SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene230

Length: 1330 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene230

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phosphatidylinositol-4-phosphate 5-kinase, putative (EC:2.7.1.68)	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	phosphatidylinositol-4-phosphate 5-kinase	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	81%
Blast2go	cellular amino acid metabolic process	GO:0006520	Biological Process	81%
Blast2go	protein binding	GO:0005515	Molecular Function	81%
Blast2go	transferase activity	GO:0016740	Molecular Function	81%
Blast2go	membrane	GO:0016020	Cellular Component	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%
Blast2go	cytosol	GO:0005829	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Blast2go	Phosphatidylinositol-4-phosphate 5-kinase, core	IPR002498	-	81%
Blast2go	Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup	IPR016034	-	81%
Blast2go	Phosphatidylinositol-4-phosphate 5-kinase	IPR023610	-	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABH6

Fln msg: your sequence is longer than subject: 365 - 318

Fln protein: WGNLREMFKIDAADYMMSICGSAALRELSSPGKSGSVFYLSQDDRFMIKTLRKSEVQVLLRMLPNYHHHVQMYENTLITKFFGLHRIKPAGGRKVRFVVMGNMFCTELRIHRRFDLKGSSQGRSTDKIEIDENTTLKDLDLEYVFYLEPSWREALLKQIEDDCRFLESQRIMDYSLLLGLHFRAPQYLRSYISGSQNTSTEGIGTAGDEVASAVDDEISSYPQSLVLVAREPHQDGRVLGSHIRGSALRASAVGDEEVDLLLPGTARLQIQLGVNMPARADRVPQRDTDHNAGQLLDEVYDVVLYLGIIDILQEYNFAKKIEHAYKAFQFDSVSISAVEPKLYSQRFLDFIQKVFPPNSNEMEP*

Protein Length: 366

Fln nts: ATGGGGGAATTTGCGAGAAATGTTCAAGATTGATGCTGCTGATTATATGATGTCCATCTGCGGGAGTGCTGCATTAAGGGAGCTCTCTTCACCGGGAAAGAGTGGAAGCGTGTTCTACCTTTCTCAGGATGATAGGTTCATGATTAAGACTTTACGAAAATCTGAAGTCCAGGTTCTTCTGAGAATGCTTCCAAATTATCACCATCATGTTCAGATGTATGAAAACACCCTCATTACCAAATTTTTTGGTCTACATCGTATCAAGCCGGCAGGTGGCCGGAAGGTTCGATTTGTAGTGATGGGGAACATGTTTTGCACAGAATTGCGGATTCATCGTCGGTTTGACTTAAAAGGTTCATCTCAGGGACGATCAACAGATAAGATTGAAATTGATGAGAACACAACACTGAAAGATTTGGATCTAGAATATGTATTCTATCTGGAACCTTCATGGCGTGAGGCACTTTTAAAGCAAATAGAGGATGACTGCAGATTTTTAGAATCTCAACGTATTATGGATTACAGTCTATTATTGGGACTACACTTCAGGGCACCACAGTATTTAAGATCATACATATCAGGGTCTCAGAATACATCAACAGAAGGCATAGGAACAGCAGGTGATGAAGTGGCATCAGCTGTCGATGATGAAATCTCAAGCTATCCACAGAGTCTGGTATTGGTTGCTCGTGAACCTCATCAAGATGGGAGAGTACTGGGTTCTCATATTCGAGGAAGTGCATTGAGAGCATCTGCTGTGGGTGATGAAGAAGTTGATCTACTTCTTCCTGGGACTGCAAGATTGCAGATACAACTTGGGGTGAACATGCCTGCAAGAGCAGATCGTGTCCCACAAAGAGACACTGATCATAATGCAGGTCAATTGCTTGATGAGGTCTATGATGTGGTTCTCTACCTTGGGATCATAGACATCTTACAAGAATATAATTTTGCCAAGAAAATTGAACACGCTTACAAAGCTTTTCAATTTGACTCTGTTTCAATATCTGCAGTTGAGCCCAAGTTGTATTCTCAGCGTTTCTTGGATTTTATTCAGAAAGTGTTTCCACCAAACTCAAATGAAATGGAACCATAA___CCAAATTGTAAGAATATGCAATTCTGCATATCCATTTTCTTGTATGGGAGAAAATGCAGAACAGTATTCGTACCATGATTTAATGCTATCTACCCAAAATTTCATGCTCATCCATTGGTGGTTGTAGCATTCCCGTGAATTTGGGTTCTAGCACCTTGCTTTATTCTTCCCATGTATTGTTCTTAATGTTCAATGTATTCTATTTATTTCTCGTGGAAAATCGCTGAAATCTGA

Fln Alignment:

sp_v1.1_unigene230___GKSGSVFYLSQDDRFMIKTLRKSEVQVLLRMLPNYHHH----VQMYENTLITKFFGLHRI---KPAGGRKVR--FVVMGNMFCTELRIHRRFDLKGSSQGR------STDKIEIDENTTLKDLDLEYVFYLEPSWREALLKQIEDDCRFLESQRIMDYSLLLGL
D5ABH6_____________GKSNVFFAKSLDERFIIKQVTRTELESFIKFASEYFKYLSDSLSSGSPTCLAKILGIYQVTIKNTKSGKEIRMDLMVMENLLFGR-NVTRVYDLKGSGRSRYNADSSGNNKVLLDQN-LLETMPTSPIF-LGNKAKRLLERAVWNDTSFLASIDVMDYSLLVGV

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
732		90	10		0.90298
736	10		90		0.90298
737	90	10			0.90298
738	90	10			0.90298
739			90	10	0.90298
743	90			10	0.90298
744			10	90	0.90298
746		10	90		0.90298
748		10	90		0.90298
749	90			10	0.90298
750		10	90		0.90298
751	10	90			0.90298
886		11		88	0.923564
889			11	88	0.923564
893		11		88	0.923564
894		11	88		0.923564
895	88			11	0.923564
896			88	11	0.923564
898			11	88	0.923564
901	88		11		0.923564
903		11	88		0.923564
906		11	88		0.923564
907	11			88	0.923564
974		30		70	1.0
1094	57			42	1.0
1103		14		85	0.993533
1158	87		12		0.992554
1159		87		12	0.992554
1160	87		12		0.992554
1162			12	87	0.992554
1214	50		50		1.0
1246		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain