SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene219

Length: 1718 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene219 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	riboflavin-specific deaminase, putative (EC:3.5.4.26 1.1.1.193)	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Blast2go	Bacterial bifunctional deaminase-reductase, C-terminal	IPR002734	-	79%
Blast2go	Riboflavin biosynthesis protein RibD	IPR004794	-	79%
Blast2go	Riboflavin-specific deaminase, C-terminal	IPR011549	-	79%
Blast2go	Conserved hypothetical protein CHP02464	IPR012816	-	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR04

Fln msg: your sequence is shorter than subject: 413 - 457

Fln protein: KYAMTLDGKIAASTGHAAWVSSKMSRKQVFETRSRSDAVVVGGNTVRRDNPRLTTRQEGGHLPIRIVMSRTLNLPEDANLWDVSSTQTIVATQRGARRDFQRRLASKGVEVVEFDILTPRAVMDYCYDRGFLSVLWECGGALSAPAIAFGVIHKVIAFVAPKIIGGVTAPSPVGELGMVEMTQALNLTDVSFQQIGPDMLISGYLQPIPDLVPTIPAMEATSIVNPITVSTSNGPSIICFYRAWDVYGSFSNFSPHPISMPDSNGDYVIWKSVEHYYQAQKFEGVQDSIAQECIKRIRSAESPEEAAKMGRSLERQRPDLVRHNWGSVKVDIMYRALKAKFSTYSHLSSLLVSTAGSVLVEASPHDLFWGGGREGEGMNHLGRLLMRIRAEILGDNSDSYGMELPAIQSSRT*

Protein Length: 414

Fln nts: CAAATATGCAATGACACTGGATGGTAAGATTGCTGCTAGCACGGGGCATGCAGCATGGGTGAGTAGTAAAATGTCTCGCAAGCAAGTCTTTGAAACACGCAGTAGAAGCGATGCCGTTGTTGTTGGAGGAAATACTGTGCGTCGTGATAATCCACGTTTAACAACTAGACAGGAAGGTGGACATTTACCGATTCGGATTGTTATGTCAAGAACTTTGAATCTACCTGAAGATGCAAATCTTTGGGATGTATCTTCTACTCAAACTATAGTAGCAACACAAAGGGGAGCTCGTAGGGACTTTCAAAGGAGACTCGCATCGAAAGGTGTGGAAGTTGTGGAATTCGACATTCTAACACCAAGAGCTGTCATGGATTACTGCTATGACAGAGGCTTTCTTTCTGTATTATGGGAGTGCGGAGGGGCTTTGTCGGCCCCAGCTATTGCATTTGGTGTTATTCACAAGGTGATTGCCTTTGTTGCCCCTAAGATTATAGGAGGAGTAACTGCTCCATCTCCGGTCGGTGAACTAGGGATGGTGGAAATGACACAAGCACTAAATTTGACGGATGTCTCATTTCAGCAGATTGGACCTGACATGTTAATAAGTGGGTACCTTCAACCTATACCTGATTTGGTGCCGACTATTCCTGCCATGGAGGCGACTTCTATTGTAAATCCTATCACAGTTTCAACATCAAATGGACCAAGCATAATCTGCTTTTACCGGGCTTGGGATGTCTATGGATCATTCTCTAATTTTTCTCCACATCCTATTAGCATGCCTGATTCAAATGGAGATTACGTCATTTGGAAAAGTGTTGAGCACTACTATCAGGCACAGAAATTTGAAGGTGTACAGGATTCTATAGCACAAGAATGCATTAAAAGAATTAGATCTGCAGAAAGCCCAGAAGAAGCTGCGAAAATGGGGAGGTCTTTGGAAAGGCAACGGCCTGATTTGGTACGGCACAACTGGGGCTCTGTTAAGGTTGATATTATGTACAGGGCTTTAAAGGCCAAGTTTTCCACCTATTCCCATTTGTCTTCGCTTTTAGTTTCAACTGCGGGATCTGTTCTAGTTGAAGCTTCTCCTCATGACCTCTTCTGGGGAGGTGGTCGAGAAGGAGAAGGTATGAATCACCTTGGAAGGCTGCTTATGAGGATACGTGCTGAGATCCTTGGAGACAATTCAGACAGTTATGGCATGGAATTACCAGCAATTCAGTCATCAAGAACATGA___AAGTAAATGATAAATATCAGCAACGAAAGCTTTCTGTTTGTCTGTGTATGTTATATGTGAATTGTGATATTCCAGAAAAAAATTACCGGCATTTGACAAGGGATCTTTCCCTTAGTTTCAGATGTAGTTAGCTGCTGCTATTTTTTAAAGCCCTTTGCTTGATTGAAGTTCCTTTGAGAAACGTTGCTGAGGTTCCACTGGGCATAACTGCGAGCATCAAAGAGGTATATAACATTAGTGTCAATTGCTTGAATGGTTTCAAATCTTAACCTTTCAATTCATaTTTTAAAATGAATTGTAATGGCAATGgTATGCTACCAAGTATATGGATGGCAAGAGATATtAAAATTAAGGTTCAGATTGTAGATTTAGTATGCACACTCCTCTTTCTGCAAAAAACAAGTGTGCATAAAAGGAAGGAAAATCAACATTTGTAATGTCATGGCTGCATCTTATGAAATTGGAAAAAGTCAATGAA

Fln Alignment:

sp_v1.1_unigene219___KYAMTLDGKIAASTGHAAWVSSKMSRKQVFETRSRSDAVVVGGNTVRRDNPRLTTRQEGGHLPIRIVMSRTLNLPEDANLWDVSSTQTIVATQRGARRD------------FQRRLASKGVEVVEFDILTPRAVMDYCYDRGFLSVLWECGGALSA--------PAIAFGVIHKVIAFVAPKIIG
B8LR04_____________RFSMSLDGGMLDDLGDGAAEEGGYYSKML----QQYDGVIVSDQTLY-DNLNLLSSEAGAKQPLRIVVTRTLVLPIDSLIFNTDLAPTLVLADEKAIVDNLQSAGKLNGQTMDMLLRQRGVEVVILKKLEIDSVLDICSQRGLCSVFIDSRGLASAGLENFIGKQALEEEAVQKLVIAICPMISG

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
646	11		88		0.923564
673	12		87		0.992554
706	22	77			0.999999
738	77		22		0.999999
749	22		77		0.999999
798		28		71	1.0
800		71	28		1.0
806		28		71	1.0
854		11		88	0.923564
863		37	62		1.0
919		66		33	1.0
1061		33		66	1.0
1091	83		16		0.994512
1104		16		83	0.994512
1105		16	83		0.994512
1106	83	16			0.994512
1108			83	16	0.994512
1123	60		40		1.0
1133		50		50	1.0
1147	75		25		0.996473
1151		25	75		0.996473
1155	75	25			0.996473
1156	25			75	0.996473
1157	25	75			0.996473
1158		75	25		0.996473
1164	75		25		0.996473
1166		20		80	0.995493
1167			20	80	0.995493
1207	40	60			1.0
1213		20		80	0.995493
1333	40		60		1.0
1342	80		20		0.995493
1410		66		33	1.0
1459	80		20		0.995493
1470	80			20	0.995493
1539	57		42		1.0
1566	57		42		1.0
1608		60		40	1.0
1615	40		60		1.0
1627		40		60	1.0
1659		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain