SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene189

Length: 1614 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene189

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein (ISS) [Ostreococcus tauri] emb\|CAL56802.1\| putative protein (ISS) [Ostreococcus tauri]	-	-	7.0e-14	43%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	66%
Blast2go	protein	-	-	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Magnesium transporter NIPA	IPR008521	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RQS1

Fln msg: Overlapping hits, possible frame ERROR between 553 and 549,

Fln protein: MWEAILLTVAATAGNNIGKVLQKKGTVGLPPLTLNLKVMRTYALSKTWVAGFCIDILGALLMLRAVSQAPVSVIQPVSGCGLAMLSVFSHFYLKEAMNLLDWIGVAMAATGTIGVGIIGEEQEASTISFRPFAWLIISTLILFVGVA*YIAxxxRERRHRAQELTQTEVVEEIIVGLEAGILFGLAAAISRLGFILSEQGFSKMSIPIGIALSICCSGSGFFYQTKGLKHGRAIVVSTCAAVSSIVTGVLVGMLALGEMLPVAPFSRMLLVLGWSLIIFGVVVLMSSHRLSLLVPQPFRRSVHGRSSTHKNFNLSRSGSLRLWDPSPSTFVSIQASPTKVKT*

Protein Length: 344

Fln nts: ATGGGGAGTACCAGAGAGATTATTAACAAGCATTTACCGACATAATGGGTGGAGCAAGATCTGTGAAGACGCCGAAGCGGATCAATCGTGAAAC_-_ATGTGGGAGGCCATTTTGCTGACCGTGGCCGCGACAGCTGGAAACAATATAGGTAAAGTGTTGCAGAAGAAGGGCACAGTAGGGCTGCCTCCATTGACGCTCAATCTCAAGGTCATGCGGACTTATGCATTAAGCAAAACATGGGTCGCTGGATTTTGTATTGACATTCTTGGGGCCTTGTTGATGCTAAGGGCTGTATCTCAAGCACCAGTTTCTGTCATACAGCCAGTCTCTGGGTGTGGCCTGGCAATGCTTTCTGTCTTTTCACATTTCTATTTAAAGGAGGCTATGAATCTGCTTGACTGGATAGGTGTTGCTATGGCTGCCACTGGCACAATAGGTGTAGGCATCATAGGAGAGGAGCAGGAGGCGTCAACAATCTCTTTTCGTCCATTTGCATGGCTTATTATCTCTACGCTAATTTTGTTTGTAGGGGTTGCTTAATACATTGCTxxxxxxxxxCGTGAACGCCGACATCGAGCTCAAGAGCTGACACAAACAGAGGTGGTTGAGGAGATAATAGTTGGGCTTGAAGCAGGCATCTTATTTGGATTAGCTGCTGCAATTTCCAGATTGGGTTTTATCCTCTCAGAACAAGGCTTTTCAAAAATGTCTATTCCTATTGGAATTGCGCTTAGCATATGCTGCAGTGGCAGTGGCTTCTTTTACCAGACAAAAGGCTTGAAGCATGGACGGGCAATTGTTGTGTCTACATGTGCAGCAGTTTCATCAATTGTGACTGGAGTGCTTGTGGGCATGCTTGCACTTGGTGAAATGTTACCTGTTGCTCCATTTTCACGAATGTTACTTGTACTTGGATGGTCATTGATTATTTTTGGTGTGGTGGTGCTCATGAGCTCTCACAGATTGAGCTTGCTTGTACCACAACCTTTTCGAAGATCTGTACATGGAAGATCAAGCACTCACAAAAACTTCAATCTCTCAAGATCTGGATCATTAAGGCTTTGGGATCCTAGTCCAAGTACCTTTGTGTCAATCCAAGCATCTCCAACGAAAGTGAAAACTTAG___TAAGTTTTGTGACAAGGTCAATCGAGCATGCTTGTTGTAAATTTCATTTGAACTTCACTATACGGACATATCAGCAAAAGGGAAGCCCATTTTCGAACGAGGAAAAAATCTACTCGAAACAGACATTTGTCATACAAATATTAGTTGTCAATGTTGATAAGGGTATATCAATTTTTTATTAATCAATGTGGCCTATCAAACTGTTGGGAGATAAGATCCAATAGTTTTGTATGTTGACGCGACCTCCATCTCAGTAGTTATTATATGTCCTGCTGTTTGTAATAGACCTTAGAGAGAAACGATCATGCTAACATTTGTATTAGATGCATGGAGATTTGAAATTTCGACTTCCAGTGGTCAAGTTATACGAGACTTAGGAATTTAACCTATTCTTGTGTTCGAGTCCTTTGACTGTCCCAGGAAGCGAATTTAATCAGTGAAAATGCAAAGCTTGAAGCATTTGTCATGTAACAAGATCATCTACAAGTCGTTC

Fln Alignment:

sp_v1.1_unigene189___MWEAILLTVAATAGNNIGKVLQKKGTVGLPPLTLNLKVMRTYALSKTWVAGFCIDILGALLMLRAVSQAPVSVIQPVSGCGLAMLSVFSHFYLKEAMNLLDWXXXXXXXXXXXXXXXXXEEQEASTISFRPFAWLIISTLILFVGVA*YIxxxERRHRAQELTQTEVVEEIIVGLEAGILFGLAAAISRLGFILSEQGFSKMSIPIGIALSICCSGSGFFYQTKGLKHGRAIVVSTCAAVSSIVTGVLVGMLALGEMLPVAPFSRMLLVLGWSLIIFGVVVLMSSHRLSLLVPQPFRRSVHGRSSTHKNFNLSRSGSLRLWDPSPSTFV
B9RQS1_____________MWESICLTLAAAAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKSWVIGFLMDICGAMLMLRALSQAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVIDWIGITLAGIGTIGVGAGGEEQEVSSISVFQLPWLAFIVAVLFIGLNGWLxxxKRERREQETMEYEVIEEIIYGLESGILFGMASVISKMAFVFLEQGFSRMLVPICISISICSSATGFYYQTRGLKHGRAIVVSTCAAVASIVTGVLAGMLALGERLPSAPAARLSLLLGWLLIIVGVILLVSSTRLLRQLPRPLRHLM--RSKADWNFNLSRSGSIRVKDSNPSAVI

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
489		20		80	0.995493
491		20	80		0.995493
492	20	80			0.995493
545			75	25	0.996473
597	25		75		0.996473
636			33	66	1.0
638	66	33			1.0
639			33	66	1.0
641			33	66	1.0
642	33		66		1.0
643		33	66		1.0
644	66	33			1.0
647	66		33		1.0
659		50		50	1.0
662	33	66			1.0
725	20		80		0.995493
907	11			88	0.923564
912			11	88	0.923564
1059			14	85	0.993533
1068	85		14		0.993533
1096		42	57		1.0
1145	42		57		1.0
1152	42	57			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain