SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene192

Length: 3019 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene192
CGTCGTGACCTTGGCTGTCACTCAAGAAAAATAATCAGAGAAATGAACGCTAGCAGAAGTGTCATGGTCGGATTTCCAACTCTGGCGTAAGCGCATCCTTGCTCAACACTCCTCCGTCCATAGCAGAGGAGAGTAGAGCAGGGCAGGGAAAGGATCGGGATCCGGTGAACCGGCCAGCAACAGCAGATTCAGGAACATTCGGAAGATTTAGAGGCCGTGAAAATGCTGAAATTCCTCAAGGGCGTGGTGGCGGGATCTGCGAGCGGAGGACTTAAAGAACTTCCCTACAATATCGGGGAGCCTTACTCATCTGCCTGGGGTTCATGGATACACTATCGAGGAACTTCCAAGGATGATGGCAGTTCGGTATCGATATTTTCTCTGTCAGGAAGTAATGCTCAGGATGGCCATCTGATGGCTGCTCGCAATGGTGTTAAGCGCCTTCGAACTGTTCGGCATCCCAATGTGTTATCATTTCTGCACAGTGCAGAGGTTGAAGTTGTTGAAGGTTCTATTGTCAGGCCAACTATTTATATTGTGACTGAACCTGTCATGCCGCTTTCTGAAAAGATAAAAGAGCTTGGTCTTGAAGGTACACAGAGGGATGAATATTATGCCTGGGGACTGCATCAAATTGCCAAAGCTGTTAGCTTCCTCAACAACGATTGTAAGCTTGTTCATGGTAATGTATGTCTGGAGTCTGTGGTGGTAACACCGACATTGGATTGGAAGCTTCATGCTTTTGATGTTCTCTCTGAATTTGATGGGCATAATGAAGCTGCTACTGGATCCATGCTGCAATTTGAATGGCTTGTTGGAGCACAATATAAGCCAATTGAATTATTGAAGAATGATTGGGCAACAATCAGGAAGTCACCGCCTTGGGCAATGGATTCATGGGGCATGGGTTGCTTGATTTTTGAGTTATTTTCTGCAACTAAGCTGGCTAGAACAGAGGAGCTGCGTAATATTGGGTGTGTCCCAAAGACTTTACTTCCAGATTACCAGAGGCTCTTGAGTTCAACACCAGCAAGGAGACTGAATACTGCAAAATTAATCGAGAATAGTGATTATTTTCACAATAAGCTAGTTGAAACAATTCAATTTATGGAGGTCCTTAATTTAAAAGACAGCGTGGAGAAGGATTCCTTTTTTCGCAAGCTTCCAAATCTCGCTGAGCAGCTACCCCGTCAAATTGTGTTGAAAAAGTTGCTTCCAATGTTGGCATCGTCATTGGAATTTGGTTCAGCTGCTGCTCCTGCTTTAAACTCATTACTGAAATTGGGTTCATGGCTATCAACAGATGAGTTCAATTTAAAGGTCCTGCCAACAATAGTTAAGCTTTTTGCCTCTAATGATCGAGCCATACGAGTTGGCCTTCTGCAACATATTGATCAATATGGAGCTTCATTATCAGCTCAGATTGTTGATGAACAAGTTTATGTTCATGTCGCAACAGGTTTCTCAGATACCTCTGCATTTCTGCGAGAACTTACACTTAAGGCTATGCTGATTCTTATTCCAAAGTTATCCCAACGCACTATTACAGGATCATTGTTAAAGTACCTATCTAAGCTACAGGTGGATGAAGAGCCAGCAATAAGAACAAACACAACAATATTGCTTGGAAATATTGCCAGCTATCTTAATGAGGGGACAAGGAGGCGGGTTTTGATAAATGCATTCACTGTCCGTGCACTTCGTGATGGTTTTGCACCGGCGCGAGCAGCAGGATTGATGGCTCTAAGTGCAACTAGTTCATATTATGACCCTACAGAGATTGCAACTCGCATCTTACCTAATGTTGTCGTGCTGACTATTGATCCAGACAGTGATGTGAGATCTAAAGCTTTCGAGGCGATTGATTTGTTTTTGCAAAGCATGAAACAACATCACGAGAAGGGAGATGCAGCTACAGACAGTGGAGCGCTAACAAACATTGGCAGTGCAAGTTTGCTTGGTTGGGCAATGAGCTCTTTGACATTAAAGGGGAAGGGGTCTGAACAAGTTCTAGCTTCATCTTCCAATTCTGTTGTGGCTTCAGCACACCAAGTAACCACGTCTTCTAACAACTCAGGATTATATGTTTCAGAGACTCCTGCAACACATCTTTCATCTGCAGTTGACCATATTGATCATCCTCCTCCATCTCCAACCTCAACAGATGGATGGGGAGAAATTGATGAAAATGGAGTGCAAGAAGAGGAAAGTGACAAGGATGGGTGGGATGATATAGAAGTAATGGAAGAGAAAAAAACACCTGCTTCTCTTGCAACTATACATGCTGCACAGCAAAGGCCCATTGTCCAAACTAAATTATCGGGTGCAAACAGTTTGCCTTCTAGACATCAAAGCAGAGTATCCAAGGATGTGACCAAGGTAAGTGATGATGAAGATCCTTGGGCTGCAATTGCTGCCCCTCAACCCACAACTAAGGTGAAATCTCTTTCTGTAGCCTCAACAAGCTCCCATGATGATAATGATCCATGGGCTGCCATTGCTGCCCCTCCACCTTCCACTACAGTAAAACCCCTTTCTGCAACTACAACTGCACGTATCAGGTCATCTTCAGAGAACAGCAATAGACCCAATTCAGCAAATATTCATCCTTCAGGTTCCGGAAGAGGGCGTGGTAGTAAGACTGCTCCCATGAAATTGGGTGCACAACGGTTGAGTCGCAACTCTGAGCTGTAAACAAAAAGATGGTTAGATTGATCTCCTTACGTGATTGGTTTGCTAATTTTCCGATATATGTGTAACATTCTTTAGAAATATTAGAAATAAGGTCCCCGGTCCACTTGTAAGCATGAAGGTGATGTTTAGTTGATTCCATCTGTATTGATGAGCACATTGTGCAGTCTATCAGAGATTTTCTGCCTGATTGAATGTATTCTAGTAGTGATTTTTGCTTCTTTTGATTCAAAGCAAGAAGTGCATGGGCATGCCCTAATGTAATCAAAAACTGTACTTTGATTTGAACAGTATCTACATCAGCATATGCAACAAGATGTGTTTTTAG

Ace file of the UniGene sp_v1.1_unigene192 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	HEAT repeat-containing protein; K08876 SCY1-like	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	heat repeat-containing protein	-	-	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRZ8

Fln msg: your sequence is longer than subject: 824 - 527

Fln protein: MLKFLKGVVAGSASGGLKELPYNIGEPYSSAWGSWIHYRGTSKDDGSSVSIFSLSGSNAQDGHLMAARNGVKRLRTVRHPNVLSFLHSAEVEVVEGSIVRPTIYIVTEPVMPLSEKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHGNVCLESVVVTPTLDWKLHAFDVLSEFDGHNEAATGSMLQFEWLVGAQYKPIELLKNDWATIRKSPPWAMDSWGMGCLIFELFSATKLARTEELRNIGCVPKTLLPDYQRLLSSTPARRLNTAKLIENSDYFHNKLVETIQFMEVLNLKDSVEKDSFFRKLPNLAEQLPRQIVLKKLLPMLASSLEFGSAAAPALNSLLKLGSWLSTDEFNLKVLPTIVKLFASNDRAIRVGLLQHIDQYGASLSAQIVDEQVYVHVATGFSDTSAFLRELTLKAMLILIPKLSQRTITGSLLKYLSKLQVDEEPAIRTNTTILLGNIASYLNEGTRRRVLINAFTVRALRDGFAPARAAGLMALSATSSYYDPTEIATRILPNVVVLTIDPDSDVRSKAFEAIDLFLQSMKQHHEKGDAATDSGALTNIGSASLLGWAMSSLTLKGKGSEQVLASSSNSVVASAHQVTTSSNNSGLYVSETPATHLSSAVDHIDHPPPSPTSTDGWGEIDENGVQEEESDKDGWDDIEVMEEKKTPASLATIHAAQQRPIVQTKLSGANSLPSRHQSRVSKDVTKVSDDEDPWAAIAAPQPTTKVKSLSVASTSSHDDNDPWAAIAAPPPSTTVKPLSATTTARIRSSSENSNRPNSANIHPSGSGRGRGSKTAPMKLGAQRLSRNSEL*

Protein Length: 825

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAAAAATAATCAGAGAAATGAACGCTAGCAGAAGTGTCATGGTCGGATTTCCAACTCTGGCGTAAGCGCATCCTTGCTCAACACTCCTCCGTCCATAGCAGAGGAGAGTAGAGCAGGGCAGGGAAAGGATCGGGATCCGGTGAACCGGCCAGCAACAGCAGATTCAGGAACATTCGGAAGATTTAGAGGCCGTGAAA_-_ATGCTGAAATTCCTCAAGGGCGTGGTGGCGGGATCTGCGAGCGGAGGACTTAAAGAACTTCCCTACAATATCGGGGAGCCTTACTCATCTGCCTGGGGTTCATGGATACACTATCGAGGAACTTCCAAGGATGATGGCAGTTCGGTATCGATATTTTCTCTGTCAGGAAGTAATGCTCAGGATGGCCATCTGATGGCTGCTCGCAATGGTGTTAAGCGCCTTCGAACTGTTCGGCATCCCAATGTGTTATCATTTCTGCACAGTGCAGAGGTTGAAGTTGTTGAAGGTTCTATTGTCAGGCCAACTATTTATATTGTGACTGAACCTGTCATGCCGCTTTCTGAAAAGATAAAAGAGCTTGGTCTTGAAGGTACACAGAGGGATGAATATTATGCCTGGGGACTGCATCAAATTGCCAAAGCTGTTAGCTTCCTCAACAACGATTGTAAGCTTGTTCATGGTAATGTATGTCTGGAGTCTGTGGTGGTAACACCGACATTGGATTGGAAGCTTCATGCTTTTGATGTTCTCTCTGAATTTGATGGGCATAATGAAGCTGCTACTGGATCCATGCTGCAATTTGAATGGCTTGTTGGAGCACAATATAAGCCAATTGAATTATTGAAGAATGATTGGGCAACAATCAGGAAGTCACCGCCTTGGGCAATGGATTCATGGGGCATGGGTTGCTTGATTTTTGAGTTATTTTCTGCAACTAAGCTGGCTAGAACAGAGGAGCTGCGTAATATTGGGTGTGTCCCAAAGACTTTACTTCCAGATTACCAGAGGCTCTTGAGTTCAACACCAGCAAGGAGACTGAATACTGCAAAATTAATCGAGAATAGTGATTATTTTCACAATAAGCTAGTTGAAACAATTCAATTTATGGAGGTCCTTAATTTAAAAGACAGCGTGGAGAAGGATTCCTTTTTTCGCAAGCTTCCAAATCTCGCTGAGCAGCTACCCCGTCAAATTGTGTTGAAAAAGTTGCTTCCAATGTTGGCATCGTCATTGGAATTTGGTTCAGCTGCTGCTCCTGCTTTAAACTCATTACTGAAATTGGGTTCATGGCTATCAACAGATGAGTTCAATTTAAAGGTCCTGCCAACAATAGTTAAGCTTTTTGCCTCTAATGATCGAGCCATACGAGTTGGCCTTCTGCAACATATTGATCAATATGGAGCTTCATTATCAGCTCAGATTGTTGATGAACAAGTTTATGTTCATGTCGCAACAGGTTTCTCAGATACCTCTGCATTTCTGCGAGAACTTACACTTAAGGCTATGCTGATTCTTATTCCAAAGTTATCCCAACGCACTATTACAGGATCATTGTTAAAGTACCTATCTAAGCTACAGGTGGATGAAGAGCCAGCAATAAGAACAAACACAACAATATTGCTTGGAAATATTGCCAGCTATCTTAATGAGGGGACAAGGAGGCGGGTTTTGATAAATGCATTCACTGTCCGTGCACTTCGTGATGGTTTTGCACCGGCGCGAGCAGCAGGATTGATGGCTCTAAGTGCAACTAGTTCATATTATGACCCTACAGAGATTGCAACTCGCATCTTACCTAATGTTGTCGTGCTGACTATTGATCCAGACAGTGATGTGAGATCTAAAGCTTTCGAGGCGATTGATTTGTTTTTGCAAAGCATGAAACAACATCACGAGAAGGGAGATGCAGCTACAGACAGTGGAGCGCTAACAAACATTGGCAGTGCAAGTTTGCTTGGTTGGGCAATGAGCTCTTTGACATTAAAGGGGAAGGGGTCTGAACAAGTTCTAGCTTCATCTTCCAATTCTGTTGTGGCTTCAGCACACCAAGTAACCACGTCTTCTAACAACTCAGGATTATATGTTTCAGAGACTCCTGCAACACATCTTTCATCTGCAGTTGACCATATTGATCATCCTCCTCCATCTCCAACCTCAACAGATGGATGGGGAGAAATTGATGAAAATGGAGTGCAAGAAGAGGAAAGTGACAAGGATGGGTGGGATGATATAGAAGTAATGGAAGAGAAAAAAACACCTGCTTCTCTTGCAACTATACATGCTGCACAGCAAAGGCCCATTGTCCAAACTAAATTATCGGGTGCAAACAGTTTGCCTTCTAGACATCAAAGCAGAGTATCCAAGGATGTGACCAAGGTAAGTGATGATGAAGATCCTTGGGCTGCAATTGCTGCCCCTCAACCCACAACTAAGGTGAAATCTCTTTCTGTAGCCTCAACAAGCTCCCATGATGATAATGATCCATGGGCTGCCATTGCTGCCCCTCCACCTTCCACTACAGTAAAACCCCTTTCTGCAACTACAACTGCACGTATCAGGTCATCTTCAGAGAACAGCAATAGACCCAATTCAGCAAATATTCATCCTTCAGGTTCCGGAAGAGGGCGTGGTAGTAAGACTGCTCCCATGAAATTGGGTGCACAACGGTTGAGTCGCAACTCTGAGCTGTAA___ACAAAAAGATGGTTAGATTGATCTCCTTACGTGATTGGTTTGCTAATTTTCCGATATATGTGTAACATTCTTTAGAAATATTAGAAATAAGGTCCCCGGTCCACTTGTAAGCATGAAGGTGATGTTTAGTTGATTCCATCTGTATTGATGAGCACATTGTGCAGTCTATCAGAGATTTTCTGCCTGATTGAATGTATTCTAGTAGTGATTTTTGCTTCTTTTGATTCAAAGCAAGAAGTGCATGGGCATGCCCTAATGTAATCAAAAACTGTACTTTGATTTGAACAGTATCTACATCAGCATATGCAACAAGATGTGTTTTTAG

Fln Alignment:

sp_v1.1_unigene192___MEVLNLKDSVEKDSFFRKLPNLAEQLPRQIVLKKLLPMLASSLEFGSAAAPALNSLLKLGSWLSTDEFNLKVLPTIVKLFASNDRAIRVGLLQHIDQYGASLSAQIVDEQVYVHVATGFSDTSAFLRELTLKAMLILIPKLSQRTITGSLLKYLSKLQVDEEPAIRTNTTILLGNIASYLNEGTRRRVLINAFTVRALRDGFAPARAAGLMALSATSSYYDPTEIATRILPNVVVLTIDPDSDVRSKAFEAIDLFLQSMKQHHEKGDAATDSGALTNIGSASLLGWAMSSLTLKGKGSEQXXXXXXXXXXXXAHQVTTSSNNSGLYVSETPATHLSSAVDHIDHPPPSPTSTDGWGEIDENGVQEEESDKDGWDDIEVMEEKKTPASLATIHAAQQRPIVQTKLSGANSLPSRHQSRVSKDVTKVSDDEDPWAAIAAPQPTTKVKSLSVASTSSHDDNDPWAAIAAPPPSTTVKPLXXXXXXXXXXXXXXXXXXXSANIHPSGSGRGRGSKTAPMKLGAQRLSRNSEL
B8LRZ8_____________MEVLNLKDSVEKDSFFRKLPNLAEQLPRQIVLKKLLPMLASSLEFGSAAAPALNSLLKLGSWLSTDEFNSKVLPTIVKLFASNDRAIRVGLLQHIDQYGASLSAQIVDEQVYVHVATGFSDTSAFLRELTLKAMLILIPKLSQRTITGSLLKYLSKLQVDEEPAIRTNTTILLGNIASYLNEGTRRRVLINAFTVRALRDGFAPARAAGLMALSATSTYYDPTEIATRILPNVVVLTVDPDSDVRSKAFEAIDLFLQSMKQHHEKGDAATDSRTMANVGSASLLGWAMSSLTLKGKGSEQVLASSSNSVVASAHQVTTSSNNAALYVSDTPATNLSSAVDHIDH-PPSPTSTDGWGDIDENGVQEEESDKDGWDDIEVMEEKKPPAPLATIHAAQQRPIVQTKLPGANSLPSRHQSRVSKDVTKVSDDEDPWAAIAAPQPTTKVKSLSVTSASSRDDNDPWAAIAAPPPSTTVKPLSATTTARIRSSSENSNRPNSANIHPSGSGRGRGSKTAPMKLGAQRLSRNSEL

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
1245	14			85	0.993533
1354		85		14	0.993533
1389	85			14	0.993533
1390	14			85	0.993533
1546	11		88		0.923564
1551	88			11	0.923564
1555		11	88		0.923564
1558	88		11		0.923564
1559	88			11	0.923564
1564		11	88		0.923564
1589		87	12		0.992554
1840		10		90	0.90298
1842		90	10		0.90298
2757		14		85	0.993533
2780	14	85			0.993533
2782		85		14	0.993533
2783		85	14		0.993533
2784	14	85			0.993533
2785			14	85	0.993533
2789		14	85		0.993533
2793			14	85	0.993533
2794			14	85	0.993533
2798		14	85		0.993533
2799		85	14		0.993533
2801		14		85	0.993533
2802			14	85	0.993533
2890	90	10			0.90298
2892		11		88	0.923564
2893	10	90			0.90298
2980	57	42			1.0
2981		42		57	1.0
2982		42		57	1.0
2983		42		57	1.0
2984	42	57			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain