGAGGAAGCCACGGACATTTTCGGTAAGGAAGCCCAGATCGGGAGGATCCCATGCAACGTTTCTCAACGAGTACGAGCATTCGTCGCCGTCGGATTCCCCGCCCTCAGATCCTCGAAGTGCTGGAAATGTTGATAAGGGTTTGAACGAAGAACCTGGTAAGTATTCTAATCCTCATTCTCATGCTGATGATTACAAGAGAAGGCTAGGGAGTAGTAATAGCAAGGGTAAATTTGAGATGGGGAAGGATGATTTGGGTAAAAGTAATAAGTCGGCTAGTCACAGAAGGGCTGGTGGAGATGATGACTGGGTGCCCGAGAGGGATGAAATGAAGAGGGTTCGGAGGGATGCTGCAGACCATAATGGCAAGCATTCCGGCAGGAGCCCAGATAATGATAGGAATCATGACAGGAAGTATGATAGAGGGGGTTCCAAGCCTCAGGAGTATGAGCGGAGTAAGAGGCCTGACAAGTCTTTCAGGGAGAAAAGTCACAGGGATGGGTCTCATTATGAGAGGGATTCCAAGGAGTATTCGACCGGGGAGAAGGCCGAGAAGGAAAGGGGCAGATTTGGTGAAACATTCAAGCGGAAGCGGCACTGCGATGATTTAGATCGCTCGAAGCGGTTTCGTGATGGTGGGATGGACAGGAAGGATTCTTATGAGAGGAATGGTAGTCATGACAGATTGGACCGTGATCGTGAAAGGGACCGGGATAGGAATAGGGATCGAGATGTGCAGGGCAATGTGAAAAGCAGCGAAGGCGGCCAAGGCCCCAGTCATGTTCACAAAAGTCTGATTGGGGGATTGGGTGCAGGTGGGTCTTCGGGGGACTGGCGTAATTCTGATGGGCACAAAGTGCCGGAGAGAAGATCCTCAGATTCCCACAATCTGAGTCAACTAAAAGGAGGAACGGACTCCGGGCATAGTAGAATGACAGATGGAGGTAGGAGGGCAGAAGGGCGGACTATGGATAGTCGTCATGCAGGACAATCAAAATCAGCTAGCGAAGGTCAGAATGGGGGACAAGTCAAAACACCGCTTGATGGAAGAACCTCTCATAACAGGGATTCTGATATGAAGTCTTTGGATAAATCAGTGCTACGGCAAGATGATCCGCCTTCTCAAGAGGGTCGGTTGACAAAGGTGAAGCTTAAGGTAGGTGGAGTTACTCATACTATTCATGCAAATTCCACTGGCAATCCAGGAGGAACCAAACAGAAGGGCTTGGAAGCCTCATCTGCATCTGGGAAGCCTCCACAAGCAACTGAAGGTGGGAGACGGCGTCAGAGACTTATTCTTCAGGAAAATTCGGATGATGAAGATGATTTCCCTGCAAGGGTGGAAATGCAAGAATCACCTAAGAAGGAACTTCAGTTTTATACCAATGCATCTGTTGCAAAAATGGATACACATCATGCCAAGGAAATTACCTCTGGAAAGCAGGTAGAAATGACTAATAATATTGTAGCTGGCCAACCTGTTCGCAAAAGTACAAGGATACCTAAGAAACGCATACTGGATGGTGAACATGATGAGGATGATGATGGCGAGGAAGCATCACAGCGTAAAATCTCAAGGAACACCAAGAAACGTGTTCCAGTTGGTGAGTATGAGGAAGATGAGGAGGGACATGAAACATCTCAGCGACGTAGTTTAAGGATGCCTAAGAAGCGGATGGTGGATGCTGAATATGATGAAGATGATGAGGAAGATGAAATACAGCAGCATAAAAGAAGATTGAAAAGGTCAAAATATGAAAGGGATTCAGAAGATTTATATCAGGAAGATGATGAAGAAGAAGCTGCATCAGCCGATGAAGATGCAGAAATTGTGGATGCTGAACTTGAAGGAAAGAAGAAGAGAAGCAGACGAAAACAAGAAGTTGGAAATTCAACTTTTGATGATAAGAAGGAAGCTCCCCTTACTGCACGCCAAAGGGCTATGCAGTCATGCAAAGATGTTGATTCAGAAGTAGGAGCAAATCTGATCGAATTTCCAGAAGGACTGCCTCAGACCAGTCAGAGAAAACGGAAAGAAAAGTTATCAGAGGTGGAACAACAATTGAAGAAAGCAGAGGCAGCTCAGAGACGCAAGATGCAAGTAGAGAAGGCTGCAAATGAGATTCAGGCTGAGGCCATCAAGAAGATTCTAGGTCAGGACTCATTAAGGAAGAAACGGGAAGATAAGCTACGGAAGCAAAGAGATGAGATGGCACAGGAGAAGGCTGCTAGTGCTATGATGCTTGCATCAAACAGTGTGAGATGGGTAATGGGGCCTTCTGGCACAGTTGTTTCATTTTCTGAAAATACAGGGCTTCCGAGTATATTCAATTCTGGTCCATGCAGGTATCCTCCACCTCGTGAGAAATGTGCTGGGCCATTATGTAACAATACATATAAATATAGAGACTCTAAGTCTAAGCTCCCTTTATGCAGTCTTCAGTGTTACCGTGCGATACATGATGTTACACACACTGTCTCCACTTGTTAG___TGTTGCAGAACTCGATTGCTGTGTTTTATGCCCCCTCTCAAGAGCACAGGCACACAAGCACAGTACATGTTCATGCCATTTTTGGGAATAAATTTTAGTGCATTTGGCAGTAGAGTTTTTGATGTATATGTGTTTGAATCATTCGAGACGGAGAAGGGGTGGCACATGCTGTATCTATCCAAGAGGAGGCTTCATAATATCATGTTGAAGCTCATGTTTAGAATAAACGGGGACCTGAGTTGGACATACTTGTATCTAAAGAATCATTTTTATGTATAGATAAATCAATTATACGGGGAAGATTTGAGATGAATACATCAAGATGTTAATTGTTCGAATCCATTAGCTGGAGAAGATTTGGAACAGTGGTGGTTTACTTGCAAAGGGGATTTCGTCTGCTGCTATAATTGATTTAGCCGTTGTATATGTTATGCAGCTCGAATAGTGTGGTTAATGTTCTTACTATTGCACCGAGGGATATTCTGGTTGTAAATATGCCTTGCATCTCTTCTTTTGTTTCACGGGTACGTGGATTTTTTGGATCCAATGTAGGCCTACTATTCTAGAACCATGACAAAGATGTAAAGATGACAATAACGTTGGCCATCGTATTATGTGGCAATGCCCTAACAAGTTCAATTTTGTCTTGAACGTTGGTGCTGTACATCTCACCTTTGATAA

Fln Alignment:

sp_v1.1_unigene279___SSASGKPPQATEGGRRRQRLILQENSDDEDDFPARVEMQESPKKELQFYTNASVAKMDTHHAKEITSGKQVEMTNNIVAGQPVRKSTRIPKKRILXXXXXXXXXXXXASQRKISRNTKKRVPVGXXXXXXXXXXTSQRRSLRMPKKRMVXXXXXXXXXXXXIQQHKRRLKRSKYERDSEDLYQXXXXXXXXXXXXXXXXXXXXXXGKKKRSRRKQEVGNSTFDDKKEAPLTARQRAMQSCKDVDSEVGANLIEFPEGLPQTSQRKRKEKLSEVEQQLKKAEAAQRRKMQVEKAANEIQAEAIKKILGQDSLRKKREDKLRKQRDEMAQEKAASAMMLASNSVRWVMGPSGTVVSFSENTGLPSIFNSGPCRYPPPREKCAGPLCNNTYKYRDSKSKLPLCSLQCYRAIHDVTHTVS
C0PS52_____________TTASAKPPRTSEGVQRRQRLI----------------LQENSDDEDDFSPNTE---------QRFQESPKHSLTIKIRAA--VRHSDSTVKEDI--------------RSKSLDGGIFRRIDTTNGSPPLQPV----RKSSRIPKKYVPEDEYVEDEEDYEAPQSKRKLKS---ERGLEELYQDDDDDKGPPSSNEDSESSDSEIDDVKR--RKVDSPSSIVDSKKEVPLTARQRAVQFSRTVP-EARESLIEFPDGLPHFSQRKRQEKIPEFEQQLKKADAAQRRRMQAEKAAQKIQDDAIKKILGQDTLKQKREEKLRRQRDEMAQEKRDAAKTIAPNTIRWVIGPSGTVVSFSEDAEFLGIFNSVPCRYPPAREKCAGPSCNNTYKYRDSKSNLPLCSLLCYRAIHDMAQPLS

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
360		22		77	0.999999
422	14		85		0.993533
563		60		40	1.0
797		50		50	1.0
810		87	12		0.992554
812		87	12		0.992554
866	14			85	0.993533
1063	16		83		0.994512
1135	83		16		0.994512
1136			20	80	0.995493
1245	85		14		0.993533
1298	83		16		0.994512
1322	85			14	0.993533
1324	85		14		0.993533
1597	88			11	0.923564
1598	88		11		0.923564
1599	88		11		0.923564
1600			11	88	0.923564
1607	88		11		0.923564
1615	11	88			0.923564
1699	14	85			0.993533
1700		14		85	0.993533
1701	83		16		0.994512
1702	83		16		0.994512
1735			83	16	0.994512
1756	80		20		0.995493
1770	16			16	0.988813
1771	16			83	0.994512
1774	16	83			0.994512
1832		16		83	0.994512
1834	88		11		0.923564
1835	88		11		0.923564
1897	87		12		0.992554
1915	87		12		0.992554
1958	85			14	0.993533
2368	83		16		0.994512
2446		14		85	0.993533
2471	87			12	0.992554
2507	87			12	0.992554
2512	87			12	0.992554
2513		12	87		0.992554
2626	25	75			1.0
2656			87	12	0.999964
2808	14			85	0.993533
2874	90			10	0.90298
2876	90		10		0.90298
3058		9	90		0.999872
3118	92		8		0.999718
3341	14		85		0.993533
3343	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain