SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene245

Length: 1810 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene245

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein phosphatase 2c, putative (EC:3.1.3.16)	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	protein phosphatase	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	81%

Source	InterPros	Term	Type	Identity
Blast2go	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	81%
Blast2go	Protein phosphatase 2C-like	IPR001932	-	81%
Blast2go	Protein phosphatase 2C	IPR015655	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQA0

Fln msg:

Fln protein: MAAGAEVPQPVRAVISKMENGRCRDNDSEENSDGESSDNCREMITGRPPRPVSMLRHCASTARLAGPSESELDLDASSLLAESSAKNGKMFVPTFRSGSCAEIGPKQNMEDEHVCIDNLVEHLSPKYECPSPSAFYGVFDGHGGGDAARFIQNNLLNFIVEDSNFPDAIRMAVRNAFVKADHAFADACSLDSTSGTTALAALIFGRNMFVANAGDCRAVLGKRGKAVEMSRDHKPNCSIERVRIESLGGSVYDGYLNGQLSVARALGDWHMKGPRGSKCPLSAEPELKETILTEEDEFLIIGCDGLWDVMTSQCAVTIVRKGLMLHNDPERCSKELVREALNRHTCDNLTVVVVCFSANPPPRQEHPRSKFRRSISAEGLNCLKGHLECP*

Protein Length: 392

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTCA_-_ATGGCAGCAGGAGCAGAGGTGCCACAGCCTGTAAGAGCCGTTATAAGCAAGATGGAAAATGGGCGTTGCAGGGATAATGATAGCGAGGAGAACTCTGACGGAGAATCTAGCGACAATTGCCGGGAAATGATAACGGGAAGACCACCGAGGCCCGTTTCAATGCTTCGCCATTGTGCCAGCACTGCTAGGCTTGCAGGGCCGTCCGAATCTGAACTGGATCTGGATGCTAGCAGCTTGCTCGCAGAATCATCTGCCAAAAATGGGAAGATGTTTGTGCCTACCTTCCGCTCTGGCAGTTGTGCTGAAATAGGGCCCAAGCAAAATATGGAAGATGAGCATGTCTGTATTGATAATCTGGTGGAGCATCTGAGTCCAAAATATGAATGCCCTTCTCCAAGTGCTTTCTATGGGGTATTTGATGGTCATGGAGGAGGTGATGCAGCAAGATTTATTCAGAATAATCTTCTAAATTTCATTGTTGAAGATTCAAATTTTCCAGATGCAATTCGAATGGCTGTAAGGAATGCATTTGTGAAGGCTGATCATGCTTTTGCAGATGCTTGTTCCCTTGACAGCACCTCTGGCACAACAGCACTGGCAGCTCTTATATTTGGAAGGAATATGTTTGTTGCTAATGCAGGGGATTGCCGCGCAGTGTTGGGTAAGAGAGGGAAAGCAGTTGAGATGTCCAGAGACCACAAACCAAACTGTAGCATTGAAAGGGTGCGAATTGAATCTCTTGGAGGTTCTGTGTATGATGGGTATTTGAATGGTCAACTATCAGTTGCAAGGGCATTGGGAGACTGGCACATGAAAGGACCAAGAGGCTCGAAATGTCCTCTCAGTGCAGAGCCTGAATTAAAGGAGACTATACTTACAGAGGAAGATGAGTTTTTAATAATTGGTTGTGATGGTCTCTGGGATGTTATGACTAGTCAGTGTGCAGTCACTATTGTACGGAAAGGGCTTATGCTGCATAATGATCCAGAGCGCTGCTCGAAGGAGTTGGTTCGAGAGGCACTAAATCGCCACACTTGTGACAATCTGACAGTTGTTGTTGTCTGTTTTTCTGCCAATCCTCCTCCACGCCAAGAACATCCTAGATCAAAATTCAGGAGGAGCATTTCTGCTGAAGGCCTAAACTGTCTGAAAGGTCATTTGGAATGCCCATGA___AGGAACCATTAGCAGAAATTAGTTTTATTATAAAGCGGATTTGATCAAAACCTCCTTTACATGAAAGGAGACAAGCAACGAAGTGAACATTTAACCATTTACCCCCCTTGTTTATTTATTGTGAAAGTTAGTTCGATAATTTAAAAGCTTATTATTGCTATGGAGGTGGAACTTGGAAGTACTTTGCAAATCTATGTTATTGGCCAACAACAGAAAATAGCGTCTGGGCTTTTCTGCAGTTGATATCAGTGGATTGCCAGAAAGGTTTTTAAACTAGACAAAACACAAAACTGGAGCAGCATATCTTGCTCTTGACTCTGACCAGCCTCAGAGATATTGGCAATCTTGCGAACATGGTTCAAATGGAGGTTGATATCTATCCTCCAGTGCATGGGAAAGGTTGGTCTAATTGCTCCAGGAAGGATAGATTCGCTACCAGTTTGGTGGTGTATATAATGGGGTTGCCAACAAGATTGAACATTTGATTGGCGACAATGCAGTTGTGTAGTTGTGCAGATGGGCTATTTGATAGCCATTTGTTGCCAATGTGAGTTAGGATTATCTGATTTTTCAGGAGGATAACAAACCTTCTATGTAATATCTCAA

Fln Alignment:

sp_v1.1_unigene245___REMITGRPPRPV-SMLRHCASTARLAGPXXXXXXXXXXXXXXXXXXKNGKM-------FVPTFRSGSCAEIGPKQNMEDEHVCIDNLVEHLS-PKYECPSPSAFYGVFDGHGGGDAARFIQNNLLNFIVEDSNFPDAIRMAVRNAFVKADHAFADACSLDS--TSGTTALAALIFGRNMFVANAGDCRAVLGKRGKAVEMSRDHKPNCSIERVRIESLGGSVYDGYLNGQLSVARALGDWHMKGPRG---SKC-PLSAEPELKETILTEEDEFLIIGCDGLWDVMTSQCAVTIVRKGLMLHNDPERCSKELVREALNRHTCDNLTVVVVCFSANPPPRQEHPRSKFRRSISAEGLNCLKGHLE
B8LQA0_____________QKIIAERPPNPQGTALRHCVNIGHLPSAYLPSLVRHGSLMKRGESVEAVKKRENVATNFIPVLRSGGWADIGDRDCMEDTHICIDSFVDKFGFPPIE-EGPGAFYGVFDGHGGKHAAQFACDRLPSLIVKDADFPLQIEKAARRAFLQTDNAFAEACSHDAGLSSGTTALVAVIIGRYLLVANAGDCRAVLSRRGKAIEMSRDHRPDCTKERIRIEASGGYIDDGYLNGQLNVTRALGDWHMEGLKAHGVSGCGPLSAEPELKRITLTEEDEFLIIGCDGLWEVFLSQNAVDFARRKLQEHNDPLVCCKELIDEALKRKTADNLTAVVVCLQSDPPPNLVVPRSRVRRSISAEGLRGLQSYLD

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1502			90	10	0.90298
1503	90	10			0.90298
1504	10		90		0.90298
1506	90			10	0.90298
1606	85			14	0.999981
1613			57	35	1.0
1813	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain