SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene275

Length: 979 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene275

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Picea sitchensis RepID=B8LMJ3_PICSI	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	ubiquitin-conjugating enzyme e2 e3	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	79%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	79%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin-conjugating enzyme, E2	IPR000608	-	79%
Blast2go	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	79%
Blast2go	Ubiquitin-conjugating enzyme, active site	IPR023313	-	79%

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
128	88			11	0.923564
286	20		80		0.995493
562	85			14	0.993533
567	85			14	0.993533
568			14	85	0.993533
570		14	85		0.993533
577	85		14		0.993533
578		14		85	0.993533
582	85			14	0.993533
585	85	14			0.993533
586			85	14	0.993533
587		14	85		0.993533
588	14	85			0.993533
822	25		75		0.996473
893			20	80	0.995493
894		80	20		0.995493
895			20	80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
698	709	GA GA GA GA GA GA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain