SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene195

Length: 2554 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene195
CGTCGTGACCTTGGCTGTCACTCATTACTGGAGATTATTGTTGACTAGATCTCTTTTCGCTTCTGCTCCTTTCTCTGTGATTTCTCCCGCCCCTTCTTTCTCCATGCGCTTTTGAACCTGCCTAAGCACGTGAAGTTCTGCTCTCTATTGCGGACAGCGACGTTTTGCTGGCAGGTCGCAAGTTCAAGTCCAGGGGATAGCAAAGCTAGGAGCACTTCTCAAGCAGAACAAACATGTACAACGATTGCATCTTCTGACAATAAAGATTCTGAACTTGATTTCATCGATCCATTCGGAGTTGGAAGGCAAGGGAAGCTGTGGAGTATGGGAGAAAGTAAGAATGTAATGGGGCAGATTTGGCAACTGCTTATTATAGTGATCTTACTTTTCTCAACTTCGCCAAAAGTTGGAGCTTCAGATCAGCCTCTTTCCAAAATTGAAATTCAGAAGACTACTGTTGCTCTTCACAGTTCTGCTCACATTGAAGTCACTCCCAATCTTCTTGGCATCAAGGGTGAAACAGTTGAGTGGGTGACTGTAAAATTCAACCACCCTTCTCCATCAGCAAGTGATTGGATTGGAGTTTTCTCTCCAGCAAAATTCAATGGCTCTGTATGTTCACCAGAAAGTGGACCAGAGAGCGATCAGGTTCCATACTTATGCACCGCACCAATAAAGTTCCAATATGCAAATTTTTCAGCACACAACTATGTTCGGATAGGAAATGGATCGTTGAAGCTTCAATTGATAAATCAACGAGCTGACTTTGCCTTTGCATTGTTTACGGGTGGACTTTCTAATCCTGTGTTGTTGGCAATTTCAAATACTGTCAGATTTGTGGATCCAAAGTCTCCAGTTTATCCACGCATTGCTCAGGGAAAATCTTGGGATGAAATGGTGGTTACATGGACAAGTGGTTATGGAATTGAGGAAGCGACACCTATTGTTCAGTGGGGTCCTCAAGGAGAGGAGTCAAAATTTTTGTCCCCAGCTGGGACGTTGACATTCGGTCGTAACAGCATGTGTGGTGCACCTGCTCGTACTGTTGGCTGGCGTGACCCTGGTTTTATACACACGAGTTTTCTAAATGACTTATGGCCAAACATGAAATATTATTACAGAGTTGGTCATAGGCTATTCAACGGTTCATATGTCTGGGGAAAAGTAAATTTATTTACATCATCTCCATATCCTGGACAAGATTCTCTACAACGTGTGATTATTTTTGGGGACATGGGGAAGGCAGAACGTGATGGGTCTAATGAGTATAATAACTTCCAGCCCGGGTCTCTTAACACTACTGATAGGCTAGTTGAGGACTTGGAGAATATTGACATAGTTTTCCATATTGGAGACATTGTTTATGCAAATGGATACATCTCTCAATGGGATCAATTTACATCACAAATAGAGCCTATTGCTTCACATGTTCCTTACATGATAGCCAGTGGAAACCATGAACGTGATTGGCCAAATACAGGTTCTTTCTATAAGAACCTTGATTCAGGTGGAGAATGTGGTGTCCCAGCTCAAACCATGTTTTATGTGCCTACAAATAACAGGGACAAGTTTTGGTACTCTACCGACTATGGCATGTTCCATTTCTGTATTGCTGATTCAGAACATGATTGGCGAGAGGGAACAGAGCAATACAAGTTCATCGAGGAATGTTTTGCATCTGCCGATAGACAGAAGCAGCCCTGGCTTATCTTTATTGCCCATCGTGTTCTAGGCTACTCCTCAGCCTCCTGGTACGCGGAAGAGGGAGCATTTGAAGAGCCTATGGGGAGAGAGATGCTGCAAAAGCTCTGGCAGAAGTATAAAGTGGACCTTGCCTTTTATGGCCATGTTCACAATTATGAGCGAACATGTCCCATCTATGAGAACATATGTGTGAGTTCTGAAAGGTCTCACTATTCTGGTACGTTCAATGCAACCATACACGTAGTGGTTGGTGGGGGAGGTTGTGCCCTAGCTGATTATACTACTCTACAAACCAGTTGGAGTTATTTCAAGGACCATGATTATGGATTTGTTAAGCTCACGGCTTTTAATCATTCTTCTTTGCTGCTCGAGTACAAGAAAAGTTCAGATGGGAAAGTTTATGATCAGTTTTGGATAACAAGAGAGTACAGGGATATTCTCGGATGTGATACCATTGGCAACTGCCCCTCTACTACCTTAGCTTCATAAATTGGGATACTCATAATAATAATAAAATTAAAAGAATATTATGCCCCTGGGGTATTTTGGGACATTCGTTCCACACTTATTGTGGATTTGGTGGAAAGATGGGTTCAGTCTTGTTTGACTTCACTGTCAAAGTTATATGGTTTCTCATATGAAGATTACAAGGTCCTACCATGTTCAAAGATTTTATGTGTCTCCATCCAAGTGTGGTTACATTAAATTATTCATTCATTCCCTTCTATCTAATGAATAAAATGCAATTCTTATATGTCAAATTAATGCAATTGTTATGTTCAATTTGGGTGAACATGAAATCAGATGTAATCATACACAGAATAGAATGGAACAGTTAGTATTACCAGAC

Ace file of the UniGene sp_v1.1_unigene195

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Hydrolase, putative n=1 Tax=Ricinus communis RepID=B9RED8_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	protein	-	-	81%

Source	InterPros	Term	Type	Identity
Blast2go	Metallophosphoesterase domain	IPR004843	-	81%
Blast2go	Purple acid phosphatase-like, N-terminal	IPR008963	-	81%
Blast2go	Purple acid phosphatase, N-terminal	IPR015914	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ97

Fln msg: your sequence is shorter than subject: 623 - 641

Fln protein: MGESKNVMGQIWQLLIIVILLFSTSPKVGASDQPLSKIEIQKTTVALHSSAHIEVTPNLLGIKGETVEWVTVKFNHPSPSASDWIGVFSPAKFNGSVCSPESGPESDQVPYLCTAPIKFQYANFSAHNYVRIGNGSLKLQLINQRADFAFALFTGGLSNPVLLAISNTVRFVDPKSPVYPRIAQGKSWDEMVVTWTSGYGIEEATPIVQWGPQGEESKFLSPAGTLTFGRNSMCGAPARTVGWRDPGFIHTSFLNDLWPNMKYYYRVGHRLFNGSYVWGKVNLFTSSPYPGQDSLQRVIIFGDMGKAERDGSNEYNNFQPGSLNTTDRLVEDLENIDIVFHIGDIVYANGYISQWDQFTSQIEPIASHVPYMIASGNHERDWPNTGSFYKNLDSGGECGVPAQTMFYVPTNNRDKFWYSTDYGMFHFCIADSEHDWREGTEQYKFIEECFASADRQKQPWLIFIAHRVLGYSSASWYAEEGAFEEPMGREMLQKLWQKYKVDLAFYGHVHNYERTCPIYENICVSSERSHYSGTFNATIHVVVGGGGCALADYTTLQTSWSYFKDHDYGFVKLTAFNHSSLLLEYKKSSDGKVYDQFWITREYRDILGCDTIGNCPSTTLAS*

Protein Length: 624

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTACTGGAGATTATTGTTGACTAGATCTCTTTTCGCTTCTGCTCCTTTCTCTGTGATTTCTCCCGCCCCTTCTTTCTCCATGCGCTTTTGAACCTGCCTAAGCACGTGAAGTTCTGCTCTCTATTGCGGACAGCGACGTTTTGCTGGCAGGTCGCAAGTTCAAGTCCAGGGGATAGCAAAGCTAGGAGCACTTCTCAAGCAGAACAAACATGTACAACGATTGCATCTTCTGACAATAAAGATTCTGAACTTGATTTCATCGATCCATTCGGAGTTGGAAGGCAAGGGAAGCTGTGGAGT_-_ATGGGAGAAAGTAAGAATGTAATGGGGCAGATTTGGCAACTGCTTATTATAGTGATCTTACTTTTCTCAACTTCGCCAAAAGTTGGAGCTTCAGATCAGCCTCTTTCCAAAATTGAAATTCAGAAGACTACTGTTGCTCTTCACAGTTCTGCTCACATTGAAGTCACTCCCAATCTTCTTGGCATCAAGGGTGAAACAGTTGAGTGGGTGACTGTAAAATTCAACCACCCTTCTCCATCAGCAAGTGATTGGATTGGAGTTTTCTCTCCAGCAAAATTCAATGGCTCTGTATGTTCACCAGAAAGTGGACCAGAGAGCGATCAGGTTCCATACTTATGCACCGCACCAATAAAGTTCCAATATGCAAATTTTTCAGCACACAACTATGTTCGGATAGGAAATGGATCGTTGAAGCTTCAATTGATAAATCAACGAGCTGACTTTGCCTTTGCATTGTTTACGGGTGGACTTTCTAATCCTGTGTTGTTGGCAATTTCAAATACTGTCAGATTTGTGGATCCAAAGTCTCCAGTTTATCCACGCATTGCTCAGGGAAAATCTTGGGATGAAATGGTGGTTACATGGACAAGTGGTTATGGAATTGAGGAAGCGACACCTATTGTTCAGTGGGGTCCTCAAGGAGAGGAGTCAAAATTTTTGTCCCCAGCTGGGACGTTGACATTCGGTCGTAACAGCATGTGTGGTGCACCTGCTCGTACTGTTGGCTGGCGTGACCCTGGTTTTATACACACGAGTTTTCTAAATGACTTATGGCCAAACATGAAATATTATTACAGAGTTGGTCATAGGCTATTCAACGGTTCATATGTCTGGGGAAAAGTAAATTTATTTACATCATCTCCATATCCTGGACAAGATTCTCTACAACGTGTGATTATTTTTGGGGACATGGGGAAGGCAGAACGTGATGGGTCTAATGAGTATAATAACTTCCAGCCCGGGTCTCTTAACACTACTGATAGGCTAGTTGAGGACTTGGAGAATATTGACATAGTTTTCCATATTGGAGACATTGTTTATGCAAATGGATACATCTCTCAATGGGATCAATTTACATCACAAATAGAGCCTATTGCTTCACATGTTCCTTACATGATAGCCAGTGGAAACCATGAACGTGATTGGCCAAATACAGGTTCTTTCTATAAGAACCTTGATTCAGGTGGAGAATGTGGTGTCCCAGCTCAAACCATGTTTTATGTGCCTACAAATAACAGGGACAAGTTTTGGTACTCTACCGACTATGGCATGTTCCATTTCTGTATTGCTGATTCAGAACATGATTGGCGAGAGGGAACAGAGCAATACAAGTTCATCGAGGAATGTTTTGCATCTGCCGATAGACAGAAGCAGCCCTGGCTTATCTTTATTGCCCATCGTGTTCTAGGCTACTCCTCAGCCTCCTGGTACGCGGAAGAGGGAGCATTTGAAGAGCCTATGGGGAGAGAGATGCTGCAAAAGCTCTGGCAGAAGTATAAAGTGGACCTTGCCTTTTATGGCCATGTTCACAATTATGAGCGAACATGTCCCATCTATGAGAACATATGTGTGAGTTCTGAAAGGTCTCACTATTCTGGTACGTTCAATGCAACCATACACGTAGTGGTTGGTGGGGGAGGTTGTGCCCTAGCTGATTATACTACTCTACAAACCAGTTGGAGTTATTTCAAGGACCATGATTATGGATTTGTTAAGCTCACGGCTTTTAATCATTCTTCTTTGCTGCTCGAGTACAAGAAAAGTTCAGATGGGAAAGTTTATGATCAGTTTTGGATAACAAGAGAGTACAGGGATATTCTCGGATGTGATACCATTGGCAACTGCCCCTCTACTACCTTAGCTTCATAA___ATTGGGATACTCATAATAATAATAAAATTAAAAGAATATTATGCCCCTGGGGTATTTTGGGACATTCGTTCCACACTTATTGTGGATTTGGTGGAAAGATGGGTTCAGTCTTGTTTGACTTCACTGTCAAAGTTATATGGTTTCTCATATGAAGATTACAAGGTCCTACCATGTTCAAAGATTTTATGTGTCTCCATCCAAGTGTGGTTACATTAAATTATTCATTCATTCCCTTCTATCTAATGAATAAAATGCAATTCTTATATGTCAAATTAATGCAATTGTTATGTTCAATTTGGGTGAACATGAAATCAGATGTAATCATACACAGAATAGAATGGAACAGTTAGTATTACCAGAC

Fln Alignment:

sp_v1.1_unigene195___VTVKFNHPSPSASDWIGVFSPAKFNGSVCSP------ESGPESDQVPYLCTAPIKFQYANFSAHNYVR---------IG--------NGSLKLQLINQRADFAFALFTGGLSNPVLLAISNTVRFVDPKSPVYPRIAQ-GKSWDEMVVTWTSGYGIEEATPIVQWGPQGEESKFLSPAGTLTFGRNSMCGA---PARTVGWRDPGFIHTSFLNDLWPNMKYYYRVGHRLFNGSYVWGKVNLFTSSPYPGQDSLQRVIIFGDMGKAERDGSNEYNNFQPGSLNTTDRLVEDLE--NIDIVFHIGDIVYANGYISQWDQFTSQIEPIASHVPYMIASGNHERDWPNTGSFYKNLDSGGECGVPAQTMFYVPTNNRDKFWYSTDYGMFHFCIADSEHDWREGTEQYKFIEECFASADRQKQPWLIFIAHRVLGYSSASWYAEEGAF--------EEPMGREMLQKLWQKYKVDLAFYGHVHNYERTCPIYENICVSSERSHYSG-------TFNATIHVVVGGGGCALADYTTLQTSWSYFKDHDYGFVKLTAFNHSSLLLEYKKSSDGKVYDQFWITR
B8LQ97_____________ITISGVH-TPLASDWIAILSPYSVNDTYCPGVKRMYVETG-DIASLPLLCQYPLKFQFL-LADPDYLTCKKKQCQRSIGRWCLWSTCSGTISARVVNIRTDIRIMFFGGGFDFPCILANSELLKFANPRAPLYGHLSSMDSSSTVMRLTWISGDGKP------QYVHYGDGKLALSTVATFT--PNDLCDSFVSPAVDFGWHNPGFIHTALLDGLLPSKSYLYKYG----SDEVGWSTTTIFSTPPAVGSNQLT-FVTYGDMGKAERDGFGEHY-IQPGALQVIDAVEREVHAGKIDMILHIGDISYATGFLAEWDFFLEMIGPVASRVPYMTAIGNHERDFPKSGSYYEGPDSGGECGVPYEMYFQMPVNGKDKPWYSMEHGPVHFTIMSTEHPWDIGSDQFNWIKADLASVDRKRTPWLIFAGHRP-QYSSL-----EGGFIFSTIIPAVDVHFRLVIEPLLLFYQVDLALWGHVHNYERTCAVNNSQCLNYPMRDHGGIDNYKSSTYSAPVHVIIGMSGFELDSFITMTKSWSLVRISEFGYVKVHA-TTGKILVQF-KLPDGRIADQFSLSR

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
2132	80			20	0.995493
2133	80	20			0.995493
2135	80			20	0.995493
2138		20	80		0.995493
2140	80			20	0.995493
2141		80	20		0.995493
2142	80		20		0.995493
2143		20	80		0.995493
2144			80	20	0.995493
2146	80			20	0.995493
2147		20		80	0.995493
2149		20		80	0.995493
2281		14		85	0.993533
2383	14			85	0.993533
2387	83		16		0.994512
2393		83	16		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
2206	2218	ATA ATA ATA ATA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain