SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene181

Length: 2572 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene181
CGTCGTGACCTTGGCTGTCACTCAACCCAAAACAAAGAAGAGCCATATACCTTGCGACTACCAAAACTTTGGCGTCGTGACCTTGGCTGTCACTCATTGATGCGGTAGGATTAGGTCACTATGGACGCTGTGAAAATTACTGCAAGAGGCAGGTAGAAAGATGGGCAAAGCAATATCTAGCTTCAACTGGTGAAGGAAAACCAGATCGAAGTCCAAGGATGTTGGAACTCATTGATTGGCTCAAGCAACACATACCAGCTGACGTCGTGACCTTGAGCTCAAAGACTGGTCTTGTTCATGGAGACTTTCGGATTGATAATCTTCTGTTCCATCCATCAGAGGAACGTGTCATTGGTGTTTTAGATTGGGAATTATCAACATTGGGGGACCCAATGTCTGATGTTGCTTACAACTGCATGTGTTTTCTCATCAACAACAATGAGTTTCCAGTTCCTCATTATGGCTTTGATAATGGGATAATGCCAGAAGGAGTTCCTTCTCTGGAAGAGCATCTGGCGAATTATTGTGCTGCAGCTGGTACCCAGTGGCCTGCTAAAGATTGGAAGTTTTATATTGCATTCTCTCTTTTTCGTTCAGCATCTATTTTTGCGGGGGTTTATTATAGGTGGTTGAAGGGAAATGCCTCAGGGGGGGAACGTGCCAAGTCTGCTGGACGCTTAGCTATATATTTTATTGATACAGCTTGGAAGTTTATAAGTAGGGATTCAGTACTTCCAGACGTCGTGACCTTGGCTTCACTCTTGGAAATGTACCATTGGAAACAGATGTCTCTTTATCCCATATTCCAGCATACTCTCAAGATATGACTATCAAAGGAAATGGGTTTGTTCCTAGTGCAAGAGTACAGGAATTAAGAAAGAAGCTGACTAATTTTATGGAGAAACATGTTTATCAATTGGAAAAGGAATTTATCAGGCATGCTCAATCAGACAAGCGGTGGACAATTCACCCGTCTGAAGAGACACACAAAGATATGGCAAAAGCACAAGGCCTTTGGAACCTCTGGGTACCAGTTGATAGTGCTGCCATGGTTAAGAAGTTTTCTGATGAAAGAAAATTCGATATTCATATCAAGGATAGGCATGAGAGCTTGTTGCTTGGGGCTGGTCTTTCCAATCTTGAATATTCATATCTTTGTGAAATCATGGGTCGCTCAGCTTGGGCTCCTCAAATTTTCAATTGCAGTGCACCAGACACAGGAAATATGGAGGTATTGTTTCGTTATGGCACTGTGGAACAACAAAGGACATGGCTCATTCCTCTATTGGAGGGGAAAATTAGATCTGGATTTGCAATGACAGAGCCTCAAGTTGCATCCTCCGATGCCACTAACATAGAATGCTCAATTTTACGTGAAGGAGATCATTATATCATTAATGGTCGGAAATGGTGGACAAGTGGAGCAATGGATCCAAGATGCAAGATTCTGATAGTTATGGGAAAAACAGATATGAATGCACCTAAGCATAAACAGCAATCAATGGTTCTGGTTCCTATTGATACTCCTGGTGTCCACATAGAAAGAGCCTTGACTGTTTTTGGTTTTGATGATGCTCCTCATGGCCATGCAGAGATTGTCTTTGAGAATGTGCAGGTTCCTATCAAAAATGTCATTCTGGGAGAAGGCCGTGGTTTTGAGATTGCACAAGGACGGTTGGGTCCAGGTCGATTACATCATTGTATGAGATTAGTTGGTGCTGCCGAACGTGGCATTGAAATGATGGTAAAAAGGGCACTCCAAAGAAAAGCCTTTGGCAAGTTGATCGCACAGCATGGATCATTCTTATCTGATCTTGCCAAGTGTCGTTTAGAAATAGAGAAAACAAGATTTTTGGTACTGGAAGCTGCAAATCAATTGGACTTGTTTGGCAATAAAGTTGCCAGAGGAGCAATTGCCATGGCTAAGGTTGCAGCTCCAAACATGGCTTTGAAAGTACTTGATACAGCAATCCAAGTTCATGGTGCCGCAGGTGTAAGCACAGACTTCGTACTTTCCCACCTCTGGGCTTCTGCTCGAACTTTGCGATTAGCAGATGGCCCTGATGAGGTCCATCTTGGGACTATAGCAAAACTTGAATTGTCTAGAGCAAGGCTCTGAGATCAAGTTAGTATGTTTTATCTAGAAAATCCATCAAAAGCATTCATCTCAACTAGATAACATTCTCAGAAAAAAGCAAAATTTGGGGAAGGATACTTACAGGAGGACATGAAGAATGTTAAATTCTATATTTTGGTATGTTCCAACTTGTAAGTTTATTTGAGAACTACCATAGGGTGAAGCAGGGTATAAAGTTTCCATGATCCAAAGGGAACTATAATTTGTAAATGAGAAAAAGCTATCTTTCGAAGTCACCAGCTGATTAACACCTTTGCTATTCAATTTAAATATTTAGTTGAATAAACTGATTCAAATGATTCTTTTTGGGAGACACTTAACAGTTTGTATAATTATGAATCTGATTGAAAATTACTTATTTATAGATGTAGTTTCATTCCTATATTGGATCAATCATGTTTTACATATTTTTCTCTGGAGCAGTGCGGGAATCAT

Ace file of the UniGene sp_v1.1_unigene181

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	acyl-CoA dehydrogenase (EC:1.3.99.3); K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	25%
Blast2go	acyl-coenzyme a dehydrogenase member 10	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acyl-CoA dehydrogenase.	EC:1.3.99.3	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid metabolism	00071	81%
Blast2go	Valine, leucine and isoleucine degradation	00280	81%
Blast2go	beta-Alanine metabolism	00410	81%
Blast2go	Propanoate metabolism	00640	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	ECs	Term	Type	e value	Identity
AutoFact	Acyl-CoA dehydrogenase.	EC:1.3.99.3	-	0.0	74%

Source	KEGGs	Term	Identity
AutoFact	Fatty acid metabolism	00071	74%
AutoFact	Valine, leucine and isoleucine degradation	00280	74%
AutoFact	beta-Alanine metabolism	00410	74%
AutoFact	Propanoate metabolism	00640	74%
AutoFact	Metabolic pathways	01100	74%
AutoFact	Biosynthesis of secondary metabolites	01110	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	acyl-CoA dehydrogenase activity	GO:0003995	Molecular Function	0.0	81%

Source	InterPros	Term	Type	Identity
Blast2go	Acyl-CoA oxidase/dehydrogenase, type 1	IPR006090	-	81%
Blast2go	Acyl-CoA oxidase/dehydrogenase, central domain	IPR006091	-	81%
Blast2go	Acyl-CoA dehydrogenase, N-terminal	IPR006092	-	81%
Blast2go	Acyl-CoA dehydrogenase/oxidase C-terminal	IPR009075	-	81%
Blast2go	Acyl-CoA dehydrogenase/oxidase	IPR009100	-	81%
Blast2go	Acyl-CoA dehydrogenase/oxidase, N-terminal	IPR013786	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPF0

Fln msg: your sequence is longer than subject: 432 - 227

Fln protein: MTIKGNGFVPSARVQELRKKLTNFMEKHVYQLEKEFIRHAQSDKRWTIHPSEETHKDMAKAQGLWNLWVPVDSAAMVKKFSDERKFDIHIKDRHESLLLGAGLSNLEYSYLCEIMGRSAWAPQIFNCSAPDTGNMEVLFRYGTVEQQRTWLIPLLEGKIRSGFAMTEPQVASSDATNIECSILREGDHYIINGRKWWTSGAMDPRCKILIVMGKTDMNAPKHKQQSMVLVPIDTPGVHIERALTVFGFDDAPHGHAEIVFENVQVPIKNVILGEGRGFEIAQGRLGPGRLHHCMRLVGAAERGIEMMVKRALQRKAFGKLIAQHGSFLSDLAKCRLEIEKTRFLVLEAANQLDLFGNKVARGAIAMAKVAAPNMALKVLDTAIQVHGAAGVSTDFVLSHLWASARTLRLADGPDEVHLGTIAKLELSRARL*

Protein Length: 433

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCCAAAACAAAGAAGAGCCATATACCTTGCGACTACCAAAACTTTGGCGTCGTGACCTTGGCTGTCACTCATTGATGCGGTAGGATTAGGTCACTATGGACGCTGTGAAAATTACTGCAAGAGGCAGGTAGAAAGATGGGCAAAGCAATATCTAGCTTCAACTGGTGAAGGAAAACCAGATCGAAGTCCAAGGATGTTGGAACTCATTGATTGGCTCAAGCAACACATACCAGCTGACGTCGTGACCTTGAGCTCAAAGACTGGTCTTGTTCATGGAGACTTTCGGATTGATAATCTTCTGTTCCATCCATCAGAGGAACGTGTCATTGGTGTTTTAGATTGGGAATTATCAACATTGGGGGACCCAATGTCTGATGTTGCTTACAACTGCATGTGTTTTCTCATCAACAACAATGAGTTTCCAGTTCCTCATTATGGCTTTGATAATGGGATAATGCCAGAAGGAGTTCCTTCTCTGGAAGAGCATCTGGCGAATTATTGTGCTGCAGCTGGTACCCAGTGGCCTGCTAAAGATTGGAAGTTTTATATTGCATTCTCTCTTTTTCGTTCAGCATCTATTTTTGCGGGGGTTTATTATAGGTGGTTGAAGGGAAATGCCTCAGGGGGGGAACGTGCCAAGTCTGCTGGACGCTTAGCTATATATTTTATTGATACAGCTTGGAAGTTTATAAGTAGGGATTCAGTACTTCCAGACGTCGTGACCTTGGCTTCACTCTTGGAAATGTACCATTGGAAACAGATGTCTCTTTATCCCATATTCCAGCATACTCTCAAGAT_-_ATGACTATCAAAGGAAATGGGTTTGTTCCTAGTGCAAGAGTACAGGAATTAAGAAAGAAGCTGACTAATTTTATGGAGAAACATGTTTATCAATTGGAAAAGGAATTTATCAGGCATGCTCAATCAGACAAGCGGTGGACAATTCACCCGTCTGAAGAGACACACAAAGATATGGCAAAAGCACAAGGCCTTTGGAACCTCTGGGTACCAGTTGATAGTGCTGCCATGGTTAAGAAGTTTTCTGATGAAAGAAAATTCGATATTCATATCAAGGATAGGCATGAGAGCTTGTTGCTTGGGGCTGGTCTTTCCAATCTTGAATATTCATATCTTTGTGAAATCATGGGTCGCTCAGCTTGGGCTCCTCAAATTTTCAATTGCAGTGCACCAGACACAGGAAATATGGAGGTATTGTTTCGTTATGGCACTGTGGAACAACAAAGGACATGGCTCATTCCTCTATTGGAGGGGAAAATTAGATCTGGATTTGCAATGACAGAGCCTCAAGTTGCATCCTCCGATGCCACTAACATAGAATGCTCAATTTTACGTGAAGGAGATCATTATATCATTAATGGTCGGAAATGGTGGACAAGTGGAGCAATGGATCCAAGATGCAAGATTCTGATAGTTATGGGAAAAACAGATATGAATGCACCTAAGCATAAACAGCAATCAATGGTTCTGGTTCCTATTGATACTCCTGGTGTCCACATAGAAAGAGCCTTGACTGTTTTTGGTTTTGATGATGCTCCTCATGGCCATGCAGAGATTGTCTTTGAGAATGTGCAGGTTCCTATCAAAAATGTCATTCTGGGAGAAGGCCGTGGTTTTGAGATTGCACAAGGACGGTTGGGTCCAGGTCGATTACATCATTGTATGAGATTAGTTGGTGCTGCCGAACGTGGCATTGAAATGATGGTAAAAAGGGCACTCCAAAGAAAAGCCTTTGGCAAGTTGATCGCACAGCATGGATCATTCTTATCTGATCTTGCCAAGTGTCGTTTAGAAATAGAGAAAACAAGATTTTTGGTACTGGAAGCTGCAAATCAATTGGACTTGTTTGGCAATAAAGTTGCCAGAGGAGCAATTGCCATGGCTAAGGTTGCAGCTCCAAACATGGCTTTGAAAGTACTTGATACAGCAATCCAAGTTCATGGTGCCGCAGGTGTAAGCACAGACTTCGTACTTTCCCACCTCTGGGCTTCTGCTCGAACTTTGCGATTAGCAGATGGCCCTGATGAGGTCCATCTTGGGACTATAGCAAAACTTGAATTGTCTAGAGCAAGGCTCTGA___GATCAAGTTAGTATGTTTTATCTAGAAAATCCATCAAAAGCATTCATCTCAACTAGATAACATTCTCAGAAAAAAGCAAAATTTGGGGAAGGATACTTACAGGAGGACATGAAGAATGTTAAATTCTATATTTTGGTATGTTCCAACTTGTAAGTTTATTTGAGAACTACCATAGGGTGAAGCAGGGTATAAAGTTTCCATGATCCAAAGGGAACTATAATTTGTAAATGAGAAAAAGCTATCTTTCGAAGTCACCAGCTGATTAACACCTTTGCTATTCAATTTAAATATTTAGTTGAATAAACTGATTCAAATGATTCTTTTTGGGAGACACTTAACAGTTTGTATAATTATGAATCTGATTGAAAATTACTTATTTATAGATGTAGTTTCATTCCTATATTGGATCAATCATGTTTTACATATTTTTCTCTGGAGCAGTGCGGGAATCAT

Fln Alignment:

sp_v1.1_unigene181___WWTSGAMDPRCKILIVMGKTDMNAPKHKQQSMVLVPIDTPGVHIERALTVFGFDDAPHGHAEIVFENVQVPIKNVILGEGRGFEIAQGRLGPGRLHHCMRLVGAAERGIEMMVKRALQRKAFGKLIAQHGSFLSDLAKCRLEIEKTRFLVLEAANQLD--LFGNKVARGAIAMAKVAAPNMALKVLDTAIQVHGAAGVSTDFVLSHLWASARTLRLADGPDEV
B8LPF0_____________WCTNG---PVAETLIIYAKTDPNAGS-KGITTFIIEKGMEGFSTAQKLDKLGMRGSDT--CELVFENCFVPEENILGKEGKGVYVLMSGLDLERLVLSAGPIGLMQASMDVVLPYVRQREQFGRPIGEFQLIQGKLADMYTALQSSRAFVYSVAKKCDNGEVDKKDCAGVILFAAENATQVALQ----AIQCLGGNGYVNEYPTGRLLRDAKLFEIGAGTSEI

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
760			66	33	0.997452
766	33			66	1.0
770		33		66	1.0
1007	20		80		0.995493
1035		20		80	0.995493
1233	88			11	0.923564
1234	88		11		0.923564
1235			11	88	0.923564
1300	85		14		0.993533
1451		90	10		0.90298
1452	90		10		0.90298
1453	90			10	0.90298
1717	15		84		0.999986
1751	10		90		0.90298
1820		16		83	0.994512
2118			88	11	0.923564
2119		88	11		0.923564
2120	88		11		0.923564
2121	88		11		0.923564
2361	33		66		1.0
2399		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain