SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene228

Length: 2496 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene228
ATGGGGGATTGCATGTTTCGTTCACATGCAACTGGGTCAGAGGCGTACACCACATGATCATCGTCGTCTACAGCTCAACACAGCAAAGCAGAGCAGAAACCTCACCACAGCAAAGCAGAGCAGAAATCGAAAGAAAATAATAAGAAGGATGATTACTGTGTAGAATTATGTAGCTTAATATACCTTAACCTCTTGAAGCGAAGAGGAGACGAGATTTAGAGCCAACGGCCATTTCTTCAATTAATTCCCCGCTATCTATCCATCGAGATCGATCGATCAGAGCCAATATCAGATCAAACAGCACATGCATTCAACAAGAGATGGAGCATAGTAGCTCTGAGTATTGTCTTTGCAATCGAATGCGTTTATGGGAATTTCCAGATCAGTATGTCATTGAACCTGCAGATGGTGGACATCATCAGCTTTTATCTATTAGTCGGGTGGATGGAGCATTGCAATCAATTGGAGAAATGCCCTTCATTCATTCCAGTCAAGTTCCTAAAACGCAGACGATTTTTGGGCTGGTTGGAATTATTAAACTTTTTGCAGGGGCATATGCTCTAGTTATTACTGCTCGTGAGTGTGTTGGATCTTATGGGGGCCATCCCATTTATAAGGTTGTATCAATGCGCTTTCTGCCCTGCAATTCTGCTTTGAAGAAGTCTACTCCTCAGGAGAAGAAAGCTGAGGCTGATTTTGCAAATCTACTTCGAGCTGCAGAGAAAATTCCTGGCCTGTACTTCTCATATGATGTTGAGTTAACTCTGAATGCACAAAGATCTTACCACCTGGAAGCGGCGTCTAAGATGGTGCCTCTGTGGAAACAGGCAGACACTAAATATCTGTGGAACAGACGCATGATAGAGGAGCTTACTCAGCACAAGCTTGACCGATATATACTCCCTGTAATTCAAGGAAGCTTTCAGACATTTCAGACAGTTATTGGAAAAACAACTTTAAATGTGACTTTGATAGCACGGAGATGCATGCACCGAACAGGGACTCGTATGTGGCGCAGAGGAGCTGATTTAGATGGAAATGTTGCCAACTTTGTGGAAACTGAACAAATCTTGGAGGCAAATGGATATCTAGCATCTTATGTGCAAGTAAGGGGTTCTATCCCACTATTATGGGAGCAAGTCGTGGACCTGACATATAAGCCTGGCTTCAAATTAATAAATCTGGAAGATGCACCCAAGGTAGTGGAGCGCCACTTTTCTGATTTGAGGAGAAGATATGGATCTGTTACAGCTGTAGATTTAGTCAATCAGCATGGACGTGAAGGCCTTTTGAGCCAAGCTTATGCGAATGCTGTGCAAGCCCTTGTCAATGATGAGATAAGATATGTGCAGTTTGATTTTCATAGAGTCTGTGGACATGTACACTTTGAGCGCTTGTCCCTTCTGTATGACCAAATTGCGGATGATGTTAAGAAGCACAGCTACTTTTTGTTGTCTATTAGACAAGAAACACTCGGGGAACAAAAAGGTGTCATAAGAAGCAATTGTATTGATTGTTTGGATCGCACCAATGTGACACAGAGCATGCTGGGAAGGAAATCTATGGAAGCCCAACTTCAGCGAATTGAAATATTTCGACAAGATGAAACTATAAACCAGCACATGAATTTTGACAATTTATTTAAAATTTTGTGGGCTAATCACGGAGATGAAATAAGCATCCAATATTCCGGTACTCCTGCATTGAAGGGGGATTTTGTTAGGCATGGTCAACGTACAATCCAAGGGATACTTGGTGATGGTCATAATGCCCTTGCACGATACTATTTCAACAACTTTTGTGATGGTGTAAAACAGGATGCAATTGACCTTCTGCAAGGTCACTATACTCTGAGTCGTGAAATCTCATCTCCATCCCAAGGCAGAGGATTGGCAACTATGGCTTCAGTTCCATTGGCTTCAGCTTTGGTGCTTGCTAGTATTGTGTTAGCAACTATGTCTCTGCGGCAAGGAAGACAAGATTCACGGCGATTCATATTTTCTGCTTTCTGGGCTAGCCTGGCTTTGGGTATCGTGACTTTTGTACGGATCAATGGTCGTGTGTTTTGTAATCGGCCTCGCCTGCAGAAGCTGCTCTGACACTAAACATCTGGAGCAAGAATTTGATGTAATGCACAGTGTTCTTTTGTTTTAGTCACTTTCTGTGATCAGTTCATCACCATTTTGGACAATCAAATTGCAATATATTTTGCTAGAGTCATCCGTCAGCATTTGTTGTAGAAATTAGAAGTAGCATTCGATGGAACAAAGCAGTTTCTTGATGACTATATAATTCTTTAATAATAACTTCTGAGTGTATCTTCTGTTTGCAAAGACTGCGTTTTTCCTTTCACTATTTATTTTTCCTGCCTTTTCTTGGCAGAATATTTTATCTGATCTACTGAATTTTTTTCTCTACGTTTAGACATCCCTATTTTTTAGGGAGACAATGGATTGGATTGATTCAAGAACTTAATATTAATTGACCATTTTCTCC

Ace file of the UniGene sp_v1.1_unigene228

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RHD4; RHD4 (ROOT HAIR DEFECTIVE4); phosphatidylinositol-4,5-bisphosphate 5-phosphatase/ phosphatidylinositol-4-phosphate phosphatase	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	phosphoinositide phosphatase family protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	root hair cell tip growth	GO:0048768	Biological Process	74%
Blast2go	phosphatidylinositol-4-phosphate phosphatase activity	GO:0043812	Molecular Function	74%
Blast2go	plasma membrane of cell tip	GO:0031520	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Synaptojanin, N-terminal	IPR002013	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL30

Fln msg:

Fln protein: MEHSSSEYCLCNRMRLWEFPDQYVIEPADGGHHQLLSISRVDGALQSIGEMPFIHSSQVPKTQTIFGLVGIIKLFAGAYALVITARECVGSYGGHPIYKVVSMRFLPCNSALKKSTPQEKKAEADFANLLRAAEKIPGLYFSYDVELTLNAQRSYHLEAASKMVPLWKQADTKYLWNRRMIEELTQHKLDRYILPVIQGSFQTFQTVIGKTTLNVTLIARRCMHRTGTRMWRRGADLDGNVANFVETEQILEANGYLASYVQVRGSIPLLWEQVVDLTYKPGFKLINLEDAPKVVERHFSDLRRRYGSVTAVDLVNQHGREGLLSQAYANAVQALVNDEIRYVQFDFHRVCGHVHFERLSLLYDQIADDVKKHSYFLLSIRQETLGEQKGVIRSNCIDCLDRTNVTQSMLGRKSMEAQLQRIEIFRQDETINQHMNFDNLFKILWANHGDEISIQYSGTPALKGDFVRHGQRTIQGILGDGHNALARYYFNNFCDGVKQDAIDLLQGHYTLSREISSPSQGRGLATMASVPLASALVLASIVLATMSLRQGRQDSRRFIFSAFWASLALGIVTFVRINGRVFCNRPRLQKLL*

Protein Length: 594

Fln nts: ATGGGGGATTGCATGTTTCGTTCACATGCAACTGGGTCAGAGGCGTACACCACATGATCATCGTCGTCTACAGCTCAACACAGCAAAGCAGAGCAGAAACCTCACCACAGCAAAGCAGAGCAGAAATCGAAAGAAAATAATAAGAAGGATGATTACTGTGTAGAATTATGTAGCTTAATATACCTTAACCTCTTGAAGCGAAGAGGAGACGAGATTTAGAGCCAACGGCCATTTCTTCAATTAATTCCCCGCTATCTATCCATCGAGATCGATCGATCAGAGCCAATATCAGATCAAACAGCACATGCATTCAACAAGAG_-_ATGGAGCATAGTAGCTCTGAGTATTGTCTTTGCAATCGAATGCGTTTATGGGAATTTCCAGATCAGTATGTCATTGAACCTGCAGATGGTGGACATCATCAGCTTTTATCTATTAGTCGGGTGGATGGAGCATTGCAATCAATTGGAGAAATGCCCTTCATTCATTCCAGTCAAGTTCCTAAAACGCAGACGATTTTTGGGCTGGTTGGAATTATTAAACTTTTTGCAGGGGCATATGCTCTAGTTATTACTGCTCGTGAGTGTGTTGGATCTTATGGGGGCCATCCCATTTATAAGGTTGTATCAATGCGCTTTCTGCCCTGCAATTCTGCTTTGAAGAAGTCTACTCCTCAGGAGAAGAAAGCTGAGGCTGATTTTGCAAATCTACTTCGAGCTGCAGAGAAAATTCCTGGCCTGTACTTCTCATATGATGTTGAGTTAACTCTGAATGCACAAAGATCTTACCACCTGGAAGCGGCGTCTAAGATGGTGCCTCTGTGGAAACAGGCAGACACTAAATATCTGTGGAACAGACGCATGATAGAGGAGCTTACTCAGCACAAGCTTGACCGATATATACTCCCTGTAATTCAAGGAAGCTTTCAGACATTTCAGACAGTTATTGGAAAAACAACTTTAAATGTGACTTTGATAGCACGGAGATGCATGCACCGAACAGGGACTCGTATGTGGCGCAGAGGAGCTGATTTAGATGGAAATGTTGCCAACTTTGTGGAAACTGAACAAATCTTGGAGGCAAATGGATATCTAGCATCTTATGTGCAAGTAAGGGGTTCTATCCCACTATTATGGGAGCAAGTCGTGGACCTGACATATAAGCCTGGCTTCAAATTAATAAATCTGGAAGATGCACCCAAGGTAGTGGAGCGCCACTTTTCTGATTTGAGGAGAAGATATGGATCTGTTACAGCTGTAGATTTAGTCAATCAGCATGGACGTGAAGGCCTTTTGAGCCAAGCTTATGCGAATGCTGTGCAAGCCCTTGTCAATGATGAGATAAGATATGTGCAGTTTGATTTTCATAGAGTCTGTGGACATGTACACTTTGAGCGCTTGTCCCTTCTGTATGACCAAATTGCGGATGATGTTAAGAAGCACAGCTACTTTTTGTTGTCTATTAGACAAGAAACACTCGGGGAACAAAAAGGTGTCATAAGAAGCAATTGTATTGATTGTTTGGATCGCACCAATGTGACACAGAGCATGCTGGGAAGGAAATCTATGGAAGCCCAACTTCAGCGAATTGAAATATTTCGACAAGATGAAACTATAAACCAGCACATGAATTTTGACAATTTATTTAAAATTTTGTGGGCTAATCACGGAGATGAAATAAGCATCCAATATTCCGGTACTCCTGCATTGAAGGGGGATTTTGTTAGGCATGGTCAACGTACAATCCAAGGGATACTTGGTGATGGTCATAATGCCCTTGCACGATACTATTTCAACAACTTTTGTGATGGTGTAAAACAGGATGCAATTGACCTTCTGCAAGGTCACTATACTCTGAGTCGTGAAATCTCATCTCCATCCCAAGGCAGAGGATTGGCAACTATGGCTTCAGTTCCATTGGCTTCAGCTTTGGTGCTTGCTAGTATTGTGTTAGCAACTATGTCTCTGCGGCAAGGAAGACAAGATTCACGGCGATTCATATTTTCTGCTTTCTGGGCTAGCCTGGCTTTGGGTATCGTGACTTTTGTACGGATCAATGGTCGTGTGTTTTGTAATCGGCCTCGCCTGCAGAAGCTGCTCTGA___CACTAAACATCTGGAGCAAGAATTTGATGTAATGCACAGTGTTCTTTTGTTTTAGTCACTTTCTGTGATCAGTTCATCACCATTTTGGACAATCAAATTGCAATATATTTTGCTAGAGTCATCCGTCAGCATTTGTTGTAGAAATTAGAAGTAGCATTCGATGGAACAAAGCAGTTTCTTGATGACTATATAATTCTTTAATAATAACTTCTGAGTGTATCTTCTGTTTGCAAAGACTGCGTTTTTCCTTTCACTATTTATTTTTCCTGCCTTTTCTTGGCAGAATATTTTATCTGATCTACTGAATTTTTTTCTCTACGTTTAGACATCCCTATTTTTTAGGGAGACAATGGATTGGATTGATTCAAGAACTTAATATTAATTGACCATTTTCTCC

Fln Alignment:

sp_v1.1_unigene228___MRLWEFPDQYVIEPADGGHHQLLSISRVDGALQSIGEMPFIHSSQVPKTQTIFGLVGIIKLFAGAYALVITARECVGSYGGHPIYKVVSMRFLPCNSALKKSTPQEKKAEADFANLLRAAEKIPGLYFSYDVELTLNAQRSYHLEAASKMVPLWKQADTKYLWNRRMIEELTQHKLDRYILPVIQGSFQTFQTVIGKTTLNVTLIARRCMHRTGTRMWRRGADLDGNVANFVETEQILEANGYLASYVQVRGSIPLLWEQVVDLTYKPGFKLINLEDAPKVVERHFSDLRRRYGSVTAVDLVNQHGREGLLSQAYANAVQALVNDEIRYVQFDFHRVCGHVHFERLSLLYDQIADDVKKHSYFLLSIRQETLGEQKGVIRSNCIDCLDRTNVTQSMLGRKSMEAQLQRIEIFRQDETINQHMNFDNLFKILWANHGDEISIQYSGTPALKGDFVRHGQRTIQGILGDGHNALARYYFNNFCDGVKQDAIDLLQGHYTLSREISSPSQGRGLATMXXXXXXXXXXXXXXXXXTMSLRQGRQDSRRFIFSAFWASLALGIVTFVRINGRVFCNRPRLQKL
B8LL30_____________MQLLEYPEEYIIKPSDGGSYQPLSISRLDGSLNLIGEAPITSPMEMT---VIYGVVGAIKLLAGTYVFVITSRKQVGMHQGFPVFQIMSLKFLSCNKALKLSTAEEKRDEAYFVSLLKIVETSSGLYFSYQTDLTLNAQRSHNFAGLRKIPPLWKQADPRFLWNRSLIEELIEAKLEPYILPVIQGSFQTIQVTLKESLVRVTLISRRCIRRIGTRMWRRGADLEGHVANFIETEQLLEVDGFITSYLQVRGSIPVLWEQIVDLTYKPKLNIINTDETPKVVERHFRDLVQRYGPVLAVDLADRKGNEGPLSLAYADAVQSL--KHIRYISFDFHRICGLVHFQRLQLLYEQLAEDLKKQGYFLTNPAGEMIEEQKGIVRVNCIDCLDRTNVSQSFLAQKSFDSQLQRIGLFSTSECMLQHSNIHREFKILWANHGDEVSIQYSGTHALKGDFVRYGRQTVSGLIKDGLSALARYYLNNFHDGIRQDAMDLVAGHYTVSRGNPSPFHLNGFESLAYLPVASVLIVGGLTITTLSLHQAR-DAHRFLCSVVWAGVTAGVMAIVKANGRLFCSRPRLCKL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
452	20		80		0.995493
524		87		12	0.992554
1590		10		90	0.90298
2194	20			80	0.995493
2198	20	80			0.995493
2374		88		11	0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain