SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene231

Length: 2165 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene231
ATGGGGGTGGCTGGTGGTGGAACAATGGGCATTGAGAAGCGGCGGGCATGGGAGCTCTGTAGTCAGAATCCACACTCAAATATCCAGCAACCGGGGATCGGTTTCCGTGCGCCCCCTTAGACGGATTCGTAAGTGCTTGTTTTCTCTCCTCGTCGATGTGGGATTGCTCATCACCCGCCACGTTTGCCACCCTTGCAGGTATTTGAGACACCAGAGCGTCACTCGATTCTGTCCTCCGATCGATCCCTGGAGTGACTCTTGAGAAGAGGTTCTGGTCTCGGAATTCAAGAAAGGGAAAAAGACCGAGCTCTGCACTCTCCGGGTTCTTCAAATTTGGGGTTCTGAGTTTGTATCAGTAATGCTGGAGAATTCGGTTGCGGTGAAAGAAGGGGCTTTGAATCTTTCATCAGTGGTGGTTGAGGGTTCGAAATAAATTGCGTGTTGCGGGGCTTGCGGCTTTGATTTGTTTGGTGGGAGAAATTGGCTTTTGGGGTTCTTTCATCCCAATGCCAGTATTGATGGAGCGGATGATGACGGTTGGCGTGGTTGCTCTGAATTTCGGCGTTAATTCTGTGGTTTTGATTGCAAATGCATGTTGAAAAGATAAATCGGTGGCAGAGGACTGTTTTCTGGGAGAATTTCGAAGCACTTTCTTCTTCTTTGGGGTTTTTATATGGCCGATTGTAATTCTCTTGCGTACAAGATGTCTAATTGTTCAGCGTATGAAGATTCGTTCCAGACGAATCTGGAGCGCTTTTTGAACCGCACTACACCAATCATGCCAGTTCAGTATTTGTCCAAGACATCTCTTCGAGATTCTCCATTGAACAAGTGGTGGCAGCCCTCCGAAGCAGAGTCTGCAGAGTATTTCAGCCTCGGAGATCTCTGGGATAACTACAATGAATCAAGTGTGTACGGAACAGGAGTACCGATCCGTTTGAATACTGGAGAAACTGTAGTTCAATATTATGTGCCTTACCTGTCCGCGCTTCAGATATATACCTCGACTGACATTAGATCGTCTTCAAACTTGAGGAGTATGAGGGATGAGAGTGACGGAGACTTTGAATCGAGGGATTCGAGCAGCGATTCGAGCAGTGATAGTGAAAGTGGACATGGTACTGATAGATCTTTAAGCTTCAGAAGTGAATCCTGCAATTCCAGTGAAAGAGTAGGAGCATGGGATGCTGTCTCCGAAGATTCTGGGGCCGATCCTGATCATTTATGGCATCTACAAGATCGACTTGGGCACCTGTGTTTCCAGTATTTTGAGCGAGCGTTGCCTTATGGAAGAGTCCCTCTAATGGAAAAGGTCAATCAGTTAGCACGTGGATTTCCAGAATTGGTTTCTTTAAGAAGCGTTGATCTTTCTCCAGCAAGTTGGATGTCAGTTGCATGGTATCCTATTTATCACATTCCAACGGGGCGTACGGTTAGGGATCTCTCGGCCTGCTTCTTAACTTATCATACATTGTCTCTCTCCTTCCAAGAGAATGAGATTGGACAAGGTGATACTGTGTCTGGATCTGGGACTGAGTTTTCCGAAAAGTATCCTAAGGATTCCCAACGCATAAGTCTTCCTCCATTTGGACTTGCCACATACAAAATGCAAGGAAGTCTTTGGACTTCTACTGGGAGTGCTGATCAACAACGGATTTTCGCTCTGTATAGCTCTGCCGATTCCTGGTTAAAGCAGCTGAGAGTTAGGCATCCAGATTTTGAGCATCCAGATTTTGAGTTTTTTGCATCTCACAATGTTTGAATCCATTTCAAATCCATTGTTGGAGTAACCTAACAATACCTGTACTCTTCTTCCTATTTTTGAAGCCCTCTGCTAGTTTAAGGCAGAGAACTGAGTTATCTACAAGCGGCAAGTAGCTTTATTTATGTAGGATTAACGTGTTGGAGTGCAGAGAACAGAAGAGAACTTGTAGGATATGAAGGCTGTAAATGTTTTGAAAGATATATATCCTCAGGAAAGAGATCAGGATAGACACATGGCTTTTGTAGATTAAGTTAAAGAAAATCCAAAAAAGGAAAAAAACATGTAAATTGGGTTCGCTTGTGCCCTGTAGTTTTAGGCTATCTGTAATGTTCATTGAGAAATCGTCACGTGTACAGTGTTGGAACTTCGTCCTAATCAAATAAATTTTACACAGTTGCTG

Ace file of the UniGene sp_v1.1_unigene231

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF789 domain containing protein	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	53%
Blast2go	protein	-	-	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF789	IPR008507	-	0.0	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RW40

Fln msg: your sequence is longer than subject: 363 - 317

Fln protein: MADCNSLAYKMSNCSAYEDSFQTNLERFLNRTTPIMPVQYLSKTSLRDSPLNKWWQPSEAESAEYFSLGDLWDNYNESSVYGTGVPIRLNTGETVVQYYVPYLSALQIYTSTDIRSSSNLRSMRDESDGDFESRDSSSDSSSDSESGHGTDRSLSFRSESCNSSERVGAWDAVSEDSGADPDHLWHLQDRLGHLCFQYFERALPYGRVPLMEKVNQLARGFPELVSLRSVDLSPASWMSVAWYPIYHIPTGRTVRDLSACFLTYHTLSLSFQENEIGQGDTVSGSGTEFSEKYPKDSQRISLPPFGLATYKMQGSLWTSTGSADQQRIFALYSSADSWLKQLRVRHPDFEHPDFEFFASHNV*

Protein Length: 364

Fln nts: ATGGGGGTGGCTGGTGGTGGAACAATGGGCATTGAGAAGCGGCGGGCATGGGAGCTCTGTAGTCAGAATCCACACTCAAATATCCAGCAACCGGGGATCGGTTTCCGTGCGCCCCCTTAGACGGATTCGTAAGTGCTTGTTTTCTCTCCTCGTCGATGTGGGATTGCTCATCACCCGCCACGTTTGCCACCCTTGCAGGTATTTGAGACACCAGAGCGTCACTCGATTCTGTCCTCCGATCGATCCCTGGAGTGACTCTTGAGAAGAGGTTCTGGTCTCGGAATTCAAGAAAGGGAAAAAGACCGAGCTCTGCACTCTCCGGGTTCTTCAAATTTGGGGTTCTGAGTTTGTATCAGTAATGCTGGAGAATTCGGTTGCGGTGAAAGAAGGGGCTTTGAATCTTTCATCAGTGGTGGTTGAGGGTTCGAAATAAATTGCGTGTTGCGGGGCTTGCGGCTTTGATTTGTTTGGTGGGAGAAATTGGCTTTTGGGGTTCTTTCATCCCAATGCCAGTATTGATGGAGCGGATGATGACGGTTGGCGTGGTTGCTCTGAATTTCGGCGTTAATTCTGTGGTTTTGATTGCAAATGCATGTTGAAAAGATAAATCGGTGGCAGAGGACTGTTTTCTGGGAGAATTTCGAAGCACTTTCTTCTTCTTTGGGGTTTTTAT_-_ATGGCCGATTGTAATTCTCTTGCGTACAAGATGTCTAATTGTTCAGCGTATGAAGATTCGTTCCAGACGAATCTGGAGCGCTTTTTGAACCGCACTACACCAATCATGCCAGTTCAGTATTTGTCCAAGACATCTCTTCGAGATTCTCCATTGAACAAGTGGTGGCAGCCCTCCGAAGCAGAGTCTGCAGAGTATTTCAGCCTCGGAGATCTCTGGGATAACTACAATGAATCAAGTGTGTACGGAACAGGAGTACCGATCCGTTTGAATACTGGAGAAACTGTAGTTCAATATTATGTGCCTTACCTGTCCGCGCTTCAGATATATACCTCGACTGACATTAGATCGTCTTCAAACTTGAGGAGTATGAGGGATGAGAGTGACGGAGACTTTGAATCGAGGGATTCGAGCAGCGATTCGAGCAGTGATAGTGAAAGTGGACATGGTACTGATAGATCTTTAAGCTTCAGAAGTGAATCCTGCAATTCCAGTGAAAGAGTAGGAGCATGGGATGCTGTCTCCGAAGATTCTGGGGCCGATCCTGATCATTTATGGCATCTACAAGATCGACTTGGGCACCTGTGTTTCCAGTATTTTGAGCGAGCGTTGCCTTATGGAAGAGTCCCTCTAATGGAAAAGGTCAATCAGTTAGCACGTGGATTTCCAGAATTGGTTTCTTTAAGAAGCGTTGATCTTTCTCCAGCAAGTTGGATGTCAGTTGCATGGTATCCTATTTATCACATTCCAACGGGGCGTACGGTTAGGGATCTCTCGGCCTGCTTCTTAACTTATCATACATTGTCTCTCTCCTTCCAAGAGAATGAGATTGGACAAGGTGATACTGTGTCTGGATCTGGGACTGAGTTTTCCGAAAAGTATCCTAAGGATTCCCAACGCATAAGTCTTCCTCCATTTGGACTTGCCACATACAAAATGCAAGGAAGTCTTTGGACTTCTACTGGGAGTGCTGATCAACAACGGATTTTCGCTCTGTATAGCTCTGCCGATTCCTGGTTAAAGCAGCTGAGAGTTAGGCATCCAGATTTTGAGCATCCAGATTTTGAGTTTTTTGCATCTCACAATGTTTGA___ATCCATTTCAAATCCATTGTTGGAGTAACCTAACAATACCTGTACTCTTCTTCCTATTTTTGAAGCCCTCTGCTAGTTTAAGGCAGAGAACTGAGTTATCTACAAGCGGCAAGTAGCTTTATTTATGTAGGATTAACGTGTTGGAGTGCAGAGAACAGAAGAGAACTTGTAGGATATGAAGGCTGTAAATGTTTTGAAAGATATATATCCTCAGGAAAGAGATCAGGATAGACACATGGCTTTTGTAGATTAAGTTAAAGAAAATCCAAAAAAGGAAAAAAACATGTAAATTGGGTTCGCTTGTGCCCTGTAGTTTTAGGCTATCTGTAATGTTCATTGAGAAATCGTCACGTGTACAGTGTTGGAACTTCGTCCTAATCAAATAAATTTTACACAGTTGCTG

Fln Alignment:

sp_v1.1_unigene231___SFQTNLERFLNRTTPIMPVQYLSKTSLRDSPLNKWWQPSEAESAEYFSLGDLWDNYNESSVYGTGVPIRLNTGETVVQYYVPYLSALQIYTSTDIRSSSNLRSMRXXXXXXXXXXXXXXXXXXXXXXGHGTDRSLSFRSESCNS---SERVGAWDAVS-EDSGADPDHLWHLQDRLGHLCFQYFERALPYGRVPLMEKVNQLARGFPELVSLRSVDLSPASWMSVAWYPIYHIPTGRTVRDLSACFLTYHTLSLSFQENEIGQGDTVSGSGTEFSEKYPKDSQRISLPPFGLATYKMQGSLWTSTG-SADQQRIFALYSSADSWLKQLRVRHPDFEH
B9RW40_____________SAQSNLDCFLHCTTPLVPSQFLPKTEIRN--LNRLWHPWERDTVEYFTLGDLWNCFDEWSAYGAGVPIALNNGETLVQYYVPYLSAIQIFTS-----NSSLNGFRDEIES-----------------GDGETRD-SF-SDSCSDESESDKLWRWDGCSSEEGGFEQDNHWRLNDRLGHLYFQYFERSTPYGRVPLMDKINGLAERYPGLMSLRSVDLSPASWMAVAWYPIYHIPMGRTIKDLSTCFLTYHTLSSSFQDMDL-------DDDIDSPERKRKEGESISLPPFGLATYKMQGNVWISGNCGRDQERLVSLFSVADSWLKQLRVQHHDFNY

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
365		33		66	0.997452
457	10		90		0.90298
458	30		70		1.0
496		12		87	0.992554
536	75		25		1.0
550			25	75	1.0
607		75		25	1.0
618		20		80	0.999996
685		75		25	0.996473
692		50		50	1.0
770		85		14	0.993533
1160	88		11		0.923564
1216		90		10	0.90298
1218		10		90	0.90298
1235		12		87	0.992554
1283		11		88	0.923564
1632		20		80	1.0
1658		5		85	0.999793
1864		91		8	0.999807
1902		9	90		0.999842
1934			7	92	0.999664
2085		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain