SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene185

Length: 1365 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene185

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transferase, transferring glycosyl groups, putative (EC:2.4.1.134)	-	-	50%
FL-Next	sp=Beta-1,3-galactosyltransferase 15; Arabidopsis thaliana (Mouse-ear cress).	-	-	46%
Blast2go	transferring glycosyl	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	Lewis a epitope biosynthetic process	GO:0010493	Biological Process	64%
Blast2go	UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity	GO:0010488	Molecular Function	64%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Blast2go	Galectin, carbohydrate recognition domain	IPR001079	-	64%
Blast2go	Glycosyl transferase, family 31	IPR002659	-	64%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	64%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	64%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q8L7F9

Fln msg: Distance to subject end: 216 aas, your sequence is shorter than subject: 425 - 643

Fln protein: MKKWFGGVLIAFLIGVLVLRYSFTKNVPQKSSPFSFFTEHPSEALHLERNVVIQSSEPPESIDQVELSSSIAAETLNGLFTQRNLSKEENQVKLTWNEMKKLISRSDLLPEAREGVKEAVVAWRDLMGSIEQEKASKVAENGSFKNTTKDKQCPFSLSAMNVTDNQAGGFLLQIPCGLTQDSSITIVGIPSGLLGKFQIELTGAQLPEEPDPPIILHYNVRLQGDKLTEDPVIVQNTWTVAHDWGDEERCPHHSDSKTKVDGLSRCNERVGEATRGKHPDGKDLGIAKWSGISRKGSRDNFWFPFVDGYPFAATLWVGLEGFHMTVNGKQITSFEYRESLEPWLVSGVRIAGDLKLLSVLANGLPTSEDLDLVVDLESLKAPPLIPLKKLPMFIGVFSTGNNFERRMAVRRSWMQYQAVRTGEVA

Protein Length: 426

Fln nts: ATGTCTAGCTCCCATCTCTACAAGGACTCAGAGTACTTAGATTGAATAGAGTGAAGCAGTATGAAGAACGTCGTGGTTGGTGTTAGTGC_-_ATGAAGAAGTGGTTTGGAGGTGTGCTGATTGCTTTCTTAATTGGAGTTTTGGTCCTTAGGTATAGTTTTACAAAGAATGTTCCCCAAAAGTCATCACCTTTTAGTTTTTTCACTGAGCATCCTTCAGAAGCACTTCATCTAGAGCGCAATGTTGTTATTCAGTCTTCTGAACCTCCAGAAAGCATTGATCAAGTGGAGCTGTCCTCTTCCATTGCTGCCGAAACACTTAATGGTCTTTTCACCCAAAGAAATCTTTCCAAGGAAGAGAATCAAGTTAAACTAACATGGAATGAAATGAAGAAATTGATTTCTCGCTCAGACCTTTTACCTGAAGCAAGGGAGGGTGTAAAAGAGGCAGTGGTTGCATGGAGGGATCTTATGGGATCTATTGAACAGGAGAAAGCATCCAAAGTGGCTGAGAATGGCAGCTTTAAGAATACGACAAAAGATAAACAGTGCCCCTTTTCTCTTAGTGCTATGAATGTGACAGATAATCAGGCAGGTGGTTTTCTGTTGCAGATTCCTTGTGGTCTTACTCAAGATTCCTCTATCACAATTGTTGGCATTCCAAGCGGGCTTCTCGGTAAATTCCAAATTGAACTTACAGGGGCACAACTTCCAGAGGAGCCAGATCCTCCTATTATATTGCATTATAATGTGCGTCTCCAAGGAGATAAGCTTACAGAGGACCCTGTCATAGTGCAAAATACATGGACCGTAGCACATGACTGGGGTGACGAGGAACGCTGTCCTCATCATTCTGATAGTAAAACAAAAGTGGATGGGCTCAGTCGATGCAATGAACGAGTTGGAGAAGCAACTAGAGGAAAACATCCAGATGGAAAAGATCTTGGGATTGCCAAATGGTCAGGTATTTCAAGGAAGGGTTCAAGAGATAATTTTTGGTTTCCATTTGTGGATGGTTATCCATTTGCGGCCACATTATGGGTTGGCCTGGAGGGCTTTCACATGACAGTCAATGGGAAACAAATTACGTCATTTGAGTATCGCGAGAGTCTTGAGCCATGGCTGGTTAGTGGAGTGAGAATAGCAGGCGATTTAAAGCTACTTTCTGTACTGGCAAATGGGTTGCCAACATCAGAAGATCTGGACCTTGTTGTTGATTTGGAGTCTCTCAAGGCACCTCCTTTAATTCCTCTGAAGAAACTTCCAATGTTCATTGGAGTCTTTTCTACAGGAAACAATTTTGAACGCAGGATGGCAGTTCGAAGGTCTTGGATGCAGTATCAAGCTGTACGAACCGGAGAAGTAGCAG

Fln Alignment:

sp_v1.1_unigene185___MKKWFGGVLIAFLIGVLVLRYSFTKNVPQKS---SPFSFFTEHPSEALHLERNVVIQSSEPPESIDQVELSSSIAAETLNGLFTQRNLSKEENQVKLTWNEMKKLISRSDLLPEAREGVKEAVVAWRDLMGSIEQEKASKVAENGSFKNTTKDKQCPFSLSAMNVTDNQAGGFLLQIPCGLTQDSSITIVGIPSGLLGKFQIELTGAQLPEEPDPPIILHYNVRLQGDKLTEDPVIVQNTWTVAHDWGDEERCPHHS-DSKTKVDGLSRCNERVGEATRGKHPDGKDLGIAKWSGISRKGSRDNFWFPFVDGYPFAATLWVGLEGFHMTVNGKQITSFEYRESLEPWLVSGVRIAGDLKLLSVLANGLPTXXXXXXXXXXXXXXXXXXXXXXXXXMFIGVFSTGNNFERRMAVRRSWMQYQAVRTGEVA
Q8L7F9_____________MKRFYGGLLVVSMCMFLTVYRYVDLNTPVEKPYITAAASVVVTPNTTLPMEWLRITLPDFMKEARNTQEAISGDDIAVVSGLFVEQNVSKEEREPLLTWNRLESLVDNAQSLVNGVDAIKEAGIVWESLVSAVEAKKLVDVNENQTRKG--KEELCPQFLSKMNATEADGSSLKLQIPCGLTQGSSITVIGIPDGLVGSFRIDLTGQPLPGEPDPPIIVHYNVRLLGDKSTEDPVIVQNSWTASQDWGAEERCPKFDPDMNKKVDDLDECNKMVGGEINRTSSTSLQSNTSRGVPVAREASKHEKYFPFKQGFLSVATLRVGTEGMQMTVDGKHITSFAFRDTLEPWLVSEIRITGDFRLISILASGLPTSEESEHVVDLEALKSPTLSPLRPLDLVIGVFSTANNFKRRMAVRRTWMQYDDVRSGRVA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
965	80		20		0.995493
1118	10		90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain