SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene253

Length: 2738 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene253
ATGGGGGAATGAGCAAATAAATCACAAAGCGTCGTGACCTTGGCTGTCACTCTTCCAACACCATTGTTGGGCATCCCGCTGCAACTAGACAGCAGTATCTAGCTGCAACTAGAGCAGCAGTACCTAACGATGGCCATGTCACTACAATTGCAACTACTACATGGCTCTCAATCCTTTCAATCTCTACCTGAAAACCATCCCCACCATGGATTTCAAAGACTATTTCTCGGAAAAAATTTATTTGGCAAATCTCTGTTTAAGTCTAGCGTTATTAAAAGTTCTTCGAAGAGTGTGGATGCTGGGAAACACCACAAACAGTTGAAGCTGAGTACCAGATGTTCAGTCTCAACGACAGAGCCTTCGACAGCTGAAAATCAAAAAAAGAATCAGCTGAAAGCAAGGAGAGATGTAAGAAACATAGCAATTGTTGCTCATGTAGATCATGGGAAGACAACTTTAGTGGATGCAATGTTAAAGCAAGCCAAGGTGTTTCGTGTCAATCAATCTGTTCAAGAAAGAATTATGGACTCCAATGCACTGGAGAGAGAGCGGGGCATAACAATACTCAGCAAGAATACAGCAATATGCTACAAGGATACAAAGATTAACATCATTGATACTCCAGGTCATTCAGACTTTGGAGGGGAAGTGGAACGTGTGCTTAACATGGTGGAAGGTGTCCTTCTTGTGGTGGACTCTGTTGAGGGACCAATGCCACAAACACGATTTGTTTTAAAGAAAGCTCTAGAGCTTGGACTTTCTGTTCTAGTGGTGGTGAATAAGATTGACAGGCCTTCAGCTCGTCCTGATCATGTGGTCAATGCAACGTTTGAGCTTTTTATTGAATTGAATGCTACTGATGAACAGTGTGATTTCCAAGTCATATATGCAAGTGGTGTCAAGGGCCAAGCTGGATTAAGTCCTGAAAAAGTTGGGAATGACCTTGGACCTCTTTTTGAAGCAGTCCTTCGGTGCATACCTGAGCCGACTATTGATCCTGATAGTTATTTGCAGATGCTGGTAACGAATTTGGATTATGATGAACACAAAGGACGAATAGCTATTGGAAGAGTGCATGCTGGTAAAATGCAGAGGGGTATGGAGGTAAAGGTGTGTACACCAGATGAAAATTGCAGGTTTGGCAAAGTTAGTGAGGTCTTTGTTTACGAGAATTTTATGAGAGTCCCAGCTGAAACAGTAGAAGCTGGAGATATCTGTGCCGTCTGTGGTATTGATGATGTCCTTATTGGTGAGACATTGGCAGATAAAGTTAATGGCTTAGCTTTGCCTGGAATAAAAGTTGAGGAACCAACTGTAAGGATGTCATTTTCGATCAACACTTCACCATTTGTTGGCCGTGAGGGGAAACATGTGACAAGCAGAAAACTTCGTGAAAGGCTTTATCGTGAACTTGAGAGAAACTTGGCAATGAAAGTTGAAGATGGGGAGATGGCTGATACATTCATTATCAGTGGGAGGGGTACATTACACATAACCATACTGATTGAGAACATGCGGAGGGAAGGATATGAATTTATGGTGGGCCCACCAAAGGTTATAAACAAAAGACTAAATGACAAGCTGCTTGAACCCTATGAGATTGCTATTGTGGAGGTGCCAGAAGAATACATGGGTTCTGTTGTTGAACTTCTGGGAAAACGTCGTGGTGTGATGGTCGATATGCAAACTGGTGTGGAGAATACAACAGTGGTGAAATACAAAATACCAACTCGTGGTCTACTTGGTCTTCGAAATGCGATTTTGACTGCTTCTAGAGGCACTGCAGTTCTAAACACTGTTTTTGATGAGTATGGACCATGGGCCGGAGACATCAGTACAAGGGACCAAGGCTCTCTGGTCTCATTTGAGACAGGAACAAGTACTTCATATGCCTTATCCAGTTCTCAAGAAAGAGGCCAGTTGTTTTTAGGTCCTGGTGTAGATGTCTACAAGGGTCAAATTGTAGGTATCCATCAAAGAACAGGCGACCTGTCCCTAAATGTTTGCAAGAGGAAGGCTGCAACAAATGTCCGTTCAAACAAGGAACAGACAGTGGTCCTTAATGCACCTTTGGATTTCAGTCTGGATGATTGTATTGAATATATCCAAGAGGATGAACTAGTTGAAGTCACACCATTGAGCGTGCGCATGTGCAAGAACCCAAGGGCAATGAAGAAAACAAAATAACTTTCACCATTAACATACTACAATAAATATATCAAATATTTACACCATAAAATACTTTTTCACCTGTATAATCAGTGGTCTTGACTCTTTATTACGTTATCCAGGATCTGAAGACGGACTATCTAGATTTCCCAAGCAGTAGGTAACCTTATGGGTTGTAGATAAAAATATTTGTCTTGGATTAATACCTCTCTCAATTCTGATTTTCTAGTAACCTAGAGTTTTACACCACTGGAAGAGTTGGGAACTTTGGGTTTCTCCCAAAGTCAGAGATCAGAGTGCCTTGTGTGTAGTTCAAGGTTTGACTTGACCTATTAGAGTCTCATTCATTGCTTTTGTATATGAAATTTCATTGCCATATTGTTATTACGTGTTAGTGGTGAACTGGCAGCAAAACAGCCGAGGAAGACTAATAAGCTGCTGGCCCATAACTTTAGGCATTTTCGATTATGAGATGCTGTTAGAAGAAGTAAAAGTTTATTTAAATTACATGGCTAAAAGCCATATTTCATGATTTAATGGAAAAGGTTATGGGGCTTCATTTTTGTTTC

Ace file of the UniGene sp_v1.1_unigene253 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein typa/bipa, putative; K06207 GTP-binding protein	-	-	79%
FL-Next	sp=Translation factor GUF1 homolog, chloroplastic; Ostreococcus lucimarinus (strain CCE9901).	-	-	28%
Blast2go	elongation factor family protein	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	89%

Source	InterPros	Term	Type	Identity
Blast2go	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	89%
Blast2go	Protein synthesis factor, GTP-binding	IPR000795	-	89%
Blast2go	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	89%
Blast2go	Small GTP-binding protein domain	IPR005225	-	89%
Blast2go	GTP-binding protein TypA	IPR006298	-	89%
Blast2go	Translation elongation/initiation factor/Ribosomal, beta-barrel	IPR009000	-	89%
Blast2go	Elongation factor G/III/V	IPR009022	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: A4RZA6

Fln msg: your sequence is longer than subject: 686 - 605

Fln protein: MAMSLQLQLLHGSQSFQSLPENHPHHGFQRLFLGKNLFGKSLFKSSVIKSSSKSVDAGKHHKQLKLSTRCSVSTTEPSTAENQKKNQLKARRDVRNIAIVAHVDHGKTTLVDAMLKQAKVFRVNQSVQERIMDSNALERERGITILSKNTAICYKDTKINIIDTPGHSDFGGEVERVLNMVEGVLLVVDSVEGPMPQTRFVLKKALELGLSVLVVVNKIDRPSARPDHVVNATFELFIELNATDEQCDFQVIYASGVKGQAGLSPEKVGNDLGPLFEAVLRCIPEPTIDPDSYLQMLVTNLDYDEHKGRIAIGRVHAGKMQRGMEVKVCTPDENCRFGKVSEVFVYENFMRVPAETVEAGDICAVCGIDDVLIGETLADKVNGLALPGIKVEEPTVRMSFSINTSPFVGREGKHVTSRKLRERLYRELERNLAMKVEDGEMADTFIISGRGTLHITILIENMRREGYEFMVGPPKVINKRLNDKLLEPYEIAIVEVPEEYMGSVVELLGKRRGVMVDMQTGVENTTVVKYKIPTRGLLGLRNAILTASRGTAVLNTVFDEYGPWAGDISTRDQGSLVSFETGTSTSYALSSSQERGQLFLGPGVDVYKGQIVGIHQRTGDLSLNVCKRKAATNVRSNKEQTVVLNAPLDFSLDDCIEYIQEDELVEVTPLSVRMCKNPRAMKKTK*

Protein Length: 687

Fln nts: ATGGGGGAATGAGCAAATAAATCACAAAGCGTCGTGACCTTGGCTGTCACTCTTCCAACACCATTGTTGGGCATCCCGCTGCAACTAGACAGCAGTATCTAGCTGCAACTAGAGCAGCAGTACCTAACG_-_ATGGCCATGTCACTACAATTGCAACTACTACATGGCTCTCAATCCTTTCAATCTCTACCTGAAAACCATCCCCACCATGGATTTCAAAGACTATTTCTCGGAAAAAATTTATTTGGCAAATCTCTGTTTAAGTCTAGCGTTATTAAAAGTTCTTCGAAGAGTGTGGATGCTGGGAAACACCACAAACAGTTGAAGCTGAGTACCAGATGTTCAGTCTCAACGACAGAGCCTTCGACAGCTGAAAATCAAAAAAAGAATCAGCTGAAAGCAAGGAGAGATGTAAGAAACATAGCAATTGTTGCTCATGTAGATCATGGGAAGACAACTTTAGTGGATGCAATGTTAAAGCAAGCCAAGGTGTTTCGTGTCAATCAATCTGTTCAAGAAAGAATTATGGACTCCAATGCACTGGAGAGAGAGCGGGGCATAACAATACTCAGCAAGAATACAGCAATATGCTACAAGGATACAAAGATTAACATCATTGATACTCCAGGTCATTCAGACTTTGGAGGGGAAGTGGAACGTGTGCTTAACATGGTGGAAGGTGTCCTTCTTGTGGTGGACTCTGTTGAGGGACCAATGCCACAAACACGATTTGTTTTAAAGAAAGCTCTAGAGCTTGGACTTTCTGTTCTAGTGGTGGTGAATAAGATTGACAGGCCTTCAGCTCGTCCTGATCATGTGGTCAATGCAACGTTTGAGCTTTTTATTGAATTGAATGCTACTGATGAACAGTGTGATTTCCAAGTCATATATGCAAGTGGTGTCAAGGGCCAAGCTGGATTAAGTCCTGAAAAAGTTGGGAATGACCTTGGACCTCTTTTTGAAGCAGTCCTTCGGTGCATACCTGAGCCGACTATTGATCCTGATAGTTATTTGCAGATGCTGGTAACGAATTTGGATTATGATGAACACAAAGGACGAATAGCTATTGGAAGAGTGCATGCTGGTAAAATGCAGAGGGGTATGGAGGTAAAGGTGTGTACACCAGATGAAAATTGCAGGTTTGGCAAAGTTAGTGAGGTCTTTGTTTACGAGAATTTTATGAGAGTCCCAGCTGAAACAGTAGAAGCTGGAGATATCTGTGCCGTCTGTGGTATTGATGATGTCCTTATTGGTGAGACATTGGCAGATAAAGTTAATGGCTTAGCTTTGCCTGGAATAAAAGTTGAGGAACCAACTGTAAGGATGTCATTTTCGATCAACACTTCACCATTTGTTGGCCGTGAGGGGAAACATGTGACAAGCAGAAAACTTCGTGAAAGGCTTTATCGTGAACTTGAGAGAAACTTGGCAATGAAAGTTGAAGATGGGGAGATGGCTGATACATTCATTATCAGTGGGAGGGGTACATTACACATAACCATACTGATTGAGAACATGCGGAGGGAAGGATATGAATTTATGGTGGGCCCACCAAAGGTTATAAACAAAAGACTAAATGACAAGCTGCTTGAACCCTATGAGATTGCTATTGTGGAGGTGCCAGAAGAATACATGGGTTCTGTTGTTGAACTTCTGGGAAAACGTCGTGGTGTGATGGTCGATATGCAAACTGGTGTGGAGAATACAACAGTGGTGAAATACAAAATACCAACTCGTGGTCTACTTGGTCTTCGAAATGCGATTTTGACTGCTTCTAGAGGCACTGCAGTTCTAAACACTGTTTTTGATGAGTATGGACCATGGGCCGGAGACATCAGTACAAGGGACCAAGGCTCTCTGGTCTCATTTGAGACAGGAACAAGTACTTCATATGCCTTATCCAGTTCTCAAGAAAGAGGCCAGTTGTTTTTAGGTCCTGGTGTAGATGTCTACAAGGGTCAAATTGTAGGTATCCATCAAAGAACAGGCGACCTGTCCCTAAATGTTTGCAAGAGGAAGGCTGCAACAAATGTCCGTTCAAACAAGGAACAGACAGTGGTCCTTAATGCACCTTTGGATTTCAGTCTGGATGATTGTATTGAATATATCCAAGAGGATGAACTAGTTGAAGTCACACCATTGAGCGTGCGCATGTGCAAGAACCCAAGGGCAATGAAGAAAACAAAATAA___CTTTCACCATTAACATACTACAATAAATATATCAAATATTTACACCATAAAATACTTTTTCACCTGTATAATCAGTGGTCTTGACTCTTTATTACGTTATCCAGGATCTGAAGACGGACTATCTAGATTTCCCAAGCAGTAGGTAACCTTATGGGTTGTAGATAAAAATATTTGTCTTGGATTAATACCTCTCTCAATTCTGATTTTCTAGTAACCTAGAGTTTTACACCACTGGAAGAGTTGGGAACTTTGGGTTTCTCCCAAAGTCAGAGATCAGAGTGCCTTGTGTGTAGTTCAAGGTTTGACTTGACCTATTAGAGTCTCATTCATTGCTTTTGTATATGAAATTTCATTGCCATATTGTTATTACGTGTTAGTGGTGAACTGGCAGCAAAACAGCCGAGGAAGACTAATAAGCTGCTGGCCCATAACTTTAGGCATTTTCGATTATGAGATGCTGTTAGAAGAAGTAAAAGTTTATTTAAATTACATGGCTAAAAGCCATATTTCATGATTTAATGGAAAAGGTTATGGGGCTTCATTTTTGTTTC

Fln Alignment:

sp_v1.1_unigene253___LKARRDVRNIAIVAHVDHGKTTLVDAMLKQAKVFRVNQSVQERIMDSNALERERGITILSKNTAICYKDTK-----INIIDTPGHSDFGGEVERVLNMVEGVLLVVDSVEGPMPQTRFVLKKALELGLSVLVVVNKIDRPSARPDHVVNATFELFIELNATDEQCDFQVIYASGVKGQAGLSPEKVGNDLGPLFEAVLRCIPEPTIDPDSYLQMLVTNLDYDEHKGRIAIGRVHAGKMQRGMEVKVCTPDENCRFGKVSEVFVYENFMRVPAETVEAGDICAVCG----IDDVLIGETLADKVN--GLALPGIKVEEPTVRMS-FSINTSPFVGREGKHVTSXXXXXXXXXXXXRNLAMKVE-DGEMADTFIISGRGTLHITILIENMRRE-GYEFMVGPPKVINK--------------------RLNDKLLEPYEIAIVEVPEEYMGSVVELLGKRRGVMVDMQTGVENTTVVKYKIP
A4RZA6_____________LPARR-IRNFSIIAHIDHGKSTLADTLLMRTKTVKERDMVKQ-VLDSMDLERERGITIKLNSARMDYVASDGELYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDSSQGVEAQTVANVYLALENDLEIFTVLNKIDLAGSEPDR-VKQEIEDVLGLDASD----------------AILASAKANIGMDDILERIVQVVPPPRDTANEPLRALIFDSYFDPYRGVVAVFRVMDGTMKTGDAMKMMATGATFAADEIGIM----RPDKVPVKELGPGEVGYIIGGIKSVADARVGDTITLSKNPAAEALPGYSKSVPMVFAGIFPTDTDRY--------DDLRESLQRLQINDCSLSFEPEQNSAMGTGFRCGFLGLLHMEIIQERLEREYDLDLITTAPSVVYNVYRTDGTMDSISNPADLCPPELRERIEEPYCRLDMIAPSDYVGTLMELASQRRGEFIDMTYLSETRTSIKYDIP

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
1481	88		11		0.923564
1543	11		88		0.923564
1665	11	88			0.923564
1735		88		11	0.923564
1736			11	88	0.923564
1739		88	11		0.923564
1741		11	88		0.923564
1742	11		88		0.923564
1743	88		11		0.923564
1744		11		88	0.923564
1748			11	88	0.923564
1753	11		88		0.923564
1754		11	88		0.923564
1755		88	11		0.923564
1756	11			88	0.923564
1758	88		11		0.923564
1897	88			11	0.923564
1899	88			11	0.923564
2080	85		14		0.993533
2110		16		83	0.994512
2167			25	75	0.996473
2295	75		25		0.996473
2332	25			75	0.996473
2333		75		25	0.996473
2334	25			75	0.996473
2337	25	75			0.996473
2340	25			75	0.996473
2341		25	75		0.996473
2345	25			75	0.996473
2451	12	87			0.992554
2475	87		12		0.992554
2489	87	12			0.992554
2496	85	14			0.993533
2497	85	14			0.993533
2506	16			83	0.994512
2507	16			83	0.994512
2508	16			83	0.994512
2509	16	83			0.994512
2568	11			88	0.923564
2627		87	12		0.992554
2632			12	87	0.992554
2633	12		87		0.992554
2638		12		87	0.992554
2641	87		12		0.992554
2645			12	87	0.992554
2646	14		85		0.993533
2648			14	85	0.993533
2683		16	83		0.994512
2684		16	83		0.994512
2685	83	16			0.994512
2687			83	16	0.994512
2690	16	16		66	0.988813
2691	33	16	50		1.0
2692	66	16		16	0.988813
2696	20		80		0.995493
2697	20	60		20	0.99255
2698		75		25	0.996473
2699	75			25	0.996473
2706	25	75			0.996473
2707			75	25	0.996473
2709		75	25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain