SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene183

Length: 1314 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene183

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BHLH transcription factor PTF1-like protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6EPZ6_ORYSJ	-	-	7.00649e-44	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	bhlh transcription factor ptf1-like protein	-	-	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helix-loop-helix DNA-binding domain	IPR001092	-	0.0	61%
Blast2go	Helix-loop-helix DNA-binding	IPR011598	-	0.0	61%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSU4

Fln msg: STOP codon was not found. Distance to subject end: 24 aas, your sequence is longer than subject: 417 - 333

Fln protein: MSLLPPGIGGQGLNSQENDPYPYDDSQFLANRIRQHQLSGNSSMNQTPNQASQGINETNTSPGRSMVLQLSTGSASASQLLASMGNSPRGTAVMTRSPSTGGSCNGSDGGMLPLPLSLGQAGKSGDINESRSRDEIEASFKSANNARDSNLGGLFPPFAGSPRGVRPTGQNFHTQSGQVPMQVYGGMPQPQHQNPSPTGVGAAPPVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAGAVAPLVADIPAEGANAPQGTRTNSSQNSSPDGLALTERQVAKLMEEDMGSAMQYLQGKGLCLMPISLASAINNSGARPQAPSTPSLQGLLPPNANDRQVLEPSNSALSVLTSTSMTIQSSISSPGSGITEQGDNAH

Protein Length: 418

Fln nts: ATCCCTCAAATAGTAACAACAGTCCCCAGAACTTGCAAAGCAATACCCAGAAATTATTCACA_-_ATGTCATTGCTGCCTCCCGGGATAGGAGGCCAGGGCTTGAACTCTCAGGAAAACGACCCGTATCCGTACGACGATTCCCAGTTCCTAGCTAACAGGATAAGGCAGCATCAACTGAGCGGTAATTCTTCGATGAATCAGACGCCAAACCAGGCCTCGCAAGGGATTAATGAAACCAATACGTCTCCGGGCCGATCCATGGTTTTGCAGCTAAGCACAGGAAGTGCAAGCGCTTCACAGCTGCTGGCCTCCATGGGCAATTCGCCTCGCGGCACCGCGGTAATGACGCGGTCGCCCAGTACAGGAGGCAGCTGTAATGGCAGCGACGGAGGAATGCTTCCTCTTCCTCTCAGTCTCGGCCAGGCGGGTAAATCAGGCGACATCAACGAGTCCCGCTCGCGGGATGAAATTGAAGCTTCCTTCAAGTCGGCAAATAATGCCCGAGATTCGAACCTCGGAGGGCTATTTCCGCCGTTCGCTGGATCACCACGGGGAGTTCGACCGACAGGCCAAAACTTCCATACACAGTCCGGACAAGTGCCAATGCAAGTGTATGGTGGAATGCCCCAACCTCAGCATCAGAATCCATCTCCGACCGGAGTTGGTGCTGCACCACCTGTTCGACCTCGAGTAAGGGCACGCCGTGGACAGGCTACAGATCCCCACAGTATTGCAGAAAGATTGCGTCGGGAGAGGATTGCAGAGAGAATGAAGGCTCTGCAAGAACTGGTTCCTAATTCCAATAAGACGGATAAGGCTTCGATGCTGGATGAGATAATTGATTACGTCAAGTTTCTTCAGCTGCAAGTGAAGGTTCTAAGCATGAGTCGACTGGGAGGTGCAGGAGCAGTTGCTCCCCTTGTGGCTGATATACCTGCTGAGGGTGCCAACGCCCCACAAGGTACAAGAACCAACAGTAGCCAGAACTCTTCTCCAGACGGTCTAGCATTAACAGAACGCCAAGTAGCAAAGCTAATGGAGGAAGACATGGGATCAGCCATGCAGTATCTTCAAGGCAAAGGTCTCTGTCTGATGCCCATATCTCTGGCCTCAGCCATTAATAACTCCGGTGCGAGACCCCAGGCTCCATCCACCCCTTCTCTTCAAGGGCTATTGCCACCTAATGCCAACGACAGGCAGGTACTGGAACCCTCGAACTCGGCACTCTCTGTCCTCACATCCACCTCCATGACCATACAGTCATCCATCAGCTCGCCTGGGAGCGGAATAACGGAGCAAGGTGATAATGCACACA

Fln Alignment:

sp_v1.1_unigene183___QATDPHSXXXXXXXXXXXXXMKALQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLS
A9NSU4_____________RAAEVHNLSEKRRRNRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKKLQLQVQMLS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
434	66		33		0.997452
836	85		14		0.993533
855			14	85	0.993533
856	14			85	0.993533
858		14		85	0.993533
860		85		14	0.993533
861	85		14		0.993533
866		85		14	0.993533
867	85	14			0.993533
869		14	85		0.993533
871		14	85		0.993533
898	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain