SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene249

Length: 2127 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene249
ATGGGGAAGCATTTACCCGCAATTAGAATCGAAGAAATTGCATGCACCCTGAAATAGAAGAGAACTGTGGGCGGAGGAGGTCAGCACCAAAAACGATAGGATATGGGTTTTGTATTTATTTGACGTCGTGACTTGGTTGTCATCAAGGGTTTGAAGGAGAGACTGGCAAGGGGCGGAGTAAACATCAAGCGTTTGAAGGAGAGACTGGCAAGGGGGGAGTAAACATCAAGGGTTTTAAGGAGAGACTGGCAAGGGGCAGAGTAAACATCAATAGTTAATCTAAATTTAATTTACGAGTCCATCCTGCAGCCGTGTTTAAGAGGGACTCCTTTATATAAATACCTCTCCCTGTTTAATCAGACTCCCTGTTTCATCAGACTCAAAACGATTGATGAGGTCGCCAAAACTGGTCGCCGTAAATTAATCTCTGATCAACTCAACTCAAGATGTATCAGTCACCACAAAATTCTCCTTCTCATGTTTCCAGCAATGGAAGCAGAAACAAAAATAAATACGAAGGGAAGAAACAATCGTCCTACAGAAGCGCAAGGCAAGATGTGAAATTGGCTTATTCATCTTCTAGTGCGGGCAACGCCAATGGTTCTATCGATAATCACAAAATGGATCTGCAGAGAGCCGCGGCTGTATTTCTTGAATGGCTTCCATCTCTTTCGTCAGATCTCTGCGAGCCTTGTATGCGTCTTTTGCAAGAGCGTGTCAACGGACTCGCTTCAGGTGGTTTTGGTGAAGAAAAGGCGGAGTTTTCTGGTCACCAAGCGCACGATGGTATCTCGATTGATGGGCGACCGGCTTCAGAGTTAACTCAGGGAAACAGAGATGAAGATGAAGTGAATAGTGGGAGGGTTCGTTTTCAGAATTCATGGTCGGATATCGCTCAAGAGGCGGAGGAAAAACATGAAGTACTGTCCGATGAAGCTGATCCGTCATCCGCTGCATCTTTAAGCGTAGGAAAGAAAAGGGATCTTTCGCGGGATGAGAGGGAATACATTCGATTCACGCAGCTAGGCCGGAAAAAGGACTTTGTATGTATTGAAAGGATTAATGGGAAACCGGTGAATATTCTTGAAGGGCTGGAGTTGCATACTGGAGTCTTCAGCGCCGCAGAGCAGAGGCGGCTGGTTGCTTTCATTTATCAACTCCAAGAGCAGGGGCGGAAAAAACAACTCAGAGAACGTACTTATTCAGAGCCTAGGAAGTGGATGCGGGGTAAAGGACGTGTAACCATCCAGTTTGGTTGTTGTTACAATTATGCAGTGGACAAGAATGGAAACCCCCCTGGCATTGTTCGTGATGAGGAGGTTGATCCACTTCCTCCTTTATTCAAAGCTGCCATTCGCCGATTGGTGAGATGGCACGTTTTGCCACCATCATGCATCCCTGATAGTTGCATTGTTAATATTTACGATGAAAGTGACTGCATACCACCTCATATTGATCATCATGATTTTGTTCGGCCTTTTTGTACGGTATCACTTCTCAGTGAATGCAACATTATCTTTGGTTCAAACTTGAAGATATTGGGACCAGGTGAATTTGTTGGTTCCACTGCAATACCATTGCCTGTGGGGTCAGTTCTTATTTTGAACGGAAATGGAGCTGATGTAGCGAAGCATTCTGTTCCAGCTGTCCCATCCAAAAGGATATCCATAACTTTTAGGAAGATGGACCAATCAAAATTTCCATATGAGTTTGTACCTGAGCCTGACTTGCAAGATATTCAACCTCTTTCATACATAAAACATAATATATACAATCAATCTCAACACTCAAGTCAACCAAGTGTCAGTGGTGAGATGGTTTTTGAGGAAGGAGAAACATCTGCCTCACCATTCTCAATGAGTGCATCAGATTTCCCTCCCTTACCTGGCTCCCATTCAGGAAATAGGCAACATGGGAAGAGCAGGCCATTAAGGCAATGAAATGTTCAAATAGATTGGAAGGTATGAATTATTGTAATGGTGGATTCTGTTTCTGAAGTTGCCTATGAAGCTTCTTTTGTTTTCCTGTAAACCTGATCTGGTAATGTATTATTTTGTTTAGCTAGGATGCACTTTTGTATCATGAGGTAATAAGGTATAATTGAAGCCACAATGGACTGTTTTAACC

Ace file of the UniGene sp_v1.1_unigene249

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	oxidoreductase, 2OG-Fe(II) oxygenase family protein	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	2og-fe oxygenase family protein	-	-	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLT0

Fln msg:

Fln protein: MYQSPQNSPSHVSSNGSRNKNKYEGKKQSSYRSARQDVKLAYSSSSAGNANGSIDNHKMDLQRAAAVFLEWLPSLSSDLCEPCMRLLQERVNGLASGGFGEEKAEFSGHQAHDGISIDGRPASELTQGNRDEDEVNSGRVRFQNSWSDIAQEAEEKHEVLSDEADPSSAASLSVGKKRDLSRDEREYIRFTQLGRKKDFVCIERINGKPVNILEGLELHTGVFSAAEQRRLVAFIYQLQEQGRKKQLRERTYSEPRKWMRGKGRVTIQFGCCYNYAVDKNGNPPGIVRDEEVDPLPPLFKAAIRRLVRWHVLPPSCIPDSCIVNIYDESDCIPPHIDHHDFVRPFCTVSLLSECNIIFGSNLKILGPGEFVGSTAIPLPVGSVLILNGNGADVAKHSVPAVPSKRISITFRKMDQSKFPYEFVPEPDLQDIQPLSYIKHNIYNQSQHSSQPSVSGEMVFEEGETSASPFSMSASDFPPLPGSHSGNRQHGKSRPLRQ*

Protein Length: 499

Fln nts: ATGGGGAAGCATTTACCCGCAATTAGAATCGAAGAAATTGCATGCACCCTGAAATAGAAGAGAACTGTGGGCGGAGGAGGTCAGCACCAAAAACGATAGGATATGGGTTTTGTATTTATTTGACGTCGTGACTTGGTTGTCATCAAGGGTTTGAAGGAGAGACTGGCAAGGGGCGGAGTAAACATCAAGCGTTTGAAGGAGAGACTGGCAAGGGGGGAGTAAACATCAAGGGTTTTAAGGAGAGACTGGCAAGGGGCAGAGTAAACATCAATAGTTAATCTAAATTTAATTTACGAGTCCATCCTGCAGCCGTGTTTAAGAGGGACTCCTTTATATAAATACCTCTCCCTGTTTAATCAGACTCCCTGTTTCATCAGACTCAAAACGATTGATGAGGTCGCCAAAACTGGTCGCCGTAAATTAATCTCTGATCAACTCAACTCAAG_-_ATGTATCAGTCACCACAAAATTCTCCTTCTCATGTTTCCAGCAATGGAAGCAGAAACAAAAATAAATACGAAGGGAAGAAACAATCGTCCTACAGAAGCGCAAGGCAAGATGTGAAATTGGCTTATTCATCTTCTAGTGCGGGCAACGCCAATGGTTCTATCGATAATCACAAAATGGATCTGCAGAGAGCCGCGGCTGTATTTCTTGAATGGCTTCCATCTCTTTCGTCAGATCTCTGCGAGCCTTGTATGCGTCTTTTGCAAGAGCGTGTCAACGGACTCGCTTCAGGTGGTTTTGGTGAAGAAAAGGCGGAGTTTTCTGGTCACCAAGCGCACGATGGTATCTCGATTGATGGGCGACCGGCTTCAGAGTTAACTCAGGGAAACAGAGATGAAGATGAAGTGAATAGTGGGAGGGTTCGTTTTCAGAATTCATGGTCGGATATCGCTCAAGAGGCGGAGGAAAAACATGAAGTACTGTCCGATGAAGCTGATCCGTCATCCGCTGCATCTTTAAGCGTAGGAAAGAAAAGGGATCTTTCGCGGGATGAGAGGGAATACATTCGATTCACGCAGCTAGGCCGGAAAAAGGACTTTGTATGTATTGAAAGGATTAATGGGAAACCGGTGAATATTCTTGAAGGGCTGGAGTTGCATACTGGAGTCTTCAGCGCCGCAGAGCAGAGGCGGCTGGTTGCTTTCATTTATCAACTCCAAGAGCAGGGGCGGAAAAAACAACTCAGAGAACGTACTTATTCAGAGCCTAGGAAGTGGATGCGGGGTAAAGGACGTGTAACCATCCAGTTTGGTTGTTGTTACAATTATGCAGTGGACAAGAATGGAAACCCCCCTGGCATTGTTCGTGATGAGGAGGTTGATCCACTTCCTCCTTTATTCAAAGCTGCCATTCGCCGATTGGTGAGATGGCACGTTTTGCCACCATCATGCATCCCTGATAGTTGCATTGTTAATATTTACGATGAAAGTGACTGCATACCACCTCATATTGATCATCATGATTTTGTTCGGCCTTTTTGTACGGTATCACTTCTCAGTGAATGCAACATTATCTTTGGTTCAAACTTGAAGATATTGGGACCAGGTGAATTTGTTGGTTCCACTGCAATACCATTGCCTGTGGGGTCAGTTCTTATTTTGAACGGAAATGGAGCTGATGTAGCGAAGCATTCTGTTCCAGCTGTCCCATCCAAAAGGATATCCATAACTTTTAGGAAGATGGACCAATCAAAATTTCCATATGAGTTTGTACCTGAGCCTGACTTGCAAGATATTCAACCTCTTTCATACATAAAACATAATATATACAATCAATCTCAACACTCAAGTCAACCAAGTGTCAGTGGTGAGATGGTTTTTGAGGAAGGAGAAACATCTGCCTCACCATTCTCAATGAGTGCATCAGATTTCCCTCCCTTACCTGGCTCCCATTCAGGAAATAGGCAACATGGGAAGAGCAGGCCATTAAGGCAATGA___AATGTTCAAATAGATTGGAAGGTATGAATTATTGTAATGGTGGATTCTGTTTCTGAAGTTGCCTATGAAGCTTCTTTTGTTTTCCTGTAAACCTGATCTGGTAATGTATTATTTTGTTTAGCTAGGATGCACTTTTGTATCATGAGGTAATAAGGTATAATTGAAGCCACAATGGACTGTTTTAACC

Fln Alignment:

sp_v1.1_unigene249___MYQSPQNSPSHVSSNGSRNKNKYEGKKQSSYRSARQDVKLAYXXXXXXXXXXXIDNHKMDLQRAAAVFLEWLPSLSSDLCEPCMRLLQERVNGLASGGFGEEKAEFSGHQAHDGISIDGRPASELTQGNRDEDEVNSGRVRFQNSWSDIAQEAEEKHEVLSDEADPSSAASLSVGKKRDLSRDEREYIRFTQLGRKKDFVCIERINGKPVNILEGLELHTGVFSAAEQRRLVAFIYQLQEQGRKKQLRERTYSEPRKWMRGKGRVTIQFGCCYNYAVDKNGNPPGIVRDEEVDPLPPLFKAAIRRLVRWHVLPPSCIPDSCIVNIYDESDCIPPHIDHHDFVRPFCTVSLLSECNIIFGSNLKILGPGEFVGSTAIPLPVGSVLILNGNGADVAKHSVPAVPSKRISITFRKMDQSKFPYEFVPEPDLQDIQPLSYIKHNIYNQSQHSSQPSVSGEMVFE-EGETSASPFSMSASDFPPLPGSHSGNRQHGKSRPLRQ
B8LLT0_____________MYPSP-HPQSHGFSNGNRNRNRYQGKKQSPYRSAKQDAQFDYSSSISGNGNDSINNDKMDLQRAAAVLLEWLPSLSPDLCQPCMGILQQRINGLLSGGFGEEKSEFSGHQEHEDISMNGSPASECTQGNRDEDEMNSGKVRFQNSWADMAQEVEEKHELLSDEADPSSTASSSGGKKRDLSRDEREYIRFTQLGRKKDFVCLERINGKPMNILEGLELHTGVFNAAEQRRLVAFIYQLQEQGRKKQLRERTYSEPRKWMRGKGRITIQFGCCYNYAVDKNGNPPGIVRDEEVDPLPPLFKAAIRRMVRWHVLPPSCIPDSCIVNIYDEGDCIPPHIDHHDFVRPFCTVSLLSECNIIFGSNLKILGPGEFAGSTAIPLPMGSVLILNGNGADVAKHSVPAVPCKRISITFRKMDHSKMPYEFLPEPDLQNIQPLSYIKKNIHNQS-HSSQPSVSGEMILEGGGETSTSPFSMNAVDFPPLHGSHSGNRQHGKSRPLRQ

SNPs (tot: 4)

Position	C %	T %	Probability
1076	33	66	0.997452
1315	30	70	1.0
1567	12	87	0.992554
1828	40	60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain