SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene259

Length: 3363 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene259
CGTCGTGACCTTGGCTGTCACTCAATTATGTACTTCCTTCTATGGTTATACTATTGGGACCAAGCCCAAACACACGCAATTAGATGACGCTATTTTGCCTGCGTACTTAGCACCGAAAGATTATTAAAGCAGCGCCCATTGTCTTTATGATTATTCTTCCGCCATTCGTCACGCTGTAATCGTTTGATATTCTCTTCGTCACGCTGCTCGGCTCAGCGTTCTGCAAAGCGAATCAGAGCAATGGGGGCGGATTTTGAGCCATATCGTCTACGATGTGAGCTCCGAGGTCACGAAGAAGACGTTCGTGGAATATGCATCTGTGGGGACAGTGGCATTGCCACAGGTTCAAGAGACAAGACTGTACGTTTTTGGTGTGTTGATGAAACAGAAAAAAGCAGATACACATTGTCAAAAACAATGGTGGGGCACAAAAGCTTTGTGGGACCTTTGGCCTGGATACCTGCTAATGAACGGTTTCCTGAAGGAGGGATCGTGTCAGGAGGAATGGATACTCTTGTCTTTGTATGGGATTTGAGCACAGGACAAGCAGTCCAGACCATGAAGGGCCATCAATTACAGGTCACAGGTGTTACTTTGGATGACCAGGGTGACATTCTATCTTCATCAATTGACTGCACTGTGAGGAGGTGGAGGAATGGGGATACTGTTGAATCCTGGCCGGCTCATCAAGCACCCATTCAGGCAATCTTGAAGTTACCTTCTGGAGAAGTTGCTACAGGCCTCAACTGATACCACTGTGAAGCTCTGGAGCGGTTCAAAATGTCTTCATACTTTTATAGGACACACAGATACGGTTCGTGGATTGGGACTGATGCCAAATGTAGGAATTCTCTCTGCTTCCCATGATGGCTCTATAAGGTTATGGGCACTCTCAGGAGAGTCATTAGTGGAGATGGTTGGACATACTTCTCTTGTTTATTCTGTAGCTGCGCATTCTTCAGGAGTTATTGCATCTGGTAGTGAAGACCGCTACACAAAGTTGTGGAGAGATGCAACATGCATTCAAAGCATTGAGCATCCTGGCTGTGTGTGGGATGTAAAATTCTTGCCAAATGGAGATCTTGTTACTGCGTGTTCTGATGGAGTTGTAAGGATATGGACAACAGATGCGGATAGAATGGCAGGAACACCTGAATTAGATGCCTTTGAGGCACAACTTTCTTTCTACAAGTCCAACACGAAAACGGTGGGAGGCATAAAAGTATCTGAGTTGCCCGGGTTGGAGGCTCTCCAGCAGCCTGGAACAAAGAATGGGCAAACGAAAGTCATTCGTGAAGGCGATACTGGAGTTGCTTATTCTTGGAATTCAACAGAGTACAAATGGGATAAAATTGGTGAAGTAGTGGATGGGCCTGACGATTTACAAGGGCGTAAAAAACTTGATGGTGTTGCATATGACTATGTATTTGATGTGGATATTGAAGATGGTGAACCCATTAGGAAGCTGCCATACAACCGTGGAGATAATCCCTACTTTGTTGCAGAACAATGGCTTTTGAAAGAAGGGCTTCCACTAACATATAGGGAACAGATTGTACAATTTATTTTGCAAAATACAGGGCAGGCAAATGTTCCATTGGACAATTCATTTGTTGATCCTTATACTGGTGCAAATGCTTATATGCCTGGACAGCCATCTTCATTTACGTCAGGTAGTCCCCCTGAAAAATATAACTTCAAGTATATTCCAAAGAGGGGAATGCTTTATTTTGACACAGCACAGTTTGATGGTATTCTTCGAAAGATTTCAGAATTCAATAATGCAATGACATCAGATGAGGGACAGCGACCACTTTCACTAAACGATGCAGAATCAATGCGACTTAATGCCATTGTGGCAATATTAAAAGACACTTCTCATTATCACACTAGTGCTTTTGCTGACACTGATATGAATATTTTAATCAAGATGCTTACTTCCTGGCCCGTTCAAATGTTATTTCCAGTGTTTGACATTGTGAAAATGATGATTTATCATCCGCATGGGGCAAACCTATTTGTCAACTGTTTGCAGAGTGGAAATGATTTTCTTATGGACGCTTTTAGGAGGGCTACAACTGCACCTGCTTTGGCTGCAAATCAGTTAACAAGTATTCGGGCAGTTGTAAATGCCTTTAGGCATGCATGTTTTAAAACATGGCTGGTTCATCATCGCAGTGAGATTCTTGACCTTTTTTCGGAGTGTTGTTCATCCTCAAACAAGAATATTCGGCTGTCATACTCTACCTTGATTCTGAACTATACAGTGTTACTAATTGATTCAAAAGATGAAGATGGTCAACAGCAAGTTCTTTCAGCTGCTATGGAGCTGGGAGATGCACAAGAACATGAAGTGGATGTAAGGTTCAGGGCACTTGTGGCAATTGGAACTCTTATGCTTGATGGACTGGTAAAACATCAAGCAATTCAATTGGATGCCAAAAGCATTGCTGAATCTGCAAAAAGTTCAAAGGAAGCCAAGATTGCAGAAGTTGGAGCAGATATTGAGCATCTGATCAAATCAGTGTGACATCATTTTGGATATAAAGATGATCTGTTAAAAATTATGATCATGATTTGTTTTTGCAATTTTGCACAGCTGAAGCCAATTTTGTTAAACGTTATATACAGCGTTGCATTAATATTTAGTGCCTTCAATTTATTGTCAATTTCTGGCAGAGAACTGCATGCGAATCCTCACAGAATATAATATTCTTGAGGTTGCATCCCGTCTATTGTTGGTCACAACTTATATCATTGTGGGTTAGCTATAAAATAAGTTCTATATTAGGTAGCCTCTTTTTTAAAATCTAGATGCAAGTTAACTATTCATTCCTTTTTAGGTAACTGCAATTAAGTGCTAGCAATTATTATGGGTCTTCGACATTCAAATGAATGAAATCCTTCAACATTATCAAGTGATTCATTTAATGGTCTTCTGTTTGCCATTCTGCCCTTAAATAAATCATAGATTATTGTAAGAATCGCAGCTTCAAATTCTTCCAAGAATTAATGATGACCTTAAACTCTATGAAGACGAATTTTCATGTTGACGGTACACTCCTGAACTAATTGTATCGTCAAGCATGTTTCTTTTCCACGTGGAATATGCTTAGAATAGCATTAAACCTAGAGTTTAATAGTTTGGCAGGTTTTAAATCCTGCTACTAAACGATAATGAATTATGATACCACGCAAAATCTTGATTTAAATTTCTACGTGTTTATTTTAGCAAGTTTAGAATATAACCTTGCCCTTAGAGATCATTTTAAATGTCAGAAGTTCGGACTAAGTTATTTCATGCATTCATGTACACTGAACTATTTTAGCAAGTTTAGAATATAACCTTGCTCTTAGAGATAC

Ace file of the UniGene sp_v1.1_unigene259 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	31%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	67%
Blast2go	phospholipase a-2-activating	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	69%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	69%
Blast2go	PUL	IPR013535	-	69%
Blast2go	PLAA family ubiquitin binding, PFU	IPR015155	-	69%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	69%
Blast2go	WD40-repeat-containing domain	IPR017986	-	69%
Blast2go	WD40 repeat, subgroup	IPR019781	-	69%
Blast2go	WD40 repeat 2	IPR019782	-	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7TPX5

Fln msg: Overlapping hits, possible frame ERROR between 741 and 728,

Fln protein: MGADFEPYRLRCELRGHEEDVRGICICGDSGIATGSRDKTVRFWCVDETEKSRYTLSKTMVGHKSFVGPLAWIPANERFPEGGIVSGGMDTLVFVWDLSTGQAVQTMKGHQLQVTGVTLDDQGDILSSSIDCTVRRWRNGDTVESWPAHQAPIQAILKLPSGxxxxxxSTDTTVKLWSGSKCLHTFIGHTDTVRGLGLMPNVGILSASHDGSIRLWALSGESLVEMVGHTSLVYSVAAHSSGVIASGSEDRYTKLWRDATCIQSIEHPGCVWDVKFLPNGDLVTACSDGVVRIWTTDADRMAGTPELDAFEAQLSFYKSNTKTVGGIKVSELPGLEALQQPGTKNGQTKVIREGDTGVAYSWNSTEYKWDKIGEVVDGPDDLQGRKKLDGVAYDYVFDVDIEDGEPIRKLPYNRGDNPYFVAEQWLLKEGLPLTYREQIVQFILQNTGQANVPLDNSFVDPYTGANAYMPGQPSSFTSGSPPEKYNFKYIPKRGMLYFDTAQFDGILRKISEFNNAMTSDEGQRPLSLNDAESMRLNAIVAILKDTSHYHTSAFADTDMNILIKMLTSWPVQMLFPVFDIVKMMIYHPHGANLFVNCLQSGNDFLMDAFRRATTAPALAANQLTSIRAVVNAFRHACFKTWLVHHRSEILDLFSECCSSSNKNIRLSYSTLILNYTVLLIDSKDEDGQQQVLSAAMELGDAQEHEVDVRFRALVAIGTLMLDGLVKHQAIQLDAKSIAESAKSSKEAKIAEVGADIEHLIKSV*

Protein Length: 765

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATGTACTTCCTTCTATGGTTATACTATTGGGACCAAGCCCAAACACACGCAATTAGATGACGCTATTTTGCCTGCGTACTTAGCACCGAAAGATTATTAAAGCAGCGCCCATTGTCTTTATGATTATTCTTCCGCCATTCGTCACGCTGTAATCGTTTGATATTCTCTTCGTCACGCTGCTCGGCTCAGCGTTCTGCAAAGCGAATCAGAGCA_-_ATGGGGGCGGATTTTGAGCCATATCGTCTACGATGTGAGCTCCGAGGTCACGAAGAAGACGTTCGTGGAATATGCATCTGTGGGGACAGTGGCATTGCCACAGGTTCAAGAGACAAGACTGTACGTTTTTGGTGTGTTGATGAAACAGAAAAAAGCAGATACACATTGTCAAAAACAATGGTGGGGCACAAAAGCTTTGTGGGACCTTTGGCCTGGATACCTGCTAATGAACGGTTTCCTGAAGGAGGGATCGTGTCAGGAGGAATGGATACTCTTGTCTTTGTATGGGATTTGAGCACAGGACAAGCAGTCCAGACCATGAAGGGCCATCAATTACAGGTCACAGGTGTTACTTTGGATGACCAGGGTGACATTCTATCTTCATCAATTGACTGCACTGTGAGGAGGTGGAGGAATGGGGATACTGTTGAATCCTGGCCGGCTCATCAAGCACCCATTCAGGCAATCTTGAAGTTACCTTCTGGAxxxxxxxxxxxxxxxxxxTCAACTGATACCACTGTGAAGCTCTGGAGCGGTTCAAAATGTCTTCATACTTTTATAGGACACACAGATACGGTTCGTGGATTGGGACTGATGCCAAATGTAGGAATTCTCTCTGCTTCCCATGATGGCTCTATAAGGTTATGGGCACTCTCAGGAGAGTCATTAGTGGAGATGGTTGGACATACTTCTCTTGTTTATTCTGTAGCTGCGCATTCTTCAGGAGTTATTGCATCTGGTAGTGAAGACCGCTACACAAAGTTGTGGAGAGATGCAACATGCATTCAAAGCATTGAGCATCCTGGCTGTGTGTGGGATGTAAAATTCTTGCCAAATGGAGATCTTGTTACTGCGTGTTCTGATGGAGTTGTAAGGATATGGACAACAGATGCGGATAGAATGGCAGGAACACCTGAATTAGATGCCTTTGAGGCACAACTTTCTTTCTACAAGTCCAACACGAAAACGGTGGGAGGCATAAAAGTATCTGAGTTGCCCGGGTTGGAGGCTCTCCAGCAGCCTGGAACAAAGAATGGGCAAACGAAAGTCATTCGTGAAGGCGATACTGGAGTTGCTTATTCTTGGAATTCAACAGAGTACAAATGGGATAAAATTGGTGAAGTAGTGGATGGGCCTGACGATTTACAAGGGCGTAAAAAACTTGATGGTGTTGCATATGACTATGTATTTGATGTGGATATTGAAGATGGTGAACCCATTAGGAAGCTGCCATACAACCGTGGAGATAATCCCTACTTTGTTGCAGAACAATGGCTTTTGAAAGAAGGGCTTCCACTAACATATAGGGAACAGATTGTACAATTTATTTTGCAAAATACAGGGCAGGCAAATGTTCCATTGGACAATTCATTTGTTGATCCTTATACTGGTGCAAATGCTTATATGCCTGGACAGCCATCTTCATTTACGTCAGGTAGTCCCCCTGAAAAATATAACTTCAAGTATATTCCAAAGAGGGGAATGCTTTATTTTGACACAGCACAGTTTGATGGTATTCTTCGAAAGATTTCAGAATTCAATAATGCAATGACATCAGATGAGGGACAGCGACCACTTTCACTAAACGATGCAGAATCAATGCGACTTAATGCCATTGTGGCAATATTAAAAGACACTTCTCATTATCACACTAGTGCTTTTGCTGACACTGATATGAATATTTTAATCAAGATGCTTACTTCCTGGCCCGTTCAAATGTTATTTCCAGTGTTTGACATTGTGAAAATGATGATTTATCATCCGCATGGGGCAAACCTATTTGTCAACTGTTTGCAGAGTGGAAATGATTTTCTTATGGACGCTTTTAGGAGGGCTACAACTGCACCTGCTTTGGCTGCAAATCAGTTAACAAGTATTCGGGCAGTTGTAAATGCCTTTAGGCATGCATGTTTTAAAACATGGCTGGTTCATCATCGCAGTGAGATTCTTGACCTTTTTTCGGAGTGTTGTTCATCCTCAAACAAGAATATTCGGCTGTCATACTCTACCTTGATTCTGAACTATACAGTGTTACTAATTGATTCAAAAGATGAAGATGGTCAACAGCAAGTTCTTTCAGCTGCTATGGAGCTGGGAGATGCACAAGAACATGAAGTGGATGTAAGGTTCAGGGCACTTGTGGCAATTGGAACTCTTATGCTTGATGGACTGGTAAAACATCAAGCAATTCAATTGGATGCCAAAAGCATTGCTGAATCTGCAAAAAGTTCAAAGGAAGCCAAGATTGCAGAAGTTGGAGCAGATATTGAGCATCTGATCAAATCAGTGTGA___CATCATTTTGGATATAAAGATGATCTGTTAAAAATTATGATCATGATTTGTTTTTGCAATTTTGCACAGCTGAAGCCAATTTTGTTAAACGTTATATACAGCGTTGCATTAATATTTAGTGCCTTCAATTTATTGTCAATTTCTGGCAGAGAACTGCATGCGAATCCTCACAGAATATAATATTCTTGAGGTTGCATCCCGTCTATTGTTGGTCACAACTTATATCATTGTGGGTTAGCTATAAAATAAGTTCTATATTAGGTAGCCTCTTTTTTAAAATCTAGATGCAAGTTAACTATTCATTCCTTTTTAGGTAACTGCAATTAAGTGCTAGCAATTATTATGGGTCTTCGACATTCAAATGAATGAAATCCTTCAACATTATCAAGTGATTCATTTAATGGTCTTCTGTTTGCCATTCTGCCCTTAAATAAATCATAGATTATTGTAAGAATCGCAGCTTCAAATTCTTCCAAGAATTAATGATGACCTTAAACTCTATGAAGACGAATTTTCATGTTGACGGTACACTCCTGAACTAATTGTATCGTCAAGCATGTTTCTTTTCCACGTGGAATATGCTTAGAATAGCATTAAACCTAGAGTTTAATAGTTTGGCAGGTTTTAAATCCTGCTACTAAACGATAATGAATTATGATACCACGCAAAATCTTGATTTAAATTTCTACGTGTTTATTTTAGCAAGTTTAGAATATAACCTTGCCCTTAGAGATCATTTTAAATGTCAGAAGTTCGGACTAAGTTATTTCATGCATTCATGTACACTGAACTATTTTAGCAAGTTTAGAATATAACCTTGCTCTTAGAGATAC

Fln Alignment:

sp_v1.1_unigene259___MGADFEPYRLRCELRGHEEDVRGICICGDSGIATGSRDKTVRFWCVDETEKSRYTLSKTMVGHKSFVGPLAWIPANERFPEGGIVSGGMDTLVFVWDLSTGQAVQTMKGHQLQVTGVTLDDQGDILSSSIDCTVRRWRNGDTVESWPAHQAPIQAILKLPSGxxxxxSTDTTVKLWSGSKCLHTFIGHTDTVRGLGLMPNVGILSASHDGSIRLWALSGESLVEMVGHTSLVYSVAAHSSGVIASGSEDRYTKLWRDATCIQSIEHPGCVWDVKFLPNGDLVTACSDGVVRIWTTDADRMAGTPELDAFEAQLSFYKSNTKTVGGIKVSELPGLEALQQPGTKNGQTKVIREGDTGVAYSWNSTEYKWDKIGEVVDGPDDLQGRKKLDGVAYDYVFDVDIEDGEPIRKLPYNRGDNPYFVAEQWLLKEGLPLTYREQIVQFILQNTGQANVPLDNSFVDPYTGANAYMPGQPSSFTSGSPPEKYNFKYIPKRGMLYFDTAQFDGILRKISEFNNAMTSDEGQRPLSLNDAESMRLNAIVAILKDTSHYHTSAFADTDMNILIKMLTSWPVQMLFPVFDIVKMMIYHPHGANLFVNCLQSGNDFLMDAFRRATTAPALAANQLTSIRAVVNAFRHACFKTWLVHHRSEILDLFSECCSSSNKNIRLSYSTLILNYTVLLIDSKDEDGQQQVLSAAMELGDAQEHEVDVRFRALVAIGTLMLDGLVKHQAIQLDXXXXXXXXXXXXXXXXXEVGADIEHLIK
D7TPX5_____________MEIDSAEYQLSCELRGHEDDVRGICICGNAGIATSSRDRTVRFWTLDPSDKRNYTAWKILLGHTSFVGPLAWIAPNEEFPEGGIVSGGMDTLVMVWDLKTGERIHTLKGHQLQVTGVALDD-SDVVSSSVDCTLRRWRKGKAVEFWEAHKAAIQAVIKLPSNxxxxxSSDTTLKLWRGQNCIQTFVGHTDTVRGLAVMPDLGVLSASHDGSIRLWALTGETLMEMVGHTSIVYSVDSHASGLIVSGSEDCFAKIWKDGVCVQSIEHPGCVWDTKFLENGDVVTACSDGVVRIWTVQQDRIANSVELESYFSRLSQFKISRKRVGGLKLEDLPGLEALQIPGTSDGQTIVVREGDNGMAYSWNLREQKWDKIGEVVDGPDDTMARPVLDGIQYDYVFDVDIGDGEPIRKLPYNRSDNPYSTADKWLLKENLPLSYRQQVVEFILQNSGQKNFALDTSYRDPYTGANAYVPGESSN--KSAVPVKPSFKHIPKKGILVFDAAQFDGILKKISEFNNALISDPEKKSLSLTEVEISRLVAVVKILKETSRYHSSTFADVDIALMLKLLKSWPIAMIFPVIDILRMIILHPDGAIRLLKLLEDENDVLMDMIKKITVSPALAANLLTSIRAVCNLFKNSCYSNWLLNHRSEILDAFSSCNSSSNKNVLLSYSTLLLNYAVFLIEKKDQEGQSHVLSAVLEIAEGENLDVDSKYRALVAIGTLMLEGSVKKIALDFDVESIAKAAKVSKDAKVAEVGADIELLTK

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
2207	88		11		0.923564
2237		88		11	0.923564
2403	87		12		0.992554
2432	87		12		0.992554
2434	87		12		0.992554
2435		87		12	0.992554
2436	87		12		0.992554
2438		12	87		0.992554
2442	87	12			0.992554
2443		12	87		0.992554
2444	12			87	0.992554
2446			12	87	0.992554
2451	87		12		0.992554
2454		87	12		0.992554
2457		85	14		0.993533
2459	16	83			0.994512
2463		16		83	0.994512
2466			16	83	0.994512
2468	83			16	0.994512
2470	16			83	0.994512
2472			16	83	0.994512
2473	16	83			0.994512
2621	60		40		1.0
2622	40			60	1.0
2626		40		60	1.0
2627		40		60	1.0
2628	40		60		1.0
2632		20	20	40	1.0
2634	33	50			1.0
2635		16		83	0.994512
2637	33			66	1.0
2638	66	33			1.0
2715		80		20	0.995493
2804		14		85	0.993533
2813	85	14			0.993533
2814		14		85	0.993533
2815		14	85		0.993533
2816	14		85		0.993533
3223	60	20			0.99255
3224	60	20		20	0.99255
3225		20	20	60	0.99255
3226	20	80			0.995493
3227	80		20		0.995493
3230	80			20	0.995493
3231	75	25			0.996473
3234	75	25			0.996473
3241			75	25	0.996473
3243	25		75		0.996473
3245			25	75	0.996473
3246	25		75		0.996473
3248			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain