SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene235

Length: 2408 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene235
AGTTGGGTAAATATATGAGCGAAGATACAGTCTTTGGGGTCTTTTCATTAATCTTTGGACGTTGACCTTAATCCCTGTTCTTAAGTATGTTGTCATAGTTTTGAGTGCAAGCGACAATGGTGAAGGGGGAACATTTGCATTGTATTCACTTCTTTGTAGGCATGCAAAGTTGAGTTTGATTCCAAATCAGCAAGCAGCTGATGAGGAAGTTTCTACATATTATAATACAAGGCAGACAGGCTCAGAATACAGGAACCTCTCCTTTGAAGCGATTTCTGGAAAAGCATAGAAGACTGCGCACAGGTTTACTGGTTGTGGTTTTACTAGGCACTTCCATGGTAATAGGTGATGGTGTTCTCACGCCTGCAATATCTGTTCTCTCATCAGTATCTGGGCTTCAAGTACGCACTTCAAAGCTTCCCAACAGTGTGGTGGTGGTTCTTGCCTGCATTATATTGATTGGCCTTTTTGCTCTGCAGCATTTTGGCACTCATAGGGTGGCCTTTATATTTGCACCTATTGTGATTGCTTGGCTATTCTGCATCTGCGCAGTTGGCATATACAATGTTGTTCATTGGAATCCTAGTATATTACGTGCCCTCTCTCCTTATTATGCATACAAGTTTTTTCGGAATAATGGTAAAGATAAATGGATTTCTCTCGGAGGGATACTCCTATGTATTACAGGTACAGAGGCGATGTTTGCAGATCTTGGACACTTCACTCCTTTTTCCATCCGGATTGCCTTTGCAGGAGTTGTCTATCCATGTCTGATAGTCTCTTACATGGGACAAGCTGCCTTTCTTTCGAAAAATTTTCATCTTGTTGACAAAACTTTCTACGATTCAATACCTGAGCGTGTTTTTTGGCCTGTGTTTGTAGTGGCCACCCTTGCTGCTATTGTTGGAAGCCAGGCTGTTATTTCAGCGACCTTTTCAATCGTCAAGCAATGCCATGCTTTGGGTTGTTTTCCACGTATCAAGATAGTCCACACTTCGAGGCATATCTGTGGTCGAATTTACATACCAGAAATAAATTGGATTCTCTTGGTTCTATGCCTTGCCGTCACTGTAGGATTCAGGGATACCACCTTAATTGGGCATGCTTATGGCATTGCTGCTATCACTGTTATGTTTGTGACAACATGCCTTATGTCACTTGTTATAATCATTGTATGGCGAAAGAATTTTGTATGGGCTATTGCTTTTCTTCTCTTCTTTGGATGGATTGAAGGATCCTACCTCTCAGCCTCTGTTATGAAGGTGCCACAGGGAGGCTGGGTTCCTCTTGCTTTGGCAGCAATATTTATGGTTATCATGTATGTATGGCATTATGGTACACGGAGAAAATACATGTTTGACTTACAAAACAAGGTTTCTATGAAATGGATTCTCACACTTGGACCAAGCCTTGGAATTGTGCGGGTTCCTGGTATTGGATTAATCTATACTGAATTGGTCACAGGGGTTCCTGCTGTATTCTCACATTTTGTCACAAATCTTCCTGCATTTCATCAAGTACTTGTGTTTGTGTGCATCAAATCAGTTCCTGTTCCATTTGTCCCTGCTGAAGAACGTTATCTTATTGGTCGCATTGGCCCAAAAGTATACCATATGTACAGATGTATTGTGAGGTATGGGTATAAAGATATCCCGAAAGATGATAATGATTTTGAGAATCGACTTATTCTCAGTATTGCTGAATTTATACAGATGGAAGCTGAAGAATCACAGTCTACAAGCTATGAAAATTCACTGGATGGAAGGATGGCAGTAATTAGCACTCCTGTTCGATCTTCCATGAGGATGGTAATTGCAGATGAGGATGATAATGCAGCGGGGAGTGTTCCCAGCAGCAAGTCTCCAACTTTACAGAGTCTCCAGTCCATGTATGAAATGGATGCTCCTCAATTGGGAAGACAGCGGAGGGTCAGATTTGAATTGTTTAATAGCCCTACAGTAGCACCTGATGTAAGGGAAGAGCTATTGGAATTGATTAAGGCAAAGGAGGCAGGTGTTGCTTACATACTGGGTCACTCGTACATCAAAGCCAGGAAGTCATCATCATTTCTAAAGAAATTTGCAATTGATGTAGGATATTCATTCCTTCGAAAGAATTGCAGGGGACCTGCTGTGGCATTACACATTCCACATATTAGCCTGATTGAGGTGGGTATGATATATTATGTGTAAATGCTTTGTATAAACCTTGTTGGTCATAGAGGATGCTAAACATCATCATTATCATAATCAGTGCTGTCCACCAGTTTAAGAACCTACAGTGCATCTCTGACACTGAGGAAATAAGTACAGAGTTTCCATTGCAATTTTGTACTGAAAGGCAAATCTTGTAGACATCATCCTACCATTATATCAATTTGGTAATTTCTATAAAGCGGAAAGCATCTA

Ace file of the UniGene sp_v1.1_unigene235

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Potassium transporter, putative n=1 Tax=Ricinus communis RepID=B9RGU8_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	potassium transporter	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	K+ potassium transporter	IPR003855	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F8

Fln msg: your sequence is longer than subject: 664 - 250

Fln protein: MRKFLHIIIQGRQAQNTGTSPLKRFLEKHRRLRTGLLVVVLLGTSMVIGDGVLTPAISVLSSVSGLQVRTSKLPNSVVVVLACIILIGLFALQHFGTHRVAFIFAPIVIAWLFCICAVGIYNVVHWNPSILRALSPYYAYKFFRNNGKDKWISLGGILLCITGTEAMFADLGHFTPFSIRIAFAGVVYPCLIVSYMGQAAFLSKNFHLVDKTFYDSIPERVFWPVFVVATLAAIVGSQAVISATFSIVKQCHALGCFPRIKIVHTSRHICGRIYIPEINWILLVLCLAVTVGFRDTTLIGHAYGIAAITVMFVTTCLMSLVIIIVWRKNFVWAIAFLLFFGWIEGSYLSASVMKVPQGGWVPLALAAIFMVIMYVWHYGTRRKYMFDLQNKVSMKWILTLGPSLGIVRVPGIGLIYTELVTGVPAVFSHFVTNLPAFHQVLVFVCIKSVPVPFVPAEERYLIGRIGPKVYHMYRCIVRYGYKDIPKDDNDFENRLILSIAEFIQMEAEESQSTSYENSLDGRMAVISTPVRSSMRMVIADEDDNAAGSVPSSKSPTLQSLQSMYEMDAPQLGRQRRVRFELFNSPTVAPDVREELLELIKAKEAGVAYILGHSYIKARKSSSFLKKFAIDVGYSFLRKNCRGPAVALHIPHISLIEVGMIYYV*

Protein Length: 665

Fln nts: AGTTGGGTAAATATATGAGCGAAGATACAGTCTTTGGGGTCTTTTCATTAATCTTTGGACGTTGACCTTAATCCCTGTTCTTAAGTATGTTGTCATAGTTTTGAGTGCAAGCGACAATGGTGAAGGGGGAACATTTGCATTGTATTCACTTCTTTGTAGGCATGCAAAGTTGAGTTTGATTCCAAATCAGCAAGCAGCTG_-_ATGAGGAAGTTTCTACATATTATAATACAAGGCAGACAGGCTCAGAATACAGGAACCTCTCCTTTGAAGCGATTTCTGGAAAAGCATAGAAGACTGCGCACAGGTTTACTGGTTGTGGTTTTACTAGGCACTTCCATGGTAATAGGTGATGGTGTTCTCACGCCTGCAATATCTGTTCTCTCATCAGTATCTGGGCTTCAAGTACGCACTTCAAAGCTTCCCAACAGTGTGGTGGTGGTTCTTGCCTGCATTATATTGATTGGCCTTTTTGCTCTGCAGCATTTTGGCACTCATAGGGTGGCCTTTATATTTGCACCTATTGTGATTGCTTGGCTATTCTGCATCTGCGCAGTTGGCATATACAATGTTGTTCATTGGAATCCTAGTATATTACGTGCCCTCTCTCCTTATTATGCATACAAGTTTTTTCGGAATAATGGTAAAGATAAATGGATTTCTCTCGGAGGGATACTCCTATGTATTACAGGTACAGAGGCGATGTTTGCAGATCTTGGACACTTCACTCCTTTTTCCATCCGGATTGCCTTTGCAGGAGTTGTCTATCCATGTCTGATAGTCTCTTACATGGGACAAGCTGCCTTTCTTTCGAAAAATTTTCATCTTGTTGACAAAACTTTCTACGATTCAATACCTGAGCGTGTTTTTTGGCCTGTGTTTGTAGTGGCCACCCTTGCTGCTATTGTTGGAAGCCAGGCTGTTATTTCAGCGACCTTTTCAATCGTCAAGCAATGCCATGCTTTGGGTTGTTTTCCACGTATCAAGATAGTCCACACTTCGAGGCATATCTGTGGTCGAATTTACATACCAGAAATAAATTGGATTCTCTTGGTTCTATGCCTTGCCGTCACTGTAGGATTCAGGGATACCACCTTAATTGGGCATGCTTATGGCATTGCTGCTATCACTGTTATGTTTGTGACAACATGCCTTATGTCACTTGTTATAATCATTGTATGGCGAAAGAATTTTGTATGGGCTATTGCTTTTCTTCTCTTCTTTGGATGGATTGAAGGATCCTACCTCTCAGCCTCTGTTATGAAGGTGCCACAGGGAGGCTGGGTTCCTCTTGCTTTGGCAGCAATATTTATGGTTATCATGTATGTATGGCATTATGGTACACGGAGAAAATACATGTTTGACTTACAAAACAAGGTTTCTATGAAATGGATTCTCACACTTGGACCAAGCCTTGGAATTGTGCGGGTTCCTGGTATTGGATTAATCTATACTGAATTGGTCACAGGGGTTCCTGCTGTATTCTCACATTTTGTCACAAATCTTCCTGCATTTCATCAAGTACTTGTGTTTGTGTGCATCAAATCAGTTCCTGTTCCATTTGTCCCTGCTGAAGAACGTTATCTTATTGGTCGCATTGGCCCAAAAGTATACCATATGTACAGATGTATTGTGAGGTATGGGTATAAAGATATCCCGAAAGATGATAATGATTTTGAGAATCGACTTATTCTCAGTATTGCTGAATTTATACAGATGGAAGCTGAAGAATCACAGTCTACAAGCTATGAAAATTCACTGGATGGAAGGATGGCAGTAATTAGCACTCCTGTTCGATCTTCCATGAGGATGGTAATTGCAGATGAGGATGATAATGCAGCGGGGAGTGTTCCCAGCAGCAAGTCTCCAACTTTACAGAGTCTCCAGTCCATGTATGAAATGGATGCTCCTCAATTGGGAAGACAGCGGAGGGTCAGATTTGAATTGTTTAATAGCCCTACAGTAGCACCTGATGTAAGGGAAGAGCTATTGGAATTGATTAAGGCAAAGGAGGCAGGTGTTGCTTACATACTGGGTCACTCGTACATCAAAGCCAGGAAGTCATCATCATTTCTAAAGAAATTTGCAATTGATGTAGGATATTCATTCCTTCGAAAGAATTGCAGGGGACCTGCTGTGGCATTACACATTCCACATATTAGCCTGATTGAGGTGGGTATGATATATTATGTGTAA___ATGCTTTGTATAAACCTTGTTGGTCATAGAGGATGCTAAACATCATCATTATCATAATCAGTGCTGTCCACCAGTTTAAGAACCTACAGTGCATCTCTGACACTGAGGAAATAAGTACAGAGTTTCCATTGCAATTTTGTACTGAAAGGCAAATCTTGTAGACATCATCCTACCATTATATCAATTTGGTAATTTCTATAAAGCGGAAAGCATCTA

Fln Alignment:

sp_v1.1_unigene235___IYTELVTGVPAVFSHFVTNLPAFHQVLVFVCIKSVPVPFVPAEERYLIGRIGPKVYHMYRCIVRYGYKDIPKDDNDFENRLILSIAEFIQMEAEES-QSTSYENSLDGRMAVISTPVRSSMRMVIADEDDNAAGSVPSS--KSPTLQSLQSMYEMDAPQLGRQRRVRFELFNSPTVAPDVRXXXXXXIKAKEAGVAYILGHSYIKARKSSSFLKKFAIDVGYSFLRKNCRGPAVALHIPHISLIEVGMIYYV
D5A8F8_____________MYTELVTGIPANFTHFVTNLPAFHQVLIFICIKSVPVPYVPPEERFLIGRVGPKEYRLYRCIVRYGYRDVHGDTDHFEDQLILNLGEFIRSEAKHSCSSDSY--SADGRMAVIGTPVHGMESILSYETAEESIQSVNLSYLGSQTIQSIQDLIETDSPHLARRKKVRFLLPSSPDIDPDVKDELQELFQAREAGIAFILGHSYVKAKNDSSFLKKLAINAGYNFLRKNCRGPSVALRIPHISLLEVGMVYLV

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
552		75		25	0.996473
974	33			66	0.997452
976		66	33		0.997452
978	33		66		1.0
979		66	33		0.997452
1071		66		33	1.0
1190	62		37		1.0
1401	80			6	0.999961
1457	83		16		0.999991
1817	10			90	0.90298
1821	90		10		0.90298
2043	33		66		0.997452
2183			16	83	0.994512
2206	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain