SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene201

Length: 1032 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene201

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[B] COG5531 SWIB-domain-containing proteins implicated in chromatin remodeling	-	-	3.0e-15	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	brg-1 associated	-	-	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SWIB/MDM2 domain	IPR003121	-	0.0	69%
Blast2go	SWIB domain	IPR019835	-	0.0	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0X2

Fln msg: your sequence is shorter than subject: 238 - 299

Fln protein: VSAWAHNEHSSPPQLEANVEVAAGNEESAHMGAKEQNIEEPIKESTLPEGRKRGRPGGLNKICNVSPELQAIVGEPALPRTQIVKQLWTYIRANNLQDPSNKRNIICNDALRMVFDTDSTDMFQMNKLLAKHIWALDSRDDGSEPNAKRMANSNTSGPASPVSISDSLASFLGTRKLETSHEQVVKCLSDYIKENELQDPLDKGKIICDAKLQKLLSCENFVDFEMAKLLAPHFLKG*

Protein Length: 239

Fln nts: TGTCTCAGCTTGGGCTCACAATGAGCATAGCTCTCCTCCTCAGCTAGAAGCTAATGTGGAAGTTGCTGCTGGCAATGAAGAAAGTGCCCACATGGGGGCGAAGGAGCAGAACATTGAGGAGCCCATCAAAGAGAGTACACTTCCTGAAGGCAGGAAAAGAGGAAGACCAGGAGGCCTTAATAAAATTTGTAATGTTTCACCAGAGTTGCAGGCTATTGTTGGTGAACCAGCATTGCCTCGAACCCAGATTGTGAAGCAATTGTGGACATACATTCGGGCAAATAACTTGCAAGATCCAAGTAACAAAAGAAATATCATTTGCAATGATGCATTACGTATGGTCTTCGACACCGATTCAACTGACATGTTCCAGATGAACAAGTTGCTAGCCAAACATATATGGGCACTTGATTCTAGAGATGATGGTTCAGAGCCAAATGCAAAAAGGATGGCAAATAGCAATACCAGTGGCCCTGCTTCACCTGTTTCAATCTCAGACTCCCTTGCTTCCTTTTTGGGTACTAGGAAACTTGAGACGTCCCATGAACAGGTTGTAAAGTGTTTGTCAGATTACATCAAAGAAAATGAATTGCAGGACCCACTAGATAAAGGGAAGATAATTTGTGATGCTAAACTTCAAAAGCTTTTGTCCTGTGAAAATTTTGTTGACTTCGAAATGGCAAAGCTGTTAGCTCCTCATTTCTTGAAAGGATAA___AACTGCAAATGATAGGGCCGCTTCGACCTGTTTAAATCAATCGCATGACAAATTCATGAAGATCAAGGCATTCAGAAGATTCGTTTGGGATGTTGTACTATAACATAGACTTTTTGAGACATTAAACTATTCTACAATTATGCAGTCATGATCTGTGGTTGTGAGAGATTTTGGTGAACATTCAAAACATTATGCATGGGCTATGGGTTCCTTTCCTGTGATGCTTATGTCTAACTACGTTCTTTTTCTGGACAGTATTAACCATTTGAATACTTTGTTTTTCTAGCTGCTGCTTGACAAGTGTTGCTTATTCCTTT

Fln Alignment:

sp_v1.1_unigene201___VSAWAHNEHSSPPQLXXXXXXXXXXXXXXHMGAKEQNIEEPIKESTLPEGRKRGRPGGLNKICNVSPELQAIVGEPALPRTQIVKQLWTYIRANNLQDPSNKRNIICNDALRMVFDTDSTDMFQMNKLLAKHIWALDSRDDGSEPNAKRMANSNTSGPASPVSISDSLASFLGTRKLETSHEQVVKCLSDYIKENELQDPLDKGKIICDAKLQKLLSCENFVDFEMAKLLAPHFLKG
A9P0X2_____________VSAWVHNEHRYHPQLEAKVEEAGRNEENAHMEVKEQNIEEPIKESTLLEGRKRGRPGGLNKICGVSPELQAIVGEPALPRTQIVKQLWTYIRANNLQDPSNKRNIICNDALRMVFDTDSTDMFQMNKLLAKHIWALDSRDDGSEPNAKRTANRNTSGPASPVPISDSLALFLGTDKIETSHEEVVKRLSDYIKENELQDPLDKGKIICDAKLQKLFSCENFVDFEMTKLLAPHFLKG

SNPs (tot: 3)

Position	A %	G %	T %	Probability
770		50	50	1.0
985	25	25		0.995533
986	25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain