SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene269

Length: 2016 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene269
CGTCGTGACCTTGGCTGTCACTCATTCTTTGTCATTAACAGTCATATTGTGTAGTCCTTCATTGTTTAGAGCCGATTGATCCATATTTGTTAAGAACAATGAAGATTCTGTACTTCTGAATATTTATACAAATGCTGGAGCTCAAGTATTGATTGCATCGGAGACAACCCATCTATTAAATAGACTGTGAATGTGCCAGCGGACCTTCGCCTCGCTTGAATTTTTTCGTTTAGCAGTTGAGTCTGAGTCCGATTTGGAAGAAAGCCGAGGAGGATGGCAGTCGCAAATCCTGGTCAGCTGAATCTGCAGGAGGCGCCCTCATGGGGTTCTCGCAGCGTCAATTGCTTTGAAAAGCTTGAACAGATTGGAGAAGGCACATATGGGCAAGTTTACATGGCCAAGGAGATCGAGACTGGGGAAATTGTTGCCCTGAAGAAAATTCGTATGGACAATGAAAGAGAAGGGTTCCCAATAACCGCCATTCGGGAAATCAAGCTTCTGAAGAAGTTGCAGCATGAAAATGTTATCAAGTTAAAGGAAATTGTGACCTCTCCAGGTCCTGAGAAGGATGAACAAGGGAAATCAGATGGTAATAAGTACAATGGAAGCATTTACATGGTCTTTGAATATATGGATCATGATCTGACTGGTTTAGCTGAGAGACCAGGAATGCGCTTTAGTGTTCCGCAGATTAAGTGTTACATGAAGCAATTGTTAATCGGGCTGCACTATTGTCATATCAACCAAGTTTTGCATCGGGACATCAAAGGATCTAATCTGCTGATTGATAATAATGGGATCCTAAAGCTTGCCGATTTTGGCCTGGCAAGATCATTCTGCAGTGACCAGAATGGAAACCTGACCAATAGAGTAATAACATTGTGGTATAGGCCCCCAGAGTTGCTGCTGGGCTCAACAAAATATGGTCCAGCTGTTGACATGTGGTCAGTGGGATGTATATTTGCGGAGCTTTTATATGGAAAACCTATTTTACCAGGAAAGAATGAGCCAGAGCAACTCACTAAAATTTTTGAGCTTTGTGGATCACCGGATGAGTCCAACTGGCCGGGTGTTTCCAAGCTTCCATGGTACAGCAATTTCAAGCCACAAAGGCAAATGAAGAGGCGTGTTAGGGAATCTTTTAAAAATTTTGACAGACATGCTTTGGATCTTGTGGAAAAAATGCTCACTTTGGATCCTAGTCAGAGAATAAGTGCAAAGGATGCACTTGATGCTGAATATTTCTGGACAGATCCAGTTCCTTGTGCACCAAGCAGCTTGCCAAGGTATGAACCATCACATGATTTTCAAACAAAGAGGAAACGGCAGCAACAAAGGCAACATGATGAAATGACCAAGAGACAGAAAATTTCACAGCATCCTCCACAACAGCATGTTAGACTACCTCCTATACAAAATGCTGGACAAGGTCATCTTCCTCTAAGGCCAGGTCCAAATCCAACTATGCATAATCCACCTCCTCAGTTTCCAGTTGGACCTAGTCATTATACGGGAGGACCTAGGGGAGCTGGTGGACAGAATAGGCATCCTCAGAATATACGCCCACTCCATGCAGCTCAAGGGGGAGGATATAATGCAAATCGAGGATATGGGGGCCCTCCTCAACAGCAAGGAGGAGGATATCCCCCACATGGGATGGGAAATCAAGGACCAAGAGGTGGACAATTTGGGGGTAGAGGTGCAGGCTATTCTCAAGGAGGTCCTTATGGTGGACCTGTTGGGGGCCGAGGTCCAAATGTTGGTGGAGGCAATCGAGGTCCACAGTTTTGGTCGGAACAGTGAATCGGTTGTGGAGTACACATTTAGCTTGCATGTGATACTATTAAATGCAAATGTCTTTAGTTTGAAATTGTTAAATCATCCGAGCATGGCCGGATACACCTTTATAAATTCAGGAATTAATCACTTGCTCAGTATGTTTTGCTCACCACTACAGCAAAGCTACATTTTTTCTTACATCTAAGATTTTTCTTCTTTTTAGCGGGGTTACAAACC

Ace file of the UniGene sp_v1.1_unigene269

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative (EC:2.7.11.23)	-	-	76%
FL-Next	sp=Cyclin-dependent kinase C-2; Oryza sativa subsp. japonica (Rice).	-	-	80%
Blast2go	atp binding	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	leaf development	GO:0048366	Biological Process	86%
Blast2go	response to virus	GO:0009615	Biological Process	86%
Blast2go	kinase activity	GO:0016301	Molecular Function	86%
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	cytosol	GO:0005829	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	86%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	86%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	86%
Blast2go	Protein kinase-like domain	IPR011009	-	86%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	86%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	86%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q5JK68

Fln msg:

Fln protein: MAVANPGQLNLQEAPSWGSRSVNCFEKLEQIGEGTYGQVYMAKEIETGEIVALKKIRMDNEREGFPITAIREIKLLKKLQHENVIKLKEIVTSPGPEKDEQGKSDGNKYNGSIYMVFEYMDHDLTGLAERPGMRFSVPQIKCYMKQLLIGLHYCHINQVLHRDIKGSNLLIDNNGILKLADFGLARSFCSDQNGNLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLYGKPILPGKNEPEQLTKIFELCGSPDESNWPGVSKLPWYSNFKPQRQMKRRVRESFKNFDRHALDLVEKMLTLDPSQRISAKDALDAEYFWTDPVPCAPSSLPRYEPSHDFQTKRKRQQQRQHDEMTKRQKISQHPPQQHVRLPPIQNAGQGHLPLRPGPNPTMHNPPPQFPVGPSHYTGGPRGAGGQNRHPQNIRPLHAAQGGGYNANRGYGGPPQQQGGGYPPHGMGNQGPRGGQFGGRGAGYSQGGPYGGPVGGRGPNVGGGNRGPQFWSEQ*

Protein Length: 511

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTTGTCATTAACAGTCATATTGTGTAGTCCTTCATTGTTTAGAGCCGATTGATCCATATTTGTTAAGAACAATGAAGATTCTGTACTTCTGAATATTTATACAAATGCTGGAGCTCAAGTATTGATTGCATCGGAGACAACCCATCTATTAAATAGACTGTGAATGTGCCAGCGGACCTTCGCCTCGCTTGAATTTTTTCGTTTAGCAGTTGAGTCTGAGTCCGATTTGGAAGAAAGCCGAGGAGG_-_ATGGCAGTCGCAAATCCTGGTCAGCTGAATCTGCAGGAGGCGCCCTCATGGGGTTCTCGCAGCGTCAATTGCTTTGAAAAGCTTGAACAGATTGGAGAAGGCACATATGGGCAAGTTTACATGGCCAAGGAGATCGAGACTGGGGAAATTGTTGCCCTGAAGAAAATTCGTATGGACAATGAAAGAGAAGGGTTCCCAATAACCGCCATTCGGGAAATCAAGCTTCTGAAGAAGTTGCAGCATGAAAATGTTATCAAGTTAAAGGAAATTGTGACCTCTCCAGGTCCTGAGAAGGATGAACAAGGGAAATCAGATGGTAATAAGTACAATGGAAGCATTTACATGGTCTTTGAATATATGGATCATGATCTGACTGGTTTAGCTGAGAGACCAGGAATGCGCTTTAGTGTTCCGCAGATTAAGTGTTACATGAAGCAATTGTTAATCGGGCTGCACTATTGTCATATCAACCAAGTTTTGCATCGGGACATCAAAGGATCTAATCTGCTGATTGATAATAATGGGATCCTAAAGCTTGCCGATTTTGGCCTGGCAAGATCATTCTGCAGTGACCAGAATGGAAACCTGACCAATAGAGTAATAACATTGTGGTATAGGCCCCCAGAGTTGCTGCTGGGCTCAACAAAATATGGTCCAGCTGTTGACATGTGGTCAGTGGGATGTATATTTGCGGAGCTTTTATATGGAAAACCTATTTTACCAGGAAAGAATGAGCCAGAGCAACTCACTAAAATTTTTGAGCTTTGTGGATCACCGGATGAGTCCAACTGGCCGGGTGTTTCCAAGCTTCCATGGTACAGCAATTTCAAGCCACAAAGGCAAATGAAGAGGCGTGTTAGGGAATCTTTTAAAAATTTTGACAGACATGCTTTGGATCTTGTGGAAAAAATGCTCACTTTGGATCCTAGTCAGAGAATAAGTGCAAAGGATGCACTTGATGCTGAATATTTCTGGACAGATCCAGTTCCTTGTGCACCAAGCAGCTTGCCAAGGTATGAACCATCACATGATTTTCAAACAAAGAGGAAACGGCAGCAACAAAGGCAACATGATGAAATGACCAAGAGACAGAAAATTTCACAGCATCCTCCACAACAGCATGTTAGACTACCTCCTATACAAAATGCTGGACAAGGTCATCTTCCTCTAAGGCCAGGTCCAAATCCAACTATGCATAATCCACCTCCTCAGTTTCCAGTTGGACCTAGTCATTATACGGGAGGACCTAGGGGAGCTGGTGGACAGAATAGGCATCCTCAGAATATACGCCCACTCCATGCAGCTCAAGGGGGAGGATATAATGCAAATCGAGGATATGGGGGCCCTCCTCAACAGCAAGGAGGAGGATATCCCCCACATGGGATGGGAAATCAAGGACCAAGAGGTGGACAATTTGGGGGTAGAGGTGCAGGCTATTCTCAAGGAGGTCCTTATGGTGGACCTGTTGGGGGCCGAGGTCCAAATGTTGGTGGAGGCAATCGAGGTCCACAGTTTTGGTCGGAACAGTGA___ATCGGTTGTGGAGTACACATTTAGCTTGCATGTGATACTATTAAATGCAAATGTCTTTAGTTTGAAATTGTTAAATCATCCGAGCATGGCCGGATACACCTTTATAAATTCAGGAATTAATCACTTGCTCAGTATGTTTTGCTCACCACTACAGCAAAGCTACATTTTTTCTTACATCTAAGATTTTTCTTCTTTTTAGCGGGGTTACAAACC

Fln Alignment:

sp_v1.1_unigene269___MAVANPGQLNLQEAPSWGSRSVNCFEKLEQIGEGTYGQVYMAKEIETGEIVALKKIRMDNEREGFPITAIREIKLLKKLQHENVIKLKEIVTSPGPEKDEQGKS-DGNKYNGSIYMVFEYMDHDLTGLAERPGMRFSVPQIKCYMKQLLIGLHYCHINQVLHRDIKGSNLLIDNNGILKLADFGLARSFCSDQNGNLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLYGKPILPGKNEPEQLTKIFELCGSPDESNWPGVSKLPWYSNFKPQRQMKRRVRESFKNFDRHALDLVEKMLTLDPSQRISAKDALDAEYFWTDPVPCAPSSLPRYEPSHDFXXXXXXXXXXXHDEMTKRQKISQHPPQQHVRLPPIQNAGQGHLPLRXXXXXXXXXXXXXXXVGPSHYTGGPRGAGGQNRHPQ
Q5JK68_____________MAVAAPGQLNLDESPSWGSRSVDCFEKLEQIGEGTYGQVYMAKETETNEIVALKKIRMDNEREGFPITAIREIKILKKLHHQNVIQLKEIVTSPGPERDEQGKPIEGNKYKGSIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSSDHNGNLTNRVITLWYRPPELLLGSTRYGPAVDMWSVGCIFAELLNGKPILTGKNEPEQLSKIFELCGTPDELIWPGVTKMPWYNNFKPQRPMKRRVKESFKHFDQHALDLLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQAEEAAKRQKL-QHPP-PHSRLPPIQNPGQPH----QIRPGQPMHNAPPVAAGPSHHYAKPRGPGGPNRYPQ

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
622	33	66			1.0
667	83		16		0.994512
688		40	60		1.0
703		50		50	1.0
788	87	12			0.992554
789		12		87	0.992554
791			14	14	0.984337
794	87	12			0.992554
796	87		12		0.992554
797	87			12	0.992554
798		12		87	0.992554
800	87	12			0.992554
802		12	87		0.992554
803	12		87		0.992554
916	44		55		1.0
977		87		12	0.992554
982	87			12	0.992554
1016		85	14		0.993533
1017		85		14	0.993533
1018	85			14	0.993533
1019	14		85		0.993533
1478	88		11		0.923564
1480			11	88	0.923564
1481		88		11	0.923564
1482		88	11		0.923564
1485		88	11		0.923564
1486			11	88	0.923564
1925	90	10			0.999898
1956	45	51	3		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain