SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene179

Length: 2332 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene179
CGTCGTGACCTTGGCTGTCACTCAAGTCGAAGAAGGTCTTTCATAGGAACGTCGTGACCTTGGCTGTCACTCATTTATAATATAATCAATCGTTCTATTCTACTTGAAATGGTGGTGGCGATTGTGGTGGTATAATTAGTTTCAGAATAACATGGACGAGAATGACAGGCAATCTGAGATTTCCGAGATTGAACCTCTTTCCCCATCTGAACAACAATGCGAAGACACAAAACTAGATGCCCACCAAAACCCTGGGAGTAAATCAGAGGAAACCCTGAGAAATAGGAGGCGGCATATTCCCTCCTCCAATGGAACAAATGCATCTGAAAATGGAGATGAGAACCCCTCCATGGAAGTAAAGAATGAGGGCACCTCCCCTAATGTTTTCATGTTCTGGGCATGCTTTGTGGGCATAGTCTCGTTGATTACTCTATTCTTTGTGTTAACTTCTTCTTTTGCCGGTCCAGAGAACGAGAAAGCAGAATTCTTAAGCATGCCACCTGATTTACGCTCACATTATTTTAAGGGCAAAATGGTCAAAGTCCAGATTGGGGCAGAAGAGAAGCAATCAATCCAAGTATTTGTGAGACAAGAAGGTCCCAGAGACGCTGAAACGGTGCTTTTAGTTCATGGTTTTGGGGCAAGCTCATTCTCATTTCGTGACGTCATATCAATCCTGGCTTCCAAGGGAATTCATGCTGTTGCACTGGATCTACCGGGCTTTGGTTTCTCGGACAAGTCCAGCTTACAGACTGATAGAAGATGGGGTGGTTTGATTGGGAGGGTTAAGGATGTGTTTCTTGACATAAAGGAGAAAGGGCTGTTCTGGGGATTCGATCAGCTGGTGGAGACCGGGGAGATGCCTTATGTGCAGTATGAACCTAGAGTGACTAAAAGCTACCAGGCTTTGCAATGCGCGCCACAAGAATTGAGCCAAAGCTTGAAACAGGTAATTGACTCCTTATCTCTTGGGCCTGTTCATTTAGTAGTCCATGACACAGGATTTGAGACTGGTGCCATTTGGGCTGCAAGCAATCCTTCTTTCGTTCGAAGTATTACTCTCATTGATGCTGCCCCACACAATCCATCTGTACCCTCGTGGGTTCTGAAGGTGCCAGGAGTGGGGGAGTTAGTGACCCATTTTCCCTTACTTCAATTGGGTCTCCTGAGAATGTGTTGTTCAAAGTTCATGGATAGATCTGCTGCAGAGGCCCATGGGATTCTCTTGAGGACTAAGAATGGCAGGAGGGCTTCTGTGGAGATCGGAAACCGGGCAAATGCAAGCTTTGACTTGAAGTCTTGGGCAGACGCTGATAGTGTGAAAGAAGTGCCTATGCAAATACTGTGGGGCAATGATTGGTCCAAGGACTGGCAGAGGGAGGGAGACCAGATCGCCAAGGTGCTTCCTCGTGCAGTTTTTGTCTCCCACAGTGGTGGAAGATGGCCTCAGGAAGATGTAGCCAAAGAAATTGCAGAAGCACTTGCAAGCTTTATATCTTCCTTTCCCCCTACTGCCAGGACTGTTACGGAAGAGGCTTTGCCAGAGCATATACAGAAAATGTTTGATGAGGTTGGTGGTGACCATCATCACAGTCATTCCGATTTACATAACCATATTCACACCCATCAACATGGTCATGATCATGGAGACCATGGGCACAGTCATGGTGCTGCATATATGGATGGATATGGTCTTGGACATGGTGGCTGGCACTAAATACTCTTGGCTAAGATATTTTTTGAGGCTGATGTGTTGCATACCATAGCCTCACGTAGTTGTTTTAAGTGTGCTCACATAGTGCTAAAGTGGACATATCCGGTGCATTGACCACCACGATTCTCCCATCTTATGCAAAATTAGCCTCCATAAGGTGTTTATAGTAAGTTACACTGTTATGCTGTCAATGTACAGAAGGAGATGGTGCTATATACATGTTAGTTATTTTAATGAGACTTATACATCGTAACGGGTTGAGTTAGCAATTTCAAATCTGCACATTTAACGATACTCAACAATTTGAAATCTTATGAAGTCATTTAACCCAGTCCTCAATAGAATTTTTGTGTAATCTAGTGAGGTTGCAACACCCGATTGTAAAAACCATCTGAATGGTGCGTGGCGGTTAATTCTGAGGCAAATACTAGTGTGCCTTTTTAGACATAGTTTCTTTGTGTTTGTCTAGTTATAGTGGATTGTGTATTTGATACGGTTAATTTCTTTGTGTTTGTCTAGTTATAGTGGATTGTGTATTTGATACGGTTCAGACATTTGGAAGTAATCATTAATGTTATTGAACAAGATTCCATACAAAAGTTTTAGATAGGATTCCAG

Ace file of the UniGene sp_v1.1_unigene179

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein AUXIN RESPONSE 4 n=2 Tax=Arabidopsis RepID=AXR4_ARATH	-	-	42%
FL-Next	sp=Protein AUXIN RESPONSE 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	42%
Blast2go	axr4 (auxin resistant 4)	-	-	58%

Source	GOs	Term	Type	Identity
Blast2go	response to mechanical stimulus	GO:0009612	Biological Process	58%
Blast2go	auxin polar transport	GO:0009926	Biological Process	58%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	58%
Blast2go	plasma membrane	GO:0005886	Cellular Component	58%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Epoxide hydrolase-like	IPR000639	-	0.0	58%
Blast2go	Alpha/beta hydrolase, N-terminal	IPR022742	-	0.0	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FZ33

Fln msg: your sequence is longer than subject: 522 - 473

Fln protein: MDENDRQSEISEIEPLSPSEQQCEDTKLDAHQNPGSKSEETLRNRRRHIPSSNGTNASENGDENPSMEVKNEGTSPNVFMFWACFVGIVSLITLFFVLTSSFAGPENEKAEFLSMPPDLRSHYFKGKMVKVQIGAEEKQSIQVFVRQEGPRDAETVLLVHGFGASSFSFRDVISILASKGIHAVALDLPGFGFSDKSSLQTDRRWGGLIGRVKDVFLDIKEKGLFWGFDQLVETGEMPYVQYEPRVTKSYQALQCAPQELSQSLKQVIDSLSLGPVHLVVHDTGFETGAIWAASNPSFVRSITLIDAAPHNPSVPSWVLKVPGVGELVTHFPLLQLGLLRMCCSKFMDRSAAEAHGILLRTKNGRRASVEIGNRANASFDLKSWADADSVKEVPMQILWGNDWSKDWQREGDQIAKVLPRAVFVSHSGGRWPQEDVAKEIAEALASFISSFPPTARTVTEEALPEHIQKMFDEVGGDHHHSHSDLHNHIHTHQHGHDHGDHGHSHGAAYMDGYGLGHGGWH*

Protein Length: 523

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTCGAAGAAGGTCTTTCATAGGAACGTCGTGACCTTGGCTGTCACTCATTTATAATATAATCAATCGTTCTATTCTACTTGAAATGGTGGTGGCGATTGTGGTGGTATAATTAGTTTCAGAATAAC_-_ATGGACGAGAATGACAGGCAATCTGAGATTTCCGAGATTGAACCTCTTTCCCCATCTGAACAACAATGCGAAGACACAAAACTAGATGCCCACCAAAACCCTGGGAGTAAATCAGAGGAAACCCTGAGAAATAGGAGGCGGCATATTCCCTCCTCCAATGGAACAAATGCATCTGAAAATGGAGATGAGAACCCCTCCATGGAAGTAAAGAATGAGGGCACCTCCCCTAATGTTTTCATGTTCTGGGCATGCTTTGTGGGCATAGTCTCGTTGATTACTCTATTCTTTGTGTTAACTTCTTCTTTTGCCGGTCCAGAGAACGAGAAAGCAGAATTCTTAAGCATGCCACCTGATTTACGCTCACATTATTTTAAGGGCAAAATGGTCAAAGTCCAGATTGGGGCAGAAGAGAAGCAATCAATCCAAGTATTTGTGAGACAAGAAGGTCCCAGAGACGCTGAAACGGTGCTTTTAGTTCATGGTTTTGGGGCAAGCTCATTCTCATTTCGTGACGTCATATCAATCCTGGCTTCCAAGGGAATTCATGCTGTTGCACTGGATCTACCGGGCTTTGGTTTCTCGGACAAGTCCAGCTTACAGACTGATAGAAGATGGGGTGGTTTGATTGGGAGGGTTAAGGATGTGTTTCTTGACATAAAGGAGAAAGGGCTGTTCTGGGGATTCGATCAGCTGGTGGAGACCGGGGAGATGCCTTATGTGCAGTATGAACCTAGAGTGACTAAAAGCTACCAGGCTTTGCAATGCGCGCCACAAGAATTGAGCCAAAGCTTGAAACAGGTAATTGACTCCTTATCTCTTGGGCCTGTTCATTTAGTAGTCCATGACACAGGATTTGAGACTGGTGCCATTTGGGCTGCAAGCAATCCTTCTTTCGTTCGAAGTATTACTCTCATTGATGCTGCCCCACACAATCCATCTGTACCCTCGTGGGTTCTGAAGGTGCCAGGAGTGGGGGAGTTAGTGACCCATTTTCCCTTACTTCAATTGGGTCTCCTGAGAATGTGTTGTTCAAAGTTCATGGATAGATCTGCTGCAGAGGCCCATGGGATTCTCTTGAGGACTAAGAATGGCAGGAGGGCTTCTGTGGAGATCGGAAACCGGGCAAATGCAAGCTTTGACTTGAAGTCTTGGGCAGACGCTGATAGTGTGAAAGAAGTGCCTATGCAAATACTGTGGGGCAATGATTGGTCCAAGGACTGGCAGAGGGAGGGAGACCAGATCGCCAAGGTGCTTCCTCGTGCAGTTTTTGTCTCCCACAGTGGTGGAAGATGGCCTCAGGAAGATGTAGCCAAAGAAATTGCAGAAGCACTTGCAAGCTTTATATCTTCCTTTCCCCCTACTGCCAGGACTGTTACGGAAGAGGCTTTGCCAGAGCATATACAGAAAATGTTTGATGAGGTTGGTGGTGACCATCATCACAGTCATTCCGATTTACATAACCATATTCACACCCATCAACATGGTCATGATCATGGAGACCATGGGCACAGTCATGGTGCTGCATATATGGATGGATATGGTCTTGGACATGGTGGCTGGCACTAA___ATACTCTTGGCTAAGATATTTTTTGAGGCTGATGTGTTGCATACCATAGCCTCACGTAGTTGTTTTAAGTGTGCTCACATAGTGCTAAAGTGGACATATCCGGTGCATTGACCACCACGATTCTCCCATCTTATGCAAAATTAGCCTCCATAAGGTGTTTATAGTAAGTTACACTGTTATGCTGTCAATGTACAGAAGGAGATGGTGCTATATACATGTTAGTTATTTTAATGAGACTTATACATCGTAACGGGTTGAGTTAGCAATTTCAAATCTGCACATTTAACGATACTCAACAATTTGAAATCTTATGAAGTCATTTAACCCAGTCCTCAATAGAATTTTTGTGTAATCTAGTGAGGTTGCAACACCCGATTGTAAAAACCATCTGAATGGTGCGTGGCGGTTAATTCTGAGGCAAATACTAGTGTGCCTTTTTAGACATAGTTTCTTTGTGTTTGTCTAGTTATAGTGGATTGTGTATTTGATACGGTTAATTTCTTTGTGTTTGTCTAGTTATAGTGGATTGTGTATTTGATACGGTTCAGACATTTGGAAGTAATCATTAATGTTATTGAACAAGATTCCATACAAAAGTTTTAGATAGGATTCCAG

Fln Alignment:

sp_v1.1_unigene179___NRRRHIPSSNGTNASENGDENPSMEVKNEGTSPNVFMFWACFVGIVSLITLFFVLTSSFAGPENEKAEFLSMPPDLRSHYFKGKMVKVQIGAEEKQSIQVFVRQEGPRDAETVLLVHGFGASSFSFRDVISILASKGIHAVALDLPGFGFSDKSSLQTDR-RWGGLIGRVKDVFLDIKEKGLFWGFDQLVETGEMPY---VQYEPRVTKSYQALQCAPQELSQSLKQVIDSLSLGPVHLVVHDTGFETGAIWAASNPSFVRSITLIDAAPHNPSVPSWVLKVPGVGELVTHFPLLQLGLLRMCCSKFMDRSAAEAHGILLRTKNGRRASVEIGNRANASFDLKSWADADSVKEVPMQILWGNDWSKDWQREGDQIAKVLPRAVFVSHSGGRWPQEDVAKEIAEALASFISSFPPTARTVTEEALPEHIQKMFDE
Q9FZ33_____________NPPKNKPKDSDFTKSESTMKNPKPQ------SQNPFPFWFYFTVVVSLATIIFISLSLFSSQNDPRSWFLSLPPALRQHYSNGRTIKVQVNSNESP-IEVFVAESGSIHTETVVIVHGLGLSSFAFKEMIQSLGSKGIHSVAIDLPGNGFSDKSMVVIGGDREIGFVARVKEVYGLIQEKGVFWAFDQMIETGDLPYEEIIKLQNSKRRSFKAIELGSEETARVLGQVIDTLGLAPVHLVLHDSALGLASNWVSENWQSVRSVTLIDSSI-SPALPLWVLNVPGIREILLAFSFGFEKLVSFRCSKEMTLSDIDAHRILLKGRNGREAVVASLNKLNHSFDIAQWGNSDGINGIPMQVIWSSEASKEWSDEGQRVAKALPKAKFVTHSGSRWPQESKSGELADYISEFVSLLPKSIRRVAEEPIPEEVQKVLEE

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
104	66		33		0.997452
105		33	33	33	0.997753
106			33	66	1.0
107			33	66	1.0
196		25		75	0.996473
225	25			75	0.996473
263	40		60		1.0
267	80		20		0.995493
343	83		16		0.994512
345		83	16		0.994512
347	16	83			0.994512
349			16	83	0.994512
420	10	90			0.90298
422		90	10		0.90298
424			10	90	0.90298
1339		88		11	0.999952
1501		10		90	0.90298
1502		88	11		0.923564
1504	11			88	0.923564
1505			12	87	0.992554
1507		87	12		0.992554
1508	12	87			0.992554
1509		87	12		0.992554
1510		87		12	0.992554
1511		87	12		0.992554
1517		83	16		0.999991
1872	53		46		1.0
1951		10		90	0.90298
2046		14		85	0.993533
2119	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain